RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 RASGRP4Q8TDF6 673 aa6□□□□□ -1.45
LIMA1-203ENST00000547825 ZNF296Q8WUU4 475 aaPredicted RBP6□□□□□ -1.45
LIMA1-203ENST00000547825 CEP63Q96MT8 703 aa6□□□□□ -1.45
LIMA1-203ENST00000547825 HHIPQ96QV1 700 aa6□□□□□ -1.45
LIMA1-203ENST00000547825 DSCC1Q9BVC3 393 aa6□□□□□ -1.45
LIMA1-203ENST00000547825 HAUS4Q9H6D7 363 aa6□□□□□ -1.45
LIMA1-203ENST00000547825 PIM2Q9P1W9 311 aa6□□□□□ -1.45
LIMA1-203ENST00000547825 SALL4Q9UJQ4 1053 aa6□□□□□ -1.45
LIMA1-203ENST00000547825 CEP83Q9Y592 693 aa6□□□□□ -1.45
LIMA1-203ENST00000547825 COL1A1P02452 1464 aaPredicted RBP5.99□□□□□ -1.45
LIMA1-203ENST00000547825 GRIN3BO60391 1043 aa5.99□□□□□ -1.45
LIMA1-203ENST00000547825 TXKP42681 527 aa5.99□□□□□ -1.45
LIMA1-203ENST00000547825 PLCD1P51178 756 aa5.99□□□□□ -1.45
LIMA1-203ENST00000547825 TUBB2AQ13885 445 aa5.99□□□□□ -1.45
LIMA1-203ENST00000547825 IER5Q5VY09 327 aa5.99□□□□□ -1.45
LIMA1-203ENST00000547825 TPTE2Q6XPS3 522 aa5.99□□□□□ -1.45
LIMA1-203ENST00000547825 DZIP1Q86YF9 867 aaKnown RBP5.99□□□□□ -1.45
LIMA1-203ENST00000547825 REXO1L1PQ8IX06 675 aa5.99□□□□□ -1.45
LIMA1-203ENST00000547825 CACNA2D3Q8IZS8 1091 aa5.99□□□□□ -1.45
LIMA1-203ENST00000547825 TMTC2Q8N394 836 aa5.99□□□□□ -1.45
LIMA1-203ENST00000547825 VGLL2Q8N8G2 317 aa5.99□□□□□ -1.45
LIMA1-203ENST00000547825 NOX5Q96PH1 765 aa5.99□□□□□ -1.45
LIMA1-203ENST00000547825 TUBB2BQ9BVA1 445 aa5.99□□□□□ -1.45
LIMA1-203ENST00000547825 NYXQ9GZU5 481 aa5.99□□□□□ -1.45
LIMA1-203ENST00000547825 PGAP2Q9UHJ9 254 aa5.99□□□□□ -1.45
LIMA1-203ENST00000547825 MRFAP1Q9Y605 127 aa5.99□□□□□ -1.45
LIMA1-203ENST00000547825 A0A0G2JMZ2 1700 aa5.99□□□□□ -1.45
LIMA1-203ENST00000547825 ZNF185O15231 689 aa5.99□□□□□ -1.45
LIMA1-203ENST00000547825 KIF5BP33176 963 aa5.99□□□□□ -1.45
LIMA1-203ENST00000547825 EIF4A3P38919 411 aaKnown RBP5.99□□□□□ -1.45
LIMA1-203ENST00000547825 NAPAP54920 295 aa5.99□□□□□ -1.45
LIMA1-203ENST00000547825 SESN3P58005 492 aa5.99□□□□□ -1.45
LIMA1-203ENST00000547825 ZBTB16Q05516 673 aa5.99□□□□□ -1.45
LIMA1-203ENST00000547825 PLS1Q14651 629 aa5.99□□□□□ -1.45
LIMA1-203ENST00000547825 TMEM266Q2M3C6 531 aa5.99□□□□□ -1.45
LIMA1-203ENST00000547825 CFAP221Q4G0U5 840 aa5.99□□□□□ -1.45
LIMA1-203ENST00000547825 CAVIN4Q5BKX8 364 aa5.99□□□□□ -1.45
LIMA1-203ENST00000547825 AKNAD1Q5T1N1 836 aa5.99□□□□□ -1.45
LIMA1-203ENST00000547825 C6orf118Q5T5N4 469 aa5.99□□□□□ -1.45
LIMA1-203ENST00000547825 APOA5Q6Q788 366 aa5.99□□□□□ -1.45
LIMA1-203ENST00000547825 EP400NLQ6ZTU2 488 aa5.99□□□□□ -1.45
LIMA1-203ENST00000547825 ANKS3Q6ZW76 656 aa5.99□□□□□ -1.45
LIMA1-203ENST00000547825 HAUS7Q99871 368 aa5.99□□□□□ -1.45
LIMA1-203ENST00000547825 CNNM2Q9H8M5 875 aa5.99□□□□□ -1.45
LIMA1-203ENST00000547825 KCND1Q9NSA2 647 aa5.99□□□□□ -1.45
LIMA1-203ENST00000547825 NFU1Q9UMS0 254 aa5.99□□□□□ -1.45
LIMA1-203ENST00000547825 MAST3O60307 1309 aa5.99□□□□□ -1.45
LIMA1-203ENST00000547825 BAZ2AQ9UIF9 1905 aaKnown RBP5.99□□□□□ -1.45
LIMA1-203ENST00000547825 A0A1W2PP55 124 aa5.99□□□□□ -1.45
LIMA1-203ENST00000547825 SNAP23O00161 211 aa5.99□□□□□ -1.45
LIMA1-203ENST00000547825 MOCS3O95396 460 aa5.99□□□□□ -1.45
LIMA1-203ENST00000547825 FTCDO95954 541 aa5.99□□□□□ -1.45
LIMA1-203ENST00000547825 RNF144AP50876 292 aaPredicted RBP5.99□□□□□ -1.45
LIMA1-203ENST00000547825 FAM133BQ5BKY9 247 aaKnown RBP5.99□□□□□ -1.45
LIMA1-203ENST00000547825 FAM47AQ5JRC9 791 aa5.99□□□□□ -1.45
LIMA1-203ENST00000547825 ANAPC16Q96DE5 110 aa5.99□□□□□ -1.45
LIMA1-203ENST00000547825 NCAPGQ9BPX3 1015 aa5.99□□□□□ -1.45
LIMA1-203ENST00000547825 FUT8Q9BYC5 575 aa5.99□□□□□ -1.45
LIMA1-203ENST00000547825 PUS7LQ9H0K6 701 aaKnown RBP5.99□□□□□ -1.45
LIMA1-203ENST00000547825 TMX4Q9H1E5 349 aaPredicted RBP5.99□□□□□ -1.45
LIMA1-203ENST00000547825 RUBCNLQ9H714 662 aa5.99□□□□□ -1.45
LIMA1-203ENST00000547825 SMARCAL1Q9NZC9 954 aa5.99□□□□□ -1.45
LIMA1-203ENST00000547825 LRWD1Q9UFC0 647 aa5.99□□□□□ -1.45
LIMA1-203ENST00000547825 PPT2Q9UMR5 302 aa5.99□□□□□ -1.45
LIMA1-203ENST00000547825 ZNF652Q9Y2D9 606 aa5.99□□□□□ -1.45
LIMA1-203ENST00000547825 TULP2O00295 520 aa5.98□□□□□ -1.45
LIMA1-203ENST00000547825 ADAMTS3O15072 1205 aa5.98□□□□□ -1.45
LIMA1-203ENST00000547825 HEXIM1O94992 359 aaKnown RBP5.98□□□□□ -1.45
LIMA1-203ENST00000547825 NDUFA10O95299 355 aa5.98□□□□□ -1.45
LIMA1-203ENST00000547825 BMP15O95972 392 aa5.98□□□□□ -1.45
LIMA1-203ENST00000547825 VPS41P49754 854 aa5.98□□□□□ -1.45
LIMA1-203ENST00000547825 USP49Q70CQ1 688 aa5.98□□□□□ -1.45
LIMA1-203ENST00000547825 FCHSD1Q86WN1 690 aa5.98□□□□□ -1.45
LIMA1-203ENST00000547825 VSIG1Q86XK7 387 aa5.98□□□□□ -1.45
LIMA1-203ENST00000547825 SMCR8Q8TEV9 937 aaPredicted RBP5.98□□□□□ -1.45
LIMA1-203ENST00000547825 SDR42E1Q8WUS8 393 aa5.98□□□□□ -1.45
LIMA1-203ENST00000547825 SRPK1Q96SB4 655 aaKnown RBP5.98□□□□□ -1.45
LIMA1-203ENST00000547825 PNKPQ96T60 521 aa5.98□□□□□ -1.45
LIMA1-203ENST00000547825 CHP1Q99653 195 aa5.98□□□□□ -1.45
LIMA1-203ENST00000547825 LBHD1Q9BQE6 289 aaPredicted RBP5.98□□□□□ -1.45
LIMA1-203ENST00000547825 EHD4Q9H223 541 aa5.98□□□□□ -1.45
LIMA1-203ENST00000547825 SUV39H2Q9H5I1 410 aa5.98□□□□□ -1.45
LIMA1-203ENST00000547825 SLC39A2Q9NP94 309 aa5.98□□□□□ -1.45
LIMA1-203ENST00000547825 ZDHHC3Q9NYG2 299 aa5.98□□□□□ -1.45
LIMA1-203ENST00000547825 ATP6V0A2Q9Y487 856 aa5.98□□□□□ -1.45
LIMA1-203ENST00000547825 DOCK1Q14185 1865 aa5.98□□□□□ -1.45
LIMA1-203ENST00000547825 ABCB4P21439 1286 aa5.98□□□□□ -1.45
LIMA1-203ENST00000547825 SLCO1A2P46721 670 aa5.98□□□□□ -1.45
LIMA1-203ENST00000547825 GUCY1A3Q02108 690 aa5.98□□□□□ -1.45
LIMA1-203ENST00000547825 ZRSR2Q15696 482 aaKnown RBP5.98□□□□□ -1.45
LIMA1-203ENST00000547825 ZKSCAN8Q15776 578 aaPredicted RBP5.98□□□□□ -1.45
LIMA1-203ENST00000547825 LINC00528Q8N1L1 170 aa5.98□□□□□ -1.45
LIMA1-203ENST00000547825 FAM169BQ8N8A8 192 aa5.98□□□□□ -1.45
LIMA1-203ENST00000547825 CNBD1Q8NA66 436 aa5.98□□□□□ -1.45
LIMA1-203ENST00000547825 RNF217Q8TC41 542 aa5.98□□□□□ -1.45
LIMA1-203ENST00000547825 PLD4Q96BZ4 506 aa5.98□□□□□ -1.45
LIMA1-203ENST00000547825 TMEM87BQ96K49 555 aa5.98□□□□□ -1.45
LIMA1-203ENST00000547825 RAB34Q9BZG1 259 aa5.98□□□□□ -1.45
LIMA1-203ENST00000547825 TAOK3Q9H2K8 898 aa5.98□□□□□ -1.45
LIMA1-203ENST00000547825 CXorf56Q9H5V9 222 aa5.98□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 122.4 ms