RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 MMTAG2Q9BU76 263 aaKnown RBP10.44□□□□□ -0.74
LDLR-211ENST00000560173 PBX4Q9BYU1 374 aa10.44□□□□□ -0.74
LDLR-211ENST00000560173 ZSCAN16Q9H4T2 348 aaPredicted RBP10.44□□□□□ -0.74
LDLR-211ENST00000560173 ERVK-5Q9HDB9 667 aa10.44□□□□□ -0.74
LDLR-211ENST00000560173 XPNPEP1Q9NQW7 623 aa10.44□□□□□ -0.74
LDLR-211ENST00000560173 BMP2KQ9NSY1 1161 aaPredicted RBP10.44□□□□□ -0.74
LDLR-211ENST00000560173 SUCLA2Q9P2R7 463 aaPredicted RBP10.44□□□□□ -0.74
LDLR-211ENST00000560173 DBR1Q9UK59 544 aaKnown RBP10.44□□□□□ -0.74
LDLR-211ENST00000560173 PADI3Q9ULW8 664 aa10.44□□□□□ -0.74
LDLR-211ENST00000560173 NOC2LQ9Y3T9 749 aaKnown RBP10.44□□□□□ -0.74
LDLR-211ENST00000560173 STK24Q9Y6E0 443 aa10.44□□□□□ -0.74
LDLR-211ENST00000560173 CHD7Q9P2D1 2997 aa10.44□□□□□ -0.74
LDLR-211ENST00000560173 PTPRSQ13332 1948 aa10.43□□□□□ -0.74
LDLR-211ENST00000560173 TTC28Q96AY4 2481 aa10.43□□□□□ -0.74
LDLR-211ENST00000560173 TMEM265A0A087WTH1 108 aa10.43□□□□□ -0.74
LDLR-211ENST00000560173 VWA3AA6NCI4 1184 aa10.43□□□□□ -0.74
LDLR-211ENST00000560173 RPS6KA5O75582 802 aa10.43□□□□□ -0.74
LDLR-211ENST00000560173 DGAT1O75907 488 aa10.43□□□□□ -0.74
LDLR-211ENST00000560173 AMHP03971 560 aa10.43□□□□□ -0.74
LDLR-211ENST00000560173 ZSCAN22P10073 491 aaPredicted RBP10.43□□□□□ -0.74
LDLR-211ENST00000560173 PDIA4P13667 645 aaKnown RBP10.43□□□□□ -0.74
LDLR-211ENST00000560173 DARSP14868 501 aaKnown RBP10.43□□□□□ -0.74
LDLR-211ENST00000560173 CDC25AP30304 524 aa10.43□□□□□ -0.74
LDLR-211ENST00000560173 RABGGTBP53611 331 aa10.43□□□□□ -0.74
LDLR-211ENST00000560173 PTPAQ15257 358 aa10.43□□□□□ -0.74
LDLR-211ENST00000560173 KRT79Q5XKE5 535 aa10.43□□□□□ -0.74
LDLR-211ENST00000560173 TMCO2Q7Z6W1 182 aaPredicted RBP10.43□□□□□ -0.74
LDLR-211ENST00000560173 FAM228AQ86W67 206 aa10.43□□□□□ -0.74
LDLR-211ENST00000560173 NLRP7Q8WX94 980 aa10.43□□□□□ -0.74
LDLR-211ENST00000560173 PSPC1Q8WXF1 523 aaKnown RBP10.43□□□□□ -0.74
LDLR-211ENST00000560173 MYLIPQ8WY64 445 aa10.43□□□□□ -0.74
LDLR-211ENST00000560173 TMEM143Q96AN5 459 aa10.43□□□□□ -0.74
LDLR-211ENST00000560173 TIFAQ96CG3 184 aa10.43□□□□□ -0.74
LDLR-211ENST00000560173 ZNF668Q96K58 619 aaPredicted RBP10.43□□□□□ -0.74
LDLR-211ENST00000560173 TMX1Q9H3N1 280 aa10.43□□□□□ -0.74
LDLR-211ENST00000560173 SEMA6BQ9H3T3 888 aa10.43□□□□□ -0.74
LDLR-211ENST00000560173 ATP6V0A4Q9HBG4 840 aa10.43□□□□□ -0.74
LDLR-211ENST00000560173 ST3GAL5Q9UNP4 418 aa10.43□□□□□ -0.74
LDLR-211ENST00000560173 KIAA1024Q9UPX6 916 aa10.43□□□□□ -0.74
LDLR-211ENST00000560173 YBX2Q9Y2T7 364 aaKnown RBP10.43□□□□□ -0.74
LDLR-211ENST00000560173 PCDHA11Q9Y5I1 949 aa10.43□□□□□ -0.74
LDLR-211ENST00000560173 COL4A3BPQ9Y5P4 624 aa10.43□□□□□ -0.74
LDLR-211ENST00000560173 CLIC4Q9Y696 253 aa10.43□□□□□ -0.74
LDLR-211ENST00000560173 TNFRSF10AO00220 468 aa10.42□□□□□ -0.74
LDLR-211ENST00000560173 USO1O60763 962 aaKnown RBP10.42□□□□□ -0.74
LDLR-211ENST00000560173 GJB5O95377 273 aa10.42□□□□□ -0.74
LDLR-211ENST00000560173 EIF4BP23588 611 aaKnown RBP10.42□□□□□ -0.74
LDLR-211ENST00000560173 PLA2G5P39877 138 aa10.42□□□□□ -0.74
LDLR-211ENST00000560173 CDC42EP1Q00587 391 aa10.42□□□□□ -0.74
LDLR-211ENST00000560173 GRIN1Q05586 938 aa10.42□□□□□ -0.74
LDLR-211ENST00000560173 LAMTOR4Q0VGL1 99 aa10.42□□□□□ -0.74
LDLR-211ENST00000560173 PKP1Q13835 747 aa10.42□□□□□ -0.74
LDLR-211ENST00000560173 HYIQ5T013 277 aa10.42□□□□□ -0.74
LDLR-211ENST00000560173 FAM43BQ6ZT52 329 aaPredicted RBP10.42□□□□□ -0.74
LDLR-211ENST00000560173 ZNF410Q86VK4 478 aa10.42□□□□□ -0.74
LDLR-211ENST00000560173 RHPN2Q8IUC4 686 aa10.42□□□□□ -0.74
LDLR-211ENST00000560173 KSR1Q8IVT5 923 aa10.42□□□□□ -0.74
LDLR-211ENST00000560173 MYOCDQ8IZQ8 938 aa10.42□□□□□ -0.74
LDLR-211ENST00000560173 TCP11Q8WWU5 503 aa10.42□□□□□ -0.74
LDLR-211ENST00000560173 PRPF31Q8WWY3 499 aaKnown RBP10.42□□□□□ -0.74
LDLR-211ENST00000560173 AK8Q96MA6 479 aa10.42□□□□□ -0.74
LDLR-211ENST00000560173 SCLT1Q96NL6 688 aa10.42□□□□□ -0.74
LDLR-211ENST00000560173 USP28Q96RU2 1077 aa10.42□□□□□ -0.74
LDLR-211ENST00000560173 MTRQ99707 1265 aa10.42□□□□□ -0.74
LDLR-211ENST00000560173 FTHL17Q9BXU8 183 aa10.42□□□□□ -0.74
LDLR-211ENST00000560173 TSPYL2Q9H2G4 693 aaPredicted RBP10.42□□□□□ -0.74
LDLR-211ENST00000560173 NKX2-4Q9H2Z4 354 aa10.42□□□□□ -0.74
LDLR-211ENST00000560173 TTYH1Q9H313 450 aaPredicted RBP10.42□□□□□ -0.74
LDLR-211ENST00000560173 DDX19AQ9NUU7 478 aaKnown RBP10.42□□□□□ -0.74
LDLR-211ENST00000560173 MSRAQ9UJ68 235 aa10.42□□□□□ -0.74
LDLR-211ENST00000560173 MORC2Q9Y6X9 1032 aaPredicted RBP10.42□□□□□ -0.74
LDLR-211ENST00000560173 LOXHD1Q8IVV2 1947 aa10.42□□□□□ -0.74
LDLR-211ENST00000560173 GBF1Q92538 1859 aa10.41□□□□□ -0.74
LDLR-211ENST00000560173 A0A087WZ62 844 aa10.41□□□□□ -0.74
LDLR-211ENST00000560173 ARHGEF35A5YM69 484 aa10.41□□□□□ -0.74
LDLR-211ENST00000560173 ENPP3O14638 875 aa10.41□□□□□ -0.74
LDLR-211ENST00000560173 GPR182O15218 404 aa10.41□□□□□ -0.74
LDLR-211ENST00000560173 SLC26A4O43511 780 aa10.41□□□□□ -0.74
LDLR-211ENST00000560173 MGEA5O60502 916 aa10.41□□□□□ -0.74
LDLR-211ENST00000560173 EYA4O95677 639 aa10.41□□□□□ -0.74
LDLR-211ENST00000560173 F13A1P00488 732 aa10.41□□□□□ -0.74
LDLR-211ENST00000560173 MYOGP15173 224 aa10.41□□□□□ -0.74
LDLR-211ENST00000560173 ARL2P36404 184 aa10.41□□□□□ -0.74
LDLR-211ENST00000560173 LONP1P36776 959 aaKnown RBP10.41□□□□□ -0.74
LDLR-211ENST00000560173 NASPP49321 788 aaPredicted RBP10.41□□□□□ -0.74
LDLR-211ENST00000560173 NFX1Q12986 1120 aaKnown RBP10.41□□□□□ -0.74
LDLR-211ENST00000560173 GRB10Q13322 594 aa10.41□□□□□ -0.74
LDLR-211ENST00000560173 DSC3Q14574 896 aa10.41□□□□□ -0.74
LDLR-211ENST00000560173 TMEM119Q4V9L6 283 aa10.41□□□□□ -0.74
LDLR-211ENST00000560173 ODR4Q5SWX8 454 aa10.41□□□□□ -0.74
LDLR-211ENST00000560173 FOXD4L5Q5VV16 416 aaPredicted RBP10.41□□□□□ -0.74
LDLR-211ENST00000560173 FAM117BQ6P1L5 589 aa10.41□□□□□ -0.74
LDLR-211ENST00000560173 PADI6Q6TGC4 694 aa10.41□□□□□ -0.74
LDLR-211ENST00000560173 KCNK18Q7Z418 384 aa10.41□□□□□ -0.74
LDLR-211ENST00000560173 RTN4RL1Q86UN2 441 aaPredicted RBP10.41□□□□□ -0.74
LDLR-211ENST00000560173 MCPH1Q8NEM0 835 aa10.41□□□□□ -0.74
LDLR-211ENST00000560173 ASAP3Q8TDY4 903 aa10.41□□□□□ -0.74
LDLR-211ENST00000560173 FOXD4L4Q8WXT5 416 aaPredicted RBP10.41□□□□□ -0.74
LDLR-211ENST00000560173 TOP1MTQ969P6 601 aa10.41□□□□□ -0.74
LDLR-211ENST00000560173 NLRP4Q96MN2 994 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms