RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 SNX29Q8TEQ0 813 aa10.3□□□□□ -0.76
VPS35-206ENST00000565228 EPSTI1Q96J88 318 aa10.3□□□□□ -0.76
VPS35-206ENST00000565228 PBX4Q9BYU1 374 aa10.3□□□□□ -0.76
VPS35-206ENST00000565228 TTYH1Q9H313 450 aaPredicted RBP10.3□□□□□ -0.76
VPS35-206ENST00000565228 IFT122Q9HBG6 1241 aa10.3□□□□□ -0.76
VPS35-206ENST00000565228 ANKEF1Q9NU02 776 aa10.3□□□□□ -0.76
VPS35-206ENST00000565228 BLOC1S4Q9NUP1 217 aa10.3□□□□□ -0.76
VPS35-206ENST00000565228 DDX19AQ9NUU7 478 aaKnown RBP10.3□□□□□ -0.76
VPS35-206ENST00000565228 TCEAL9Q9UHQ7 104 aa10.3□□□□□ -0.76
VPS35-206ENST00000565228 PADI3Q9ULW8 664 aa10.3□□□□□ -0.76
VPS35-206ENST00000565228 KIAA1024Q9UPX6 916 aa10.3□□□□□ -0.76
VPS35-206ENST00000565228 A0A087WZ62 844 aa10.29□□□□□ -0.76
VPS35-206ENST00000565228 TTLL13PA6NNM8 815 aa10.29□□□□□ -0.76
VPS35-206ENST00000565228 LAD1O00515 517 aa10.29□□□□□ -0.76
VPS35-206ENST00000565228 ENPP3O14638 875 aa10.29□□□□□ -0.76
VPS35-206ENST00000565228 MAGEB2O15479 319 aa10.29□□□□□ -0.76
VPS35-206ENST00000565228 GLRA2P23416 452 aa10.29□□□□□ -0.76
VPS35-206ENST00000565228 GATMP50440 423 aa10.29□□□□□ -0.76
VPS35-206ENST00000565228 DSC3Q14574 896 aa10.29□□□□□ -0.76
VPS35-206ENST00000565228 SLC39A14Q15043 492 aa10.29□□□□□ -0.76
VPS35-206ENST00000565228 KARSQ15046 597 aaKnown RBP10.29□□□□□ -0.76
VPS35-206ENST00000565228 NAALADL2Q58DX5 795 aa10.29□□□□□ -0.76
VPS35-206ENST00000565228 AXDND1Q5T1B0 1012 aaPredicted RBP10.29□□□□□ -0.76
VPS35-206ENST00000565228 ARL6IP4Q66PJ3 421 aaKnown RBP10.29□□□□□ -0.76
VPS35-206ENST00000565228 MAEAQ7L5Y9 396 aa10.29□□□□□ -0.76
VPS35-206ENST00000565228 NME8Q8N427 588 aa10.29□□□□□ -0.76
VPS35-206ENST00000565228 CCDC155Q8N6L0 562 aa10.29□□□□□ -0.76
VPS35-206ENST00000565228 NEK9Q8TD19 979 aa10.29□□□□□ -0.76
VPS35-206ENST00000565228 PRPF31Q8WWY3 499 aaKnown RBP10.29□□□□□ -0.76
VPS35-206ENST00000565228 FDXACB1Q9BRP7 624 aaPredicted RBP10.29□□□□□ -0.76
VPS35-206ENST00000565228 RUSC1Q9BVN2 902 aa10.29□□□□□ -0.76
VPS35-206ENST00000565228 SUCLA2Q9P2R7 463 aaPredicted RBP10.29□□□□□ -0.76
VPS35-206ENST00000565228 DAXXQ9UER7 740 aaPredicted RBP10.29□□□□□ -0.76
VPS35-206ENST00000565228 ST3GAL5Q9UNP4 418 aa10.29□□□□□ -0.76
VPS35-206ENST00000565228 CEP131Q9UPN4 1083 aa10.29□□□□□ -0.76
VPS35-206ENST00000565228 GINS2Q9Y248 185 aa10.29□□□□□ -0.76
VPS35-206ENST00000565228 USP20Q9Y2K6 914 aa10.29□□□□□ -0.76
VPS35-206ENST00000565228 ADGRA3Q8IWK6 1321 aa10.29□□□□□ -0.76
VPS35-206ENST00000565228 KIAA1671Q9BY89 1806 aa10.28□□□□□ -0.76
VPS35-206ENST00000565228 REV3LO60673 3130 aa10.28□□□□□ -0.76
VPS35-206ENST00000565228 FNDC1Q4ZHG4 1894 aaPredicted RBP10.28□□□□□ -0.76
VPS35-206ENST00000565228 NPHP3-ACAD11A0A0J9YXS1 232 aa10.28□□□□□ -0.76
VPS35-206ENST00000565228 EPOPA6NHQ4 379 aa10.28□□□□□ -0.76
VPS35-206ENST00000565228 USO1O60763 962 aaKnown RBP10.28□□□□□ -0.76
VPS35-206ENST00000565228 PFKMP08237 780 aa10.28□□□□□ -0.76
VPS35-206ENST00000565228 LINC00271P0C7V0 271 aa10.28□□□□□ -0.76
VPS35-206ENST00000565228 CRYBB1P53674 252 aaPredicted RBP10.28□□□□□ -0.76
VPS35-206ENST00000565228 SLC12A3P55017 1021 aa10.28□□□□□ -0.76
VPS35-206ENST00000565228 CAPSQ13938 189 aa10.28□□□□□ -0.76
VPS35-206ENST00000565228 ARSHQ5FYA8 562 aa10.28□□□□□ -0.76
VPS35-206ENST00000565228 SHC4Q6S5L8 630 aa10.28□□□□□ -0.76
VPS35-206ENST00000565228 PADI6Q6TGC4 694 aa10.28□□□□□ -0.76
VPS35-206ENST00000565228 TSHZ1Q6ZSZ6 1077 aa10.28□□□□□ -0.76
VPS35-206ENST00000565228 RHPN2Q8IUC4 686 aa10.28□□□□□ -0.76
VPS35-206ENST00000565228 RPUSD2Q8IZ73 545 aaKnown RBP10.28□□□□□ -0.76
VPS35-206ENST00000565228 IFIH1Q9BYX4 1025 aaKnown RBP10.28□□□□□ -0.76
VPS35-206ENST00000565228 BHMT2Q9H2M3 363 aa10.28□□□□□ -0.76
VPS35-206ENST00000565228 ZSCAN16Q9H4T2 348 aaPredicted RBP10.28□□□□□ -0.76
VPS35-206ENST00000565228 RC3H2Q9HBD1 1191 aaKnown RBP10.28□□□□□ -0.76
VPS35-206ENST00000565228 RNF19AQ9NV58 838 aa10.28□□□□□ -0.76
VPS35-206ENST00000565228 DBR1Q9UK59 544 aaKnown RBP10.28□□□□□ -0.76
VPS35-206ENST00000565228 AKT3Q9Y243 479 aa10.28□□□□□ -0.76
VPS35-206ENST00000565228 SRPRBQ9Y5M8 271 aaKnown RBP10.28□□□□□ -0.76
VPS35-206ENST00000565228 MORC2Q9Y6X9 1032 aaPredicted RBP10.28□□□□□ -0.76
VPS35-206ENST00000565228 ATG2AQ2TAZ0 1938 aa10.28□□□□□ -0.76
VPS35-206ENST00000565228 MYH11P35749 1972 aa10.27□□□□□ -0.77
VPS35-206ENST00000565228 MEIS3P2A8K0S8 358 aa10.27□□□□□ -0.77
VPS35-206ENST00000565228 ZBBXA8MT70 800 aa10.27□□□□□ -0.77
VPS35-206ENST00000565228 XRCC6P12956 609 aaKnown RBP eCLIP10.27□□□□□ -0.77
VPS35-206ENST00000565228 DARSP14868 501 aaKnown RBP10.27□□□□□ -0.77
VPS35-206ENST00000565228 ATF7P17544 494 aaPredicted RBP10.27□□□□□ -0.77
VPS35-206ENST00000565228 LAMTOR4Q0VGL1 99 aa10.27□□□□□ -0.77
VPS35-206ENST00000565228 AMHR2Q16671 573 aa10.27□□□□□ -0.77
VPS35-206ENST00000565228 IER5Q5VY09 327 aa10.27□□□□□ -0.77
VPS35-206ENST00000565228 RINT1Q6NUQ1 792 aa10.27□□□□□ -0.77
VPS35-206ENST00000565228 FAM117BQ6P1L5 589 aa10.27□□□□□ -0.77
VPS35-206ENST00000565228 C1orf186Q6ZWK4 172 aa10.27□□□□□ -0.77
VPS35-206ENST00000565228 CABP7Q86V35 215 aa10.27□□□□□ -0.77
VPS35-206ENST00000565228 HERC6Q8IVU3 1022 aa10.27□□□□□ -0.77
VPS35-206ENST00000565228 SYMPKQ92797 1274 aaKnown RBP10.27□□□□□ -0.77
VPS35-206ENST00000565228 NACC1Q96RE7 527 aa10.27□□□□□ -0.77
VPS35-206ENST00000565228 MTRQ99707 1265 aa10.27□□□□□ -0.77
VPS35-206ENST00000565228 KIFC3Q9BVG8 833 aa10.27□□□□□ -0.77
VPS35-206ENST00000565228 NKX2-4Q9H2Z4 354 aa10.27□□□□□ -0.77
VPS35-206ENST00000565228 HCSTQ9UBK5 93 aa10.27□□□□□ -0.77
VPS35-206ENST00000565228 COL4A3BPQ9Y5P4 624 aa10.27□□□□□ -0.77
VPS35-206ENST00000565228 HSFX4A0A1B0GTS1 333 aaPredicted RBP10.26□□□□□ -0.77
VPS35-206ENST00000565228 ABHD14A-ACY1A0A1B0GW23 586 aa10.26□□□□□ -0.77
VPS35-206ENST00000565228 HSFX3A0A1B0GWH4 333 aaPredicted RBP10.26□□□□□ -0.77
VPS35-206ENST00000565228 B4GALT5O43286 388 aa10.26□□□□□ -0.77
VPS35-206ENST00000565228 DGAT1O75907 488 aa10.26□□□□□ -0.77
VPS35-206ENST00000565228 EYA4O95677 639 aa10.26□□□□□ -0.77
VPS35-206ENST00000565228 HSP90AA1P07900 732 aaKnown RBP10.26□□□□□ -0.77
VPS35-206ENST00000565228 SRGAP2CP0DJJ0 459 aa10.26□□□□□ -0.77
VPS35-206ENST00000565228 ATP2A2P16615 1042 aaKnown RBP10.26□□□□□ -0.77
VPS35-206ENST00000565228 CYP11B2P19099 503 aa10.26□□□□□ -0.77
VPS35-206ENST00000565228 PLCG1P19174 1290 aa10.26□□□□□ -0.77
VPS35-206ENST00000565228 EIF4BP23588 611 aaKnown RBP10.26□□□□□ -0.77
VPS35-206ENST00000565228 HOXA11P31270 313 aaPredicted RBP10.26□□□□□ -0.77
VPS35-206ENST00000565228 LONP1P36776 959 aaKnown RBP10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 72.2 ms