RNA–Protein interactions for RNA: ENST00000620514.1

HMGN3-203, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 3 BASIC

Gene HMGN3, Length 1,010 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-203ENST00000620514 SCLT1Q96NL6 688 aa19.27■□□□□ 0.68
HMGN3-203ENST00000620514 NAP1L4Q99733 375 aaKnown RBP19.27■□□□□ 0.68
HMGN3-203ENST00000620514 NSUN3Q9H649 340 aaKnown RBP19.27■□□□□ 0.68
HMGN3-203ENST00000620514 ALG13Q9NP73 1137 aaKnown RBP19.27■□□□□ 0.68
HMGN3-203ENST00000620514 MYO7AQ13402 2215 aa19.27■□□□□ 0.67
HMGN3-203ENST00000620514 ATG2AQ2TAZ0 1938 aa19.26■□□□□ 0.67
HMGN3-203ENST00000620514 TBKBP1A7MCY6 615 aa19.26■□□□□ 0.67
HMGN3-203ENST00000620514 CSDE1O75534 798 aaKnown RBP19.26■□□□□ 0.67
HMGN3-203ENST00000620514 QARSP47897 775 aaKnown RBP19.26■□□□□ 0.67
HMGN3-203ENST00000620514 NPEPPSP55786 919 aa19.26■□□□□ 0.67
HMGN3-203ENST00000620514 FAM189BP81408 668 aa19.26■□□□□ 0.67
HMGN3-203ENST00000620514 NCAPH2Q6IBW4 605 aa19.26■□□□□ 0.67
HMGN3-203ENST00000620514 FAM43BQ6ZT52 329 aaPredicted RBP19.26■□□□□ 0.67
HMGN3-203ENST00000620514 CCDC83Q8IWF9 413 aa19.26■□□□□ 0.67
HMGN3-203ENST00000620514 ZNF579Q8NAF0 562 aaKnown RBP19.26■□□□□ 0.67
HMGN3-203ENST00000620514 KIF2CQ99661 725 aa19.26■□□□□ 0.67
HMGN3-203ENST00000620514 PLVAPQ9BX97 442 aa19.26■□□□□ 0.67
HMGN3-203ENST00000620514 HCSTQ9UBK5 93 aa19.26■□□□□ 0.67
HMGN3-203ENST00000620514 PLAGL2Q9UPG8 496 aa19.26■□□□□ 0.67
HMGN3-203ENST00000620514 LIMCH1Q9UPQ0 1083 aa19.26■□□□□ 0.67
HMGN3-203ENST00000620514 MAFO75444 373 aaPredicted RBP19.25■□□□□ 0.67
HMGN3-203ENST00000620514 ITGB1P05556 798 aa19.25■□□□□ 0.67
HMGN3-203ENST00000620514 P4HBP07237 508 aaKnown RBP19.25■□□□□ 0.67
HMGN3-203ENST00000620514 FGFR1P11362 822 aa19.25■□□□□ 0.67
HMGN3-203ENST00000620514 KCNA5P22460 613 aa19.25■□□□□ 0.67
HMGN3-203ENST00000620514 SPIRE1Q08AE8 756 aa19.25■□□□□ 0.67
HMGN3-203ENST00000620514 TRIM29Q14134 588 aa19.25■□□□□ 0.67
HMGN3-203ENST00000620514 EPHA7Q15375 998 aa19.25■□□□□ 0.67
HMGN3-203ENST00000620514 ZNF710Q8N1W2 664 aa19.25■□□□□ 0.67
HMGN3-203ENST00000620514 KLHL23Q8NBE8 558 aa19.25■□□□□ 0.67
HMGN3-203ENST00000620514 LMAN2LQ9H0V9 348 aa19.25■□□□□ 0.67
HMGN3-203ENST00000620514 TMEM161AQ9NX61 479 aa19.25■□□□□ 0.67
HMGN3-203ENST00000620514 RGL1Q9NZL6 768 aa19.25■□□□□ 0.67
HMGN3-203ENST00000620514 SUCLA2Q9P2R7 463 aaPredicted RBP19.25■□□□□ 0.67
HMGN3-203ENST00000620514 A0A087WZ62 844 aa19.24■□□□□ 0.67
HMGN3-203ENST00000620514 BAG4O95429 457 aaKnown RBP19.24■□□□□ 0.67
HMGN3-203ENST00000620514 DNAJB1P25685 340 aa19.24■□□□□ 0.67
HMGN3-203ENST00000620514 GUCY1B3Q02153 619 aa19.24■□□□□ 0.67
HMGN3-203ENST00000620514 CAMK1Q14012 370 aa19.24■□□□□ 0.67
HMGN3-203ENST00000620514 KSR1Q8IVT5 923 aa19.24■□□□□ 0.67
HMGN3-203ENST00000620514 SPPL3Q8TCT6 385 aa19.24■□□□□ 0.67
HMGN3-203ENST00000620514 P2RX5Q93086 422 aa19.24■□□□□ 0.67
HMGN3-203ENST00000620514 DYDC2Q96IM9 177 aa19.24■□□□□ 0.67
HMGN3-203ENST00000620514 FDXACB1Q9BRP7 624 aaPredicted RBP19.24■□□□□ 0.67
HMGN3-203ENST00000620514 LXNQ9BS40 222 aa19.24■□□□□ 0.67
HMGN3-203ENST00000620514 ATP6V0A4Q9HBG4 840 aa19.24■□□□□ 0.67
HMGN3-203ENST00000620514 CYP26B1Q9NR63 512 aa19.24■□□□□ 0.67
HMGN3-203ENST00000620514 RNF19AQ9NV58 838 aa19.24■□□□□ 0.67
HMGN3-203ENST00000620514 FNDC1Q4ZHG4 1894 aaPredicted RBP19.24■□□□□ 0.67
HMGN3-203ENST00000620514 ZBTB39O15060 712 aa19.23■□□□□ 0.67
HMGN3-203ENST00000620514 ZSCAN20P17040 1043 aaPredicted RBP19.23■□□□□ 0.67
HMGN3-203ENST00000620514 DNM2P50570 870 aa19.23■□□□□ 0.67
HMGN3-203ENST00000620514 CTTNQ14247 550 aaKnown RBP19.23■□□□□ 0.67
HMGN3-203ENST00000620514 LEXMQ3ZCV2 418 aa19.23■□□□□ 0.67
HMGN3-203ENST00000620514 PPP4R3CPQ6ZMV5 832 aa19.23■□□□□ 0.67
HMGN3-203ENST00000620514 RHPN2Q8IUC4 686 aa19.23■□□□□ 0.67
HMGN3-203ENST00000620514 SLFN12Q8IYM2 578 aa19.23■□□□□ 0.67
HMGN3-203ENST00000620514 GADD45GIP1Q8TAE8 222 aaPredicted RBP19.23■□□□□ 0.67
HMGN3-203ENST00000620514 CEP170P1Q96L14 293 aa19.23■□□□□ 0.67
HMGN3-203ENST00000620514 GCOM2Q9BZD3 368 aaPredicted RBP19.23■□□□□ 0.67
HMGN3-203ENST00000620514 ELAC1Q9H777 363 aaKnown RBP19.23■□□□□ 0.67
HMGN3-203ENST00000620514 BMP2KQ9NSY1 1161 aaPredicted RBP19.23■□□□□ 0.67
HMGN3-203ENST00000620514 H3BQ06 376 aaPredicted RBP19.22■□□□□ 0.67
HMGN3-203ENST00000620514 DKC1O60832 514 aaKnown RBP eCLIP19.22■□□□□ 0.67
HMGN3-203ENST00000620514 GTF2F1P35269 517 aaKnown RBP eCLIP19.22■□□□□ 0.67
HMGN3-203ENST00000620514 CYP4A11Q02928 519 aa19.22■□□□□ 0.67
HMGN3-203ENST00000620514 HYAL1Q12794 435 aa19.22■□□□□ 0.67
HMGN3-203ENST00000620514 CALCRLQ16602 461 aa19.22■□□□□ 0.67
HMGN3-203ENST00000620514 SPOUT1Q5T280 376 aaKnown RBP19.22■□□□□ 0.67
HMGN3-203ENST00000620514 EP400NLQ6ZTU2 488 aa19.22■□□□□ 0.67
HMGN3-203ENST00000620514 ECHDC2Q86YB7 292 aa19.22■□□□□ 0.67
HMGN3-203ENST00000620514 C4orf19Q8IY42 314 aa19.22■□□□□ 0.67
HMGN3-203ENST00000620514 PABPC5Q96DU9 382 aaKnown RBP19.22■□□□□ 0.67
HMGN3-203ENST00000620514 TYW1Q9NV66 732 aaKnown RBP19.22■□□□□ 0.67
HMGN3-203ENST00000620514 RNF216Q9NWF9 866 aaPredicted RBP19.22■□□□□ 0.67
HMGN3-203ENST00000620514 ATP2B1P20020 1258 aa19.21■□□□□ 0.67
HMGN3-203ENST00000620514 YWHABP31946 246 aaKnown RBP19.21■□□□□ 0.67
HMGN3-203ENST00000620514 IRS1P35568 1242 aa19.21■□□□□ 0.67
HMGN3-203ENST00000620514 COL19A1Q14993 1142 aa19.21■□□□□ 0.67
HMGN3-203ENST00000620514 NAALADL2Q58DX5 795 aa19.21■□□□□ 0.67
HMGN3-203ENST00000620514 RNF169Q8NCN4 708 aa19.21■□□□□ 0.67
HMGN3-203ENST00000620514 NEK9Q8TD19 979 aa19.21■□□□□ 0.67
HMGN3-203ENST00000620514 POF1BQ8WVV4 589 aa19.21■□□□□ 0.67
HMGN3-203ENST00000620514 NLRP4Q96MN2 994 aa19.21■□□□□ 0.67
HMGN3-203ENST00000620514 CASD1Q96PB1 797 aa19.21■□□□□ 0.67
HMGN3-203ENST00000620514 JPH2Q9BR39 696 aaPredicted RBP19.21■□□□□ 0.67
HMGN3-203ENST00000620514 CWH43Q9H720 699 aa19.21■□□□□ 0.67
HMGN3-203ENST00000620514 CLDND1Q9NY35 253 aa19.21■□□□□ 0.67
HMGN3-203ENST00000620514 NCOR1O75376 2440 aa19.21■□□□□ 0.67
HMGN3-203ENST00000620514 SLITRK3O94933 977 aa19.2■□□□□ 0.66
HMGN3-203ENST00000620514 TXKP42681 527 aa19.2■□□□□ 0.66
HMGN3-203ENST00000620514 POLGP54098 1239 aaPredicted RBP19.2■□□□□ 0.66
HMGN3-203ENST00000620514 CDC42EP1Q00587 391 aa19.2■□□□□ 0.66
HMGN3-203ENST00000620514 LRRC55Q6ZSA7 311 aa19.2■□□□□ 0.66
HMGN3-203ENST00000620514 ZNF410Q86VK4 478 aa19.2■□□□□ 0.66
HMGN3-203ENST00000620514 TPH2Q8IWU9 490 aa19.2■□□□□ 0.66
HMGN3-203ENST00000620514 COLGALT1Q8NBJ5 622 aa19.2■□□□□ 0.66
HMGN3-203ENST00000620514 SLC7A3Q8WY07 619 aa19.2■□□□□ 0.66
HMGN3-203ENST00000620514 TMEM143Q96AN5 459 aa19.2■□□□□ 0.66
HMGN3-203ENST00000620514 C8orf76Q96K31 380 aa19.2■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms