RNA–Protein interactions for RNA: ENST00000398258.7

CD47-203, Transcript of CD47 molecule, humanhuman

TSL 3

Gene CD47, Length 469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD47-203ENST00000398258 SUZ12Q15022 739 aaKnown RBP8.54□□□□□ -1.04
CD47-203ENST00000398258 NBPF3Q9H094 633 aa8.54□□□□□ -1.04
CD47-203ENST00000398258 PCDHGA10Q9Y5H3 936 aa8.52□□□□□ -1.05
CD47-203ENST00000398258 PPP1R3GB7ZBB8 358 aa8.51□□□□□ -1.05
CD47-203ENST00000398258 KCNC4Q03721 635 aa8.51□□□□□ -1.05
CD47-203ENST00000398258 WBP1LQ9NX94 342 aa8.51□□□□□ -1.05
CD47-203ENST00000398258 RABGEF1Q9UJ41 708 aa8.51□□□□□ -1.05
CD47-203ENST00000398258 SOWAHBA6NEL2 793 aa8.5□□□□□ -1.05
CD47-203ENST00000398258 ANKK1Q8NFD2 765 aa8.5□□□□□ -1.05
CD47-203ENST00000398258 PRKD2Q9BZL6 878 aa8.5□□□□□ -1.05
CD47-203ENST00000398258 EMILIN3Q9NT22 766 aa8.49□□□□□ -1.05
CD47-203ENST00000398258 CHGAP10645 457 aaKnown RBP8.46□□□□□ -1.06
CD47-203ENST00000398258 ZFRQ96KR1 1074 aaKnown RBP8.46□□□□□ -1.06
CD47-203ENST00000398258 KIAA1468Q9P260 1216 aa8.46□□□□□ -1.06
CD47-203ENST00000398258 SEPT9Q9UHD8 586 aaPredicted RBP8.46□□□□□ -1.06
CD47-203ENST00000398258 DNAJC5Q9H3Z4 198 aa8.44□□□□□ -1.06
CD47-203ENST00000398258 PDZRN3Q9UPQ7 1066 aa8.44□□□□□ -1.06
CD47-203ENST00000398258 LAPTM4BQ86VI4 370 aa8.43□□□□□ -1.06
CD47-203ENST00000398258 PDE4AP27815 886 aa8.42□□□□□ -1.06
CD47-203ENST00000398258 LARP6Q9BRS8 491 aaKnown RBP8.42□□□□□ -1.06
CD47-203ENST00000398258 MAP3K9P80192 1104 aa8.4□□□□□ -1.06
CD47-203ENST00000398258 MFSD10Q14728 455 aa8.4□□□□□ -1.06
CD47-203ENST00000398258 V9GY48 417 aaPredicted RBP8.4□□□□□ -1.06
CD47-203ENST00000398258 DDX27Q96GQ7 796 aaKnown RBP8.39□□□□□ -1.07
CD47-203ENST00000398258 TYW1BQ6NUM6 668 aa8.38□□□□□ -1.07
CD47-203ENST00000398258 NYAP1Q6ZVC0 841 aa8.38□□□□□ -1.07
CD47-203ENST00000398258 WIPF1O43516 503 aa8.37□□□□□ -1.07
CD47-203ENST00000398258 HPS5Q9UPZ3 1129 aa8.37□□□□□ -1.07
CD47-203ENST00000398258 GTPBP6O43824 516 aaPredicted RBP8.36□□□□□ -1.07
CD47-203ENST00000398258 PHF14O94880 888 aa8.36□□□□□ -1.07
CD47-203ENST00000398258 MYT1Q01538 1121 aa8.36□□□□□ -1.07
CD47-203ENST00000398258 C6orf132Q5T0Z8 1188 aa8.36□□□□□ -1.07
CD47-203ENST00000398258 TRIM6-TRIM34B2RNG4 842 aa8.35□□□□□ -1.07
CD47-203ENST00000398258 TSR3Q9UJK0 312 aaKnown RBP8.35□□□□□ -1.07
CD47-203ENST00000398258 INSM1Q01101 510 aaPredicted RBP8.34□□□□□ -1.07
CD47-203ENST00000398258 FAM98CQ17RN3 349 aaKnown RBP8.34□□□□□ -1.07
CD47-203ENST00000398258 TJAP1Q5JTD0 557 aa8.34□□□□□ -1.07
CD47-203ENST00000398258 CADPS2Q86UW7 1296 aa8.34□□□□□ -1.07
CD47-203ENST00000398258 FBXW7Q969H0 707 aa8.34□□□□□ -1.07
CD47-203ENST00000398258 ONECUT3O60422 494 aaPredicted RBP8.33□□□□□ -1.08
CD47-203ENST00000398258 WFS1O76024 890 aa8.33□□□□□ -1.08
CD47-203ENST00000398258 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.33□□□□□ -1.08
CD47-203ENST00000398258 C3orf80F5H4A9 247 aa8.32□□□□□ -1.08
CD47-203ENST00000398258 TSKSQ9UJT2 592 aa8.32□□□□□ -1.08
CD47-203ENST00000398258 RBM33Q96EV2 1170 aaKnown RBP8.31□□□□□ -1.08
CD47-203ENST00000398258 LRCH3Q96II8 777 aa8.31□□□□□ -1.08
CD47-203ENST00000398258 PPP1R18Q6NYC8 613 aa8.29□□□□□ -1.08
CD47-203ENST00000398258 ZNF516Q92618 1163 aa8.28□□□□□ -1.08
CD47-203ENST00000398258 FAM198AQ9UFP1 575 aa8.28□□□□□ -1.08
CD47-203ENST00000398258 SMAPO00193 183 aa8.27□□□□□ -1.09
CD47-203ENST00000398258 NFX1Q12986 1120 aaKnown RBP8.27□□□□□ -1.09
CD47-203ENST00000398258 TSR1Q2NL82 804 aaKnown RBP8.27□□□□□ -1.09
CD47-203ENST00000398258 MTRQ99707 1265 aa8.27□□□□□ -1.09
CD47-203ENST00000398258 RYDENQ9NUL5 291 aaKnown RBP8.27□□□□□ -1.09
CD47-203ENST00000398258 DPYSL4O14531 572 aa8.26□□□□□ -1.09
CD47-203ENST00000398258 TRIM67Q6ZTA4 783 aa8.26□□□□□ -1.09
CD47-203ENST00000398258 EPAS1Q99814 870 aa8.26□□□□□ -1.09
CD47-203ENST00000398258 LCE2CQ5TA81 110 aa8.25□□□□□ -1.09
CD47-203ENST00000398258 DDX12PQ92771 950 aa8.25□□□□□ -1.09
CD47-203ENST00000398258 CAMK2BQ13554 666 aa8.24□□□□□ -1.09
CD47-203ENST00000398258 SAMD7Q7Z3H4 446 aa8.24□□□□□ -1.09
CD47-203ENST00000398258 NKX2-3Q8TAU0 364 aa8.24□□□□□ -1.09
CD47-203ENST00000398258 PRIM1P49642 420 aaKnown RBP8.23□□□□□ -1.09
CD47-203ENST00000398258 PPP4CP60510 307 aa8.23□□□□□ -1.09
CD47-203ENST00000398258 DGAT1O75907 488 aa8.21□□□□□ -1.1
CD47-203ENST00000398258 PKDCCQ504Y2 493 aa8.21□□□□□ -1.1
CD47-203ENST00000398258 APLP1P51693 650 aa8.2□□□□□ -1.1
CD47-203ENST00000398258 EN1Q05925 392 aaPredicted RBP8.2□□□□□ -1.1
CD47-203ENST00000398258 KRTAP4-8Q9BYQ9 185 aa8.2□□□□□ -1.1
CD47-203ENST00000398258 IL21Q9HBE4 155 aa8.2□□□□□ -1.1
CD47-203ENST00000398258 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.2□□□□□ -1.1
CD47-203ENST00000398258 EMID1Q96A84 441 aaPredicted RBP8.19□□□□□ -1.1
CD47-203ENST00000398258 NBR1Q14596 966 aa8.17□□□□□ -1.1
CD47-203ENST00000398258 PACS2Q86VP3 889 aa8.17□□□□□ -1.1
CD47-203ENST00000398258 CDCA7LQ96GN5 454 aa8.17□□□□□ -1.1
CD47-203ENST00000398258 MAP3K7O43318 606 aa8.15□□□□□ -1.1
CD47-203ENST00000398258 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.14□□□□□ -1.11
CD47-203ENST00000398258 ST8SIA5O15466 376 aa8.13□□□□□ -1.11
CD47-203ENST00000398258 PRSS12P56730 875 aa8.13□□□□□ -1.11
CD47-203ENST00000398258 TATDN2Q93075 761 aa8.13□□□□□ -1.11
CD47-203ENST00000398258 AAASQ9NRG9 546 aa8.12□□□□□ -1.11
CD47-203ENST00000398258 COPS2P61201 443 aa8.11□□□□□ -1.11
CD47-203ENST00000398258 CDHR5Q9HBB8 845 aa8.11□□□□□ -1.11
CD47-203ENST00000398258 PNMA3Q9UL41 463 aa8.11□□□□□ -1.11
CD47-203ENST00000398258 PDIA6Q15084 440 aa8.1□□□□□ -1.11
CD47-203ENST00000398258 RNF40O75150 1001 aa8.09□□□□□ -1.11
CD47-203ENST00000398258 KRTAP9-2Q9BYQ4 174 aa8.09□□□□□ -1.11
CD47-203ENST00000398258 LORP23490 312 aaPredicted RBP8.08□□□□□ -1.12
CD47-203ENST00000398258 NUDT18Q6ZVK8 323 aa8.08□□□□□ -1.12
CD47-203ENST00000398258 XP32Q5T750 250 aa8.07□□□□□ -1.12
CD47-203ENST00000398258 KRTAP9-6A0A140TA67 174 aa8.06□□□□□ -1.12
CD47-203ENST00000398258 FAM181BA6NEQ2 426 aa8.05□□□□□ -1.12
CD47-203ENST00000398258 NBPF26B4DH59 902 aa8.05□□□□□ -1.12
CD47-203ENST00000398258 RNF223E7ERA6 249 aa8.05□□□□□ -1.12
CD47-203ENST00000398258 SWT1Q5T5J6 900 aaKnown RBP8.05□□□□□ -1.12
CD47-203ENST00000398258 DACH1Q9UI36 760 aa8.05□□□□□ -1.12
CD47-203ENST00000398258 ZPR1O75312 459 aa8.04□□□□□ -1.12
CD47-203ENST00000398258 PRR20EP86478 221 aa8.04□□□□□ -1.12
CD47-203ENST00000398258 PRR20CP86479 221 aa8.04□□□□□ -1.12
CD47-203ENST00000398258 PRR20DP86480 221 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms