RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 TMEM117Q9H0C3 514 aa19.31■□□□□ 0.68
CLN3-216ENST00000565316 RNF19AQ9NV58 838 aa19.31■□□□□ 0.68
CLN3-216ENST00000565316 CHMP2AO43633 222 aa19.3■□□□□ 0.68
CLN3-216ENST00000565316 FGF18O76093 207 aa19.3■□□□□ 0.68
CLN3-216ENST00000565316 STBD1O95210 358 aa19.3■□□□□ 0.68
CLN3-216ENST00000565316 DARSP14868 501 aaKnown RBP19.3■□□□□ 0.68
CLN3-216ENST00000565316 NRIP1P48552 1158 aa19.3■□□□□ 0.68
CLN3-216ENST00000565316 NDUFV1P49821 464 aa19.3■□□□□ 0.68
CLN3-216ENST00000565316 GPC3P51654 580 aa19.3■□□□□ 0.68
CLN3-216ENST00000565316 SPOUT1Q5T280 376 aaKnown RBP19.3■□□□□ 0.68
CLN3-216ENST00000565316 GALNT17Q6IS24 598 aa19.3■□□□□ 0.68
CLN3-216ENST00000565316 MOXD1Q6UVY6 613 aa19.3■□□□□ 0.68
CLN3-216ENST00000565316 BLIDQ8IZY5 108 aa19.3■□□□□ 0.68
CLN3-216ENST00000565316 CASD1Q96PB1 797 aa19.3■□□□□ 0.68
CLN3-216ENST00000565316 CEP89Q96ST8 783 aa19.3■□□□□ 0.68
CLN3-216ENST00000565316 UPF3BQ9BZI7 483 aaKnown RBP19.3■□□□□ 0.68
CLN3-216ENST00000565316 HCSTQ9UBK5 93 aa19.3■□□□□ 0.68
CLN3-216ENST00000565316 PCDHGC5Q9Y5F6 944 aa19.3■□□□□ 0.68
CLN3-216ENST00000565316 CPLX1O14810 134 aa19.29■□□□□ 0.68
CLN3-216ENST00000565316 FSCN2O14926 492 aa19.29■□□□□ 0.68
CLN3-216ENST00000565316 HOXA2O43364 376 aa19.29■□□□□ 0.68
CLN3-216ENST00000565316 TDP2O95551 362 aa19.29■□□□□ 0.68
CLN3-216ENST00000565316 GLP2RO95838 553 aa19.29■□□□□ 0.68
CLN3-216ENST00000565316 LAG3P18627 525 aa19.29■□□□□ 0.68
CLN3-216ENST00000565316 TBC1D8BQ0IIM8 1120 aa19.29■□□□□ 0.68
CLN3-216ENST00000565316 PDE12Q6L8Q7 609 aaKnown RBP19.29■□□□□ 0.68
CLN3-216ENST00000565316 LRRC55Q6ZSA7 311 aa19.29■□□□□ 0.68
CLN3-216ENST00000565316 SMRP1Q8NCR6 262 aa19.29■□□□□ 0.68
CLN3-216ENST00000565316 ETNPPLQ8TBG4 499 aa19.29■□□□□ 0.68
CLN3-216ENST00000565316 TLR9Q9NR96 1032 aa19.29■□□□□ 0.68
CLN3-216ENST00000565316 LZTS1Q9Y250 596 aa19.29■□□□□ 0.68
CLN3-216ENST00000565316 WDR81Q562E7 1941 aa19.29■□□□□ 0.68
CLN3-216ENST00000565316 MUC6Q6W4X9 2439 aa19.29■□□□□ 0.68
CLN3-216ENST00000565316 IGKV6-21A0A0C4DH24 114 aa19.28■□□□□ 0.68
CLN3-216ENST00000565316 ZSCAN20P17040 1043 aaPredicted RBP19.28■□□□□ 0.68
CLN3-216ENST00000565316 ERVFC1P60507 584 aa19.28■□□□□ 0.68
CLN3-216ENST00000565316 PLCB3Q01970 1234 aa19.28■□□□□ 0.68
CLN3-216ENST00000565316 XKR3Q5GH77 459 aa19.28■□□□□ 0.68
CLN3-216ENST00000565316 MIER3Q7Z3K6 550 aa19.28■□□□□ 0.68
CLN3-216ENST00000565316 RBM23Q86U06 439 aaKnown RBP19.28■□□□□ 0.68
CLN3-216ENST00000565316 ECHDC2Q86YB7 292 aa19.28■□□□□ 0.68
CLN3-216ENST00000565316 THNSL1Q8IYQ7 743 aa19.28■□□□□ 0.68
CLN3-216ENST00000565316 CDCA3Q99618 268 aaPredicted RBP19.28■□□□□ 0.68
CLN3-216ENST00000565316 TLE6Q9H808 572 aa19.28■□□□□ 0.68
CLN3-216ENST00000565316 PLXNA4Q9HCM2 1894 aa19.28■□□□□ 0.68
CLN3-216ENST00000565316 PIEZO1Q92508 2521 aa19.28■□□□□ 0.68
CLN3-216ENST00000565316 FSD2A1L4K1 749 aa19.27■□□□□ 0.68
CLN3-216ENST00000565316 CDC42EP1Q00587 391 aa19.27■□□□□ 0.68
CLN3-216ENST00000565316 CPLX2Q6PUV4 134 aaKnown RBP19.27■□□□□ 0.68
CLN3-216ENST00000565316 ZNF598Q86UK7 904 aaKnown RBP19.27■□□□□ 0.68
CLN3-216ENST00000565316 MICAL1Q8TDZ2 1067 aa19.27■□□□□ 0.68
CLN3-216ENST00000565316 AIFM3Q96NN9 605 aa19.27■□□□□ 0.68
CLN3-216ENST00000565316 LARP6Q9BRS8 491 aaKnown RBP19.27■□□□□ 0.68
CLN3-216ENST00000565316 A0A0U1RQF3 1178 aa19.26■□□□□ 0.67
CLN3-216ENST00000565316 DRP2Q13474 957 aa19.26■□□□□ 0.67
CLN3-216ENST00000565316 NONOQ15233 471 aaKnown RBP eCLIP19.26■□□□□ 0.67
CLN3-216ENST00000565316 DUSP6Q16828 381 aa19.26■□□□□ 0.67
CLN3-216ENST00000565316 HERC4Q5GLZ8 1057 aaPredicted RBP19.26■□□□□ 0.67
CLN3-216ENST00000565316 VN1R2Q8NFZ6 395 aa19.26■□□□□ 0.67
CLN3-216ENST00000565316 MRPS27Q92552 414 aaKnown RBP19.26■□□□□ 0.67
CLN3-216ENST00000565316 ZNF668Q96K58 619 aaPredicted RBP19.26■□□□□ 0.67
CLN3-216ENST00000565316 PDRG1Q9NUG6 133 aa19.26■□□□□ 0.67
CLN3-216ENST00000565316 BARX2Q9UMQ3 279 aaPredicted RBP19.26■□□□□ 0.67
CLN3-216ENST00000565316 PER2O15055 1255 aa19.25■□□□□ 0.67
CLN3-216ENST00000565316 EOMESO95936 686 aa19.25■□□□□ 0.67
CLN3-216ENST00000565316 STK3Q13188 491 aa19.25■□□□□ 0.67
CLN3-216ENST00000565316 KCNC3Q14003 757 aa19.25■□□□□ 0.67
CLN3-216ENST00000565316 CLLU1OSQ5K130 101 aa19.25■□□□□ 0.67
CLN3-216ENST00000565316 KCNT2Q6UVM3 1135 aa19.25■□□□□ 0.67
CLN3-216ENST00000565316 TMEM184AQ6ZMB5 413 aa19.25■□□□□ 0.67
CLN3-216ENST00000565316 KRT25Q7Z3Z0 450 aa19.25■□□□□ 0.67
CLN3-216ENST00000565316 LRRC43Q8N309 656 aa19.25■□□□□ 0.67
CLN3-216ENST00000565316 NLRP7Q8WX94 980 aa19.25■□□□□ 0.67
CLN3-216ENST00000565316 CHST12Q9NRB3 414 aa19.25■□□□□ 0.67
CLN3-216ENST00000565316 SEPT9Q9UHD8 586 aaPredicted RBP19.25■□□□□ 0.67
CLN3-216ENST00000565316 DDX25Q9UHL0 483 aaKnown RBP19.25■□□□□ 0.67
CLN3-216ENST00000565316 TMEM150BA6NC51 233 aa19.25■□□□□ 0.67
CLN3-216ENST00000565316 LOC730098B7Z3J9 87 aa19.25■□□□□ 0.67
CLN3-216ENST00000565316 MAFO75444 373 aaPredicted RBP19.25■□□□□ 0.67
CLN3-216ENST00000565316 ATF7P17544 494 aaPredicted RBP19.25■□□□□ 0.67
CLN3-216ENST00000565316 FGFR4P22455 802 aa19.25■□□□□ 0.67
CLN3-216ENST00000565316 PPM1AP35813 382 aa19.25■□□□□ 0.67
CLN3-216ENST00000565316 CBX2Q14781 532 aaPredicted RBP19.25■□□□□ 0.67
CLN3-216ENST00000565316 INF2Q27J81 1249 aa19.25■□□□□ 0.67
CLN3-216ENST00000565316 MTERF2Q49AM1 385 aa19.25■□□□□ 0.67
CLN3-216ENST00000565316 RNF135Q8IUD6 432 aa19.25■□□□□ 0.67
CLN3-216ENST00000565316 ZNF558Q96NG5 402 aa19.25■□□□□ 0.67
CLN3-216ENST00000565316 SCLT1Q96NL6 688 aa19.25■□□□□ 0.67
CLN3-216ENST00000565316 PHF20Q9BVI0 1012 aa19.25■□□□□ 0.67
CLN3-216ENST00000565316 TRAIPQ9BWF2 469 aa19.25■□□□□ 0.67
CLN3-216ENST00000565316 GCOM2Q9BZD3 368 aaPredicted RBP19.25■□□□□ 0.67
CLN3-216ENST00000565316 DACT1Q9NYF0 836 aa19.25■□□□□ 0.67
CLN3-216ENST00000565316 PUF60Q9UHX1 559 aaKnown RBP19.25■□□□□ 0.67
CLN3-216ENST00000565316 USP15Q9Y4E8 981 aaPredicted RBP19.25■□□□□ 0.67
CLN3-216ENST00000565316 SLC37A4O43826 429 aa19.24■□□□□ 0.67
CLN3-216ENST00000565316 HOXD11P31277 338 aaPredicted RBP19.24■□□□□ 0.67
CLN3-216ENST00000565316 DNM2P50570 870 aa19.24■□□□□ 0.67
CLN3-216ENST00000565316 SCRN1Q12765 414 aa19.24■□□□□ 0.67
CLN3-216ENST00000565316 PPP2R5CQ13362 524 aa19.24■□□□□ 0.67
CLN3-216ENST00000565316 ANO5Q75V66 913 aa19.24■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms