RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 KRT85P78386 507 aa22.59■■□□□ 1.21
PTCD3-220ENST00000627371 CDC42EP1Q00587 391 aa22.59■■□□□ 1.21
PTCD3-220ENST00000627371 SPECC1Q5M775 1068 aa22.59■■□□□ 1.21
PTCD3-220ENST00000627371 RASIP1Q5U651 963 aa22.59■■□□□ 1.21
PTCD3-220ENST00000627371 PADI6Q6TGC4 694 aa22.59■■□□□ 1.21
PTCD3-220ENST00000627371 KCNK18Q7Z418 384 aa22.59■■□□□ 1.21
PTCD3-220ENST00000627371 PSPC1Q8WXF1 523 aaKnown RBP22.59■■□□□ 1.21
PTCD3-220ENST00000627371 SYMPKQ92797 1274 aaKnown RBP22.59■■□□□ 1.21
PTCD3-220ENST00000627371 TMEM143Q96AN5 459 aa22.59■■□□□ 1.21
PTCD3-220ENST00000627371 OSMRQ99650 979 aa22.59■■□□□ 1.21
PTCD3-220ENST00000627371 MTIF3Q9H2K0 278 aaKnown RBP22.59■■□□□ 1.21
PTCD3-220ENST00000627371 ADAMTS10Q9H324 1103 aa22.59■■□□□ 1.21
PTCD3-220ENST00000627371 CDHR5Q9HBB8 845 aa22.59■■□□□ 1.21
PTCD3-220ENST00000627371 LAMA2P24043 3122 aaKnown RBP22.59■■□□□ 1.21
PTCD3-220ENST00000627371 BAIAP3O94812 1187 aa22.58■■□□□ 1.21
PTCD3-220ENST00000627371 TCTN1Q2MV58 587 aa22.58■■□□□ 1.21
PTCD3-220ENST00000627371 USP49Q70CQ1 688 aa22.58■■□□□ 1.21
PTCD3-220ENST00000627371 RHPN2Q8IUC4 686 aa22.58■■□□□ 1.21
PTCD3-220ENST00000627371 MCPH1Q8NEM0 835 aa22.58■■□□□ 1.21
PTCD3-220ENST00000627371 DBF4BQ8NFT6 615 aa22.58■■□□□ 1.21
PTCD3-220ENST00000627371 SEPT8Q92599 483 aa22.58■■□□□ 1.21
PTCD3-220ENST00000627371 APBB2Q92870 758 aa22.58■■□□□ 1.21
PTCD3-220ENST00000627371 EPSTI1Q96J88 318 aa22.58■■□□□ 1.21
PTCD3-220ENST00000627371 IFIH1Q9BYX4 1025 aaKnown RBP22.58■■□□□ 1.21
PTCD3-220ENST00000627371 GBF1Q92538 1859 aa22.58■■□□□ 1.2
PTCD3-220ENST00000627371 TXLNAP40222 546 aa22.57■■□□□ 1.2
PTCD3-220ENST00000627371 KARSQ15046 597 aaKnown RBP22.57■■□□□ 1.2
PTCD3-220ENST00000627371 ZNF410Q86VK4 478 aa22.57■■□□□ 1.2
PTCD3-220ENST00000627371 RASSF8Q8NHQ8 419 aa22.57■■□□□ 1.2
PTCD3-220ENST00000627371 TMEM40Q8WWA1 233 aa22.57■■□□□ 1.2
PTCD3-220ENST00000627371 PLIN2Q99541 437 aa22.57■■□□□ 1.2
PTCD3-220ENST00000627371 AGO3Q9H9G7 860 aaKnown RBP22.57■■□□□ 1.2
PTCD3-220ENST00000627371 RCOR1Q9UKL0 485 aa22.57■■□□□ 1.2
PTCD3-220ENST00000627371 CIZ1Q9ULV3 898 aaPredicted RBP22.57■■□□□ 1.2
PTCD3-220ENST00000627371 COL4A3BPQ9Y5P4 624 aa22.57■■□□□ 1.2
PTCD3-220ENST00000627371 RBAK-RBAKDNI3L0D1 243 aa22.56■■□□□ 1.2
PTCD3-220ENST00000627371 CUTAO60888 179 aa22.56■■□□□ 1.2
PTCD3-220ENST00000627371 CYP11B2P19099 503 aa22.56■■□□□ 1.2
PTCD3-220ENST00000627371 PLCG1P19174 1290 aa22.56■■□□□ 1.2
PTCD3-220ENST00000627371 NCLP19338 710 aaKnown RBP22.56■■□□□ 1.2
PTCD3-220ENST00000627371 PRPF31Q8WWY3 499 aaKnown RBP22.56■■□□□ 1.2
PTCD3-220ENST00000627371 NLRP7Q8WX94 980 aa22.56■■□□□ 1.2
PTCD3-220ENST00000627371 CHAMP1Q96JM3 812 aa22.56■■□□□ 1.2
PTCD3-220ENST00000627371 SCLT1Q96NL6 688 aa22.56■■□□□ 1.2
PTCD3-220ENST00000627371 TSHZ2Q9NRE2 1034 aa22.56■■□□□ 1.2
PTCD3-220ENST00000627371 CXXC1Q9P0U4 656 aaPredicted RBP22.56■■□□□ 1.2
PTCD3-220ENST00000627371 ABHD14A-ACY1A0A1B0GW23 586 aa22.55■■□□□ 1.2
PTCD3-220ENST00000627371 ASAP2O43150 1006 aa22.55■■□□□ 1.2
PTCD3-220ENST00000627371 EFCAB14O75071 495 aa22.55■■□□□ 1.2
PTCD3-220ENST00000627371 CD52P31358 61 aa22.55■■□□□ 1.2
PTCD3-220ENST00000627371 ARL2P36404 184 aa22.55■■□□□ 1.2
PTCD3-220ENST00000627371 LAMTOR4Q0VGL1 99 aa22.55■■□□□ 1.2
PTCD3-220ENST00000627371 PAK2Q13177 524 aa22.55■■□□□ 1.2
PTCD3-220ENST00000627371 IKBKEQ14164 716 aa22.55■■□□□ 1.2
PTCD3-220ENST00000627371 MXD4Q14582 209 aaPredicted RBP22.55■■□□□ 1.2
PTCD3-220ENST00000627371 KSR1Q8IVT5 923 aa22.55■■□□□ 1.2
PTCD3-220ENST00000627371 ZNF668Q96K58 619 aaPredicted RBP22.55■■□□□ 1.2
PTCD3-220ENST00000627371 NLRP4Q96MN2 994 aa22.55■■□□□ 1.2
PTCD3-220ENST00000627371 CCDC39Q9UFE4 941 aa22.55■■□□□ 1.2
PTCD3-220ENST00000627371 NOC2LQ9Y3T9 749 aaKnown RBP22.55■■□□□ 1.2
PTCD3-220ENST00000627371 RBM19Q9Y4C8 960 aaKnown RBP22.55■■□□□ 1.2
PTCD3-220ENST00000627371 A0A087WZ62 844 aa22.54■■□□□ 1.2
PTCD3-220ENST00000627371 ZBBXA8MT70 800 aa22.54■■□□□ 1.2
PTCD3-220ENST00000627371 RPS6KA5O75582 802 aa22.54■■□□□ 1.2
PTCD3-220ENST00000627371 DARSP14868 501 aaKnown RBP22.54■■□□□ 1.2
PTCD3-220ENST00000627371 EIF4BP23588 611 aaKnown RBP22.54■■□□□ 1.2
PTCD3-220ENST00000627371 ME1P48163 572 aa22.54■■□□□ 1.2
PTCD3-220ENST00000627371 LRIT3Q3SXY7 679 aa22.54■■□□□ 1.2
PTCD3-220ENST00000627371 ODR4Q5SWX8 454 aa22.54■■□□□ 1.2
PTCD3-220ENST00000627371 AXDND1Q5T1B0 1012 aaPredicted RBP22.54■■□□□ 1.2
PTCD3-220ENST00000627371 FAM228AQ86W67 206 aa22.54■■□□□ 1.2
PTCD3-220ENST00000627371 SYT2Q8N9I0 419 aaPredicted RBP22.54■■□□□ 1.2
PTCD3-220ENST00000627371 LRRC15Q8TF66 581 aa22.54■■□□□ 1.2
PTCD3-220ENST00000627371 LEO1Q8WVC0 666 aaPredicted RBP22.54■■□□□ 1.2
PTCD3-220ENST00000627371 FDXACB1Q9BRP7 624 aaPredicted RBP22.54■■□□□ 1.2
PTCD3-220ENST00000627371 GCOM2Q9BZD3 368 aaPredicted RBP22.54■■□□□ 1.2
PTCD3-220ENST00000627371 POLR3FQ9H1D9 316 aaPredicted RBP22.54■■□□□ 1.2
PTCD3-220ENST00000627371 ERVK-5Q9HDB9 667 aa22.54■■□□□ 1.2
PTCD3-220ENST00000627371 GPRC5CQ9NQ84 441 aa22.54■■□□□ 1.2
PTCD3-220ENST00000627371 BLOC1S4Q9NUP1 217 aa22.54■■□□□ 1.2
PTCD3-220ENST00000627371 PADI3Q9ULW8 664 aa22.54■■□□□ 1.2
PTCD3-220ENST00000627371 PCDHA7Q9UN72 937 aa22.54■■□□□ 1.2
PTCD3-220ENST00000627371 PLA2G4BP0C869 781 aa22.53■■□□□ 1.2
PTCD3-220ENST00000627371 GLRA2P23416 452 aa22.53■■□□□ 1.2
PTCD3-220ENST00000627371 SLC12A3P55017 1021 aa22.53■■□□□ 1.2
PTCD3-220ENST00000627371 FAM102BQ5T8I3 360 aa22.53■■□□□ 1.2
PTCD3-220ENST00000627371 RINT1Q6NUQ1 792 aa22.53■■□□□ 1.2
PTCD3-220ENST00000627371 MAEAQ7L5Y9 396 aa22.53■■□□□ 1.2
PTCD3-220ENST00000627371 ASAP3Q8TDY4 903 aa22.53■■□□□ 1.2
PTCD3-220ENST00000627371 SPATA32Q96LK8 384 aa22.53■■□□□ 1.2
PTCD3-220ENST00000627371 SCAND2PQ9GZW5 306 aaPredicted RBP22.53■■□□□ 1.2
PTCD3-220ENST00000627371 IFT122Q9HBG6 1241 aa22.53■■□□□ 1.2
PTCD3-220ENST00000627371 TTC3P53804 2025 aa22.52■■□□□ 1.2
PTCD3-220ENST00000627371 GPR182O15218 404 aa22.52■■□□□ 1.2
PTCD3-220ENST00000627371 KCNJ6P48051 423 aa22.52■■□□□ 1.2
PTCD3-220ENST00000627371 WDR5P61964 334 aaKnown RBP22.52■■□□□ 1.2
PTCD3-220ENST00000627371 HABP4Q5JVS0 413 aaKnown RBP22.52■■□□□ 1.2
PTCD3-220ENST00000627371 SHC4Q6S5L8 630 aa22.52■■□□□ 1.2
PTCD3-220ENST00000627371 FAM43BQ6ZT52 329 aaPredicted RBP22.52■■□□□ 1.2
PTCD3-220ENST00000627371 C1orf186Q6ZWK4 172 aa22.52■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms