RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 DDRGK1Q96HY6 314 aa10.91□□□□□ -0.66
HMGB1-203ENST00000341423 COG3Q96JB2 828 aa10.91□□□□□ -0.66
HMGB1-203ENST00000341423 NLRP6P59044 892 aa10.9□□□□□ -0.66
HMGB1-203ENST00000341423 DDX54Q8TDD1 881 aaKnown RBP10.89□□□□□ -0.67
HMGB1-203ENST00000341423 ABTB2Q8N961 1025 aa10.89□□□□□ -0.67
HMGB1-203ENST00000341423 AK7Q96M32 723 aa10.89□□□□□ -0.67
HMGB1-203ENST00000341423 TMEM87AQ8NBN3 555 aa10.89□□□□□ -0.67
HMGB1-203ENST00000341423 NUP155O75694 1391 aa10.89□□□□□ -0.67
HMGB1-203ENST00000341423 TMF1P82094 1093 aa10.88□□□□□ -0.67
HMGB1-203ENST00000341423 MORC1Q86VD1 984 aa10.88□□□□□ -0.67
HMGB1-203ENST00000341423 LMOD1P29536 600 aaPredicted RBP10.88□□□□□ -0.67
HMGB1-203ENST00000341423 TCEAL9Q9UHQ7 104 aa10.88□□□□□ -0.67
HMGB1-203ENST00000341423 CCDC18Q5T9S5 1454 aa10.88□□□□□ -0.67
HMGB1-203ENST00000341423 UHRF1BP1Q6BDS2 1440 aa10.88□□□□□ -0.67
HMGB1-203ENST00000341423 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.88□□□□□ -0.67
HMGB1-203ENST00000341423 BIN2Q9UBW5 565 aaPredicted RBP10.88□□□□□ -0.67
HMGB1-203ENST00000341423 NF2P35240 595 aa10.87□□□□□ -0.67
HMGB1-203ENST00000341423 UACAQ9BZF9 1416 aa10.87□□□□□ -0.67
HMGB1-203ENST00000341423 AFAP1Q8N556 730 aa10.87□□□□□ -0.67
HMGB1-203ENST00000341423 SYNJ2O15056 1496 aa10.87□□□□□ -0.67
HMGB1-203ENST00000341423 EXOC5O00471 708 aa10.87□□□□□ -0.67
HMGB1-203ENST00000341423 C11orf95C9JLR9 678 aaPredicted RBP10.86□□□□□ -0.67
HMGB1-203ENST00000341423 TATP17735 454 aaPredicted RBP10.86□□□□□ -0.67
HMGB1-203ENST00000341423 RFX1P22670 979 aa10.86□□□□□ -0.67
HMGB1-203ENST00000341423 MINK1Q8N4C8 1332 aaPredicted RBP10.85□□□□□ -0.67
HMGB1-203ENST00000341423 ZPR1O75312 459 aa10.85□□□□□ -0.67
HMGB1-203ENST00000341423 ARHGEF6Q15052 776 aa10.85□□□□□ -0.67
HMGB1-203ENST00000341423 NESP48681 1621 aa10.85□□□□□ -0.67
HMGB1-203ENST00000341423 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.85□□□□□ -0.67
HMGB1-203ENST00000341423 RAD21O60216 631 aa10.85□□□□□ -0.67
HMGB1-203ENST00000341423 SLC52A1Q9NWF4 448 aa10.85□□□□□ -0.67
HMGB1-203ENST00000341423 MROH2BQ7Z745 1585 aa10.85□□□□□ -0.67
HMGB1-203ENST00000341423 TRAK1Q9UPV9 953 aa10.85□□□□□ -0.67
HMGB1-203ENST00000341423 EIF3AQ14152 1382 aaKnown RBP10.84□□□□□ -0.67
HMGB1-203ENST00000341423 TMOD2Q9NZR1 351 aa10.84□□□□□ -0.67
HMGB1-203ENST00000341423 PLB1Q6P1J6 1458 aa10.84□□□□□ -0.67
HMGB1-203ENST00000341423 TAOK2Q9UL54 1235 aa10.84□□□□□ -0.67
HMGB1-203ENST00000341423 FGD1P98174 961 aa10.84□□□□□ -0.67
HMGB1-203ENST00000341423 STK31Q9BXU1 1019 aa10.84□□□□□ -0.67
HMGB1-203ENST00000341423 TFCP2L1Q9NZI6 479 aa10.84□□□□□ -0.67
HMGB1-203ENST00000341423 NUTM2GQ5VZR2 741 aa10.84□□□□□ -0.67
HMGB1-203ENST00000341423 SPDYE4A6NLX3 237 aa10.83□□□□□ -0.68
HMGB1-203ENST00000341423 CABP2Q9NPB3 220 aa10.83□□□□□ -0.68
HMGB1-203ENST00000341423 USP21Q9UK80 565 aa10.83□□□□□ -0.68
HMGB1-203ENST00000341423 SYNJ1O43426 1573 aa10.82□□□□□ -0.68
HMGB1-203ENST00000341423 CALD1Q05682 793 aaKnown RBP10.82□□□□□ -0.68
HMGB1-203ENST00000341423 SENP3-EIF4A1A0A087X0R7 540 aa10.82□□□□□ -0.68
HMGB1-203ENST00000341423 TRPC5Q9UL62 973 aaPredicted RBP10.82□□□□□ -0.68
HMGB1-203ENST00000341423 DPY19L2Q6NUT2 758 aa10.82□□□□□ -0.68
HMGB1-203ENST00000341423 YTHDC1Q96MU7 727 aaKnown RBP10.81□□□□□ -0.68
HMGB1-203ENST00000341423 VPS53Q5VIR6 699 aa10.81□□□□□ -0.68
HMGB1-203ENST00000341423 MYO15BQ96JP2 1530 aa10.81□□□□□ -0.68
HMGB1-203ENST00000341423 CAPN15O75808 1086 aa10.81□□□□□ -0.68
HMGB1-203ENST00000341423 SAMD1Q6SPF0 538 aaPredicted RBP10.81□□□□□ -0.68
HMGB1-203ENST00000341423 QTRT2Q9H974 415 aaKnown RBP10.81□□□□□ -0.68
HMGB1-203ENST00000341423 BCL2L13Q9BXK5 485 aa10.81□□□□□ -0.68
HMGB1-203ENST00000341423 APBA3O96018 575 aa10.8□□□□□ -0.68
HMGB1-203ENST00000341423 MYCNP04198 464 aaPredicted RBP10.8□□□□□ -0.68
HMGB1-203ENST00000341423 PRM3Q9NNZ6 103 aa10.8□□□□□ -0.68
HMGB1-203ENST00000341423 SMC4Q9NTJ3 1288 aa10.8□□□□□ -0.68
HMGB1-203ENST00000341423 PHLDB1Q86UU1 1377 aa10.8□□□□□ -0.68
HMGB1-203ENST00000341423 XPCQ01831 940 aaPredicted RBP10.8□□□□□ -0.68
HMGB1-203ENST00000341423 CHMP4BQ9H444 224 aaKnown RBP10.8□□□□□ -0.68
HMGB1-203ENST00000341423 SALL2Q9Y467 1007 aaPredicted RBP10.8□□□□□ -0.68
HMGB1-203ENST00000341423 DHX57Q6P158 1386 aaKnown RBP10.79□□□□□ -0.68
HMGB1-203ENST00000341423 SCAPERQ9BY12 1400 aa10.79□□□□□ -0.68
HMGB1-203ENST00000341423 SNAPC4Q5SXM2 1469 aa10.79□□□□□ -0.68
HMGB1-203ENST00000341423 NGEFQ8N5V2 710 aa10.79□□□□□ -0.68
HMGB1-203ENST00000341423 JDP2Q8WYK2 163 aa10.79□□□□□ -0.68
HMGB1-203ENST00000341423 NEXNQ0ZGT2 675 aa10.78□□□□□ -0.68
HMGB1-203ENST00000341423 ZNF526Q8TF50 670 aaPredicted RBP10.78□□□□□ -0.68
HMGB1-203ENST00000341423 NPHP3Q7Z494 1330 aa10.78□□□□□ -0.68
HMGB1-203ENST00000341423 CRBNQ96SW2 442 aa10.78□□□□□ -0.68
HMGB1-203ENST00000341423 HSP90AA1P07900 732 aaKnown RBP10.78□□□□□ -0.68
HMGB1-203ENST00000341423 RBM5P52756 815 aaKnown RBP eCLIP10.78□□□□□ -0.68
HMGB1-203ENST00000341423 NCKAP5LQ9HCH0 1330 aa10.78□□□□□ -0.68
HMGB1-203ENST00000341423 DCAF1Q9Y4B6 1507 aa10.78□□□□□ -0.68
HMGB1-203ENST00000341423 ZC3H6P61129 1189 aaKnown RBP10.78□□□□□ -0.68
HMGB1-203ENST00000341423 HDAC9Q9UKV0 1011 aa10.77□□□□□ -0.68
HMGB1-203ENST00000341423 FAM177BA6PVY3 158 aa10.77□□□□□ -0.69
HMGB1-203ENST00000341423 ZNF219Q9P2Y4 722 aaPredicted RBP10.77□□□□□ -0.69
HMGB1-203ENST00000341423 EVC2Q86UK5 1308 aa10.77□□□□□ -0.69
HMGB1-203ENST00000341423 ZNF622Q969S3 477 aaKnown RBP eCLIP10.77□□□□□ -0.698e-11■■■■■ 55.4
HMGB1-203ENST00000341423 HSP90AB1P08238 724 aaKnown RBP10.76□□□□□ -0.69
HMGB1-203ENST00000341423 DENND4BO75064 1496 aaPredicted RBP10.76□□□□□ -0.69
HMGB1-203ENST00000341423 SPG7Q9UQ90 795 aa10.76□□□□□ -0.69
HMGB1-203ENST00000341423 RAPGEF2Q9Y4G8 1499 aa10.76□□□□□ -0.69
HMGB1-203ENST00000341423 KIF6Q6ZMV9 814 aa10.75□□□□□ -0.69
HMGB1-203ENST00000341423 ZNF652Q9Y2D9 606 aa10.75□□□□□ -0.69
HMGB1-203ENST00000341423 ILDR1Q86SU0 546 aaPredicted RBP10.75□□□□□ -0.69
HMGB1-203ENST00000341423 RAD54L2Q9Y4B4 1467 aa10.75□□□□□ -0.69
HMGB1-203ENST00000341423 SMG6Q86US8 1419 aaKnown RBP10.75□□□□□ -0.69
HMGB1-203ENST00000341423 FAM135AQ9P2D6 1515 aa10.74□□□□□ -0.69
HMGB1-203ENST00000341423 PARP3Q9Y6F1 533 aa10.74□□□□□ -0.69
HMGB1-203ENST00000341423 FOXO3O43524 673 aa10.74□□□□□ -0.69
HMGB1-203ENST00000341423 NAP1L2Q9ULW6 460 aaPredicted RBP10.74□□□□□ -0.69
HMGB1-203ENST00000341423 RFC4P35249 363 aa10.74□□□□□ -0.69
HMGB1-203ENST00000341423 LMOD3Q0VAK6 560 aa10.74□□□□□ -0.69
HMGB1-203ENST00000341423 BICDL1Q6ZP65 573 aa10.72□□□□□ -0.69
HMGB1-203ENST00000341423 DDB1Q16531 1140 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms