RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 FAM187AA6NFU0 413 aa13.87□□□□□ -0.19
SFSWAP-209ENST00000540469 BTNL10A8MVZ5 291 aa13.87□□□□□ -0.19
SFSWAP-209ENST00000540469 SETDB1Q15047 1291 aa13.87□□□□□ -0.19
SFSWAP-209ENST00000540469 COA7Q96BR5 231 aa13.87□□□□□ -0.19
SFSWAP-209ENST00000540469 PPP1R9AQ9ULJ8 1098 aa13.87□□□□□ -0.19
SFSWAP-209ENST00000540469 PCDHB13Q9Y5F0 798 aa13.87□□□□□ -0.19
SFSWAP-209ENST00000540469 BLMHQ13867 455 aa13.87□□□□□ -0.19
SFSWAP-209ENST00000540469 CDCA2Q69YH5 1023 aaPredicted RBP13.87□□□□□ -0.19
SFSWAP-209ENST00000540469 FAM47EQ6ZV65 393 aa13.87□□□□□ -0.19
SFSWAP-209ENST00000540469 RASGEF1CQ8N431 466 aa13.87□□□□□ -0.19
SFSWAP-209ENST00000540469 LZTS2Q9BRK4 669 aa13.87□□□□□ -0.19
SFSWAP-209ENST00000540469 ARHGEF10LQ9HCE6 1279 aa13.87□□□□□ -0.19
SFSWAP-209ENST00000540469 ERVK-5Q9HDB9 667 aa13.87□□□□□ -0.19
SFSWAP-209ENST00000540469 DNAJC17Q9NVM6 304 aaKnown RBP13.87□□□□□ -0.19
SFSWAP-209ENST00000540469 ETAA1Q9NY74 926 aa13.87□□□□□ -0.19
SFSWAP-209ENST00000540469 PARP2Q9UGN5 583 aa13.87□□□□□ -0.19
SFSWAP-209ENST00000540469 CYP19A1P11511 503 aaPredicted RBP13.86□□□□□ -0.19
SFSWAP-209ENST00000540469 ADCY7P51828 1080 aa13.86□□□□□ -0.19
SFSWAP-209ENST00000540469 MAPK7Q13164 816 aa13.86□□□□□ -0.19
SFSWAP-209ENST00000540469 SLC35G1Q2M3R5 365 aa13.86□□□□□ -0.19
SFSWAP-209ENST00000540469 C11orf91Q3C1V1 193 aa13.86□□□□□ -0.19
SFSWAP-209ENST00000540469 DUPD1Q68J44 220 aa13.86□□□□□ -0.19
SFSWAP-209ENST00000540469 ADAM7Q9H2U9 754 aa13.86□□□□□ -0.19
SFSWAP-209ENST00000540469 NKIRAS1Q9NYS0 192 aa13.86□□□□□ -0.19
SFSWAP-209ENST00000540469 ADAM22Q9P0K1 906 aa13.86□□□□□ -0.19
SFSWAP-209ENST00000540469 TBK1Q9UHD2 729 aa13.86□□□□□ -0.19
SFSWAP-209ENST00000540469 SESN3P58005 492 aa13.86□□□□□ -0.19
SFSWAP-209ENST00000540469 DHX34Q14147 1143 aaKnown RBP13.86□□□□□ -0.19
SFSWAP-209ENST00000540469 TGS1Q96RS0 853 aaKnown RBP13.86□□□□□ -0.19
SFSWAP-209ENST00000540469 PPP1R12CQ9BZL4 782 aa13.86□□□□□ -0.19
SFSWAP-209ENST00000540469 PCDHA12Q9UN75 941 aa13.86□□□□□ -0.19
SFSWAP-209ENST00000540469 NKX1-1Q15270 411 aaPredicted RBP13.86□□□□□ -0.19
SFSWAP-209ENST00000540469 ZCWPW2Q504Y3 356 aa13.86□□□□□ -0.19
SFSWAP-209ENST00000540469 ZNF34Q8IZ26 560 aa13.86□□□□□ -0.19
SFSWAP-209ENST00000540469 DDX23Q9BUQ8 820 aaKnown RBP13.86□□□□□ -0.19
SFSWAP-209ENST00000540469 CTTNBP2NLQ9P2B4 639 aa13.86□□□□□ -0.19
SFSWAP-209ENST00000540469 TOM1O60784 492 aa13.85□□□□□ -0.19
SFSWAP-209ENST00000540469 GNAT1P11488 350 aa13.85□□□□□ -0.19
SFSWAP-209ENST00000540469 TNFAIP3P21580 790 aa13.85□□□□□ -0.19
SFSWAP-209ENST00000540469 PON1P27169 355 aa13.85□□□□□ -0.19
SFSWAP-209ENST00000540469 CCDC6Q16204 474 aa13.85□□□□□ -0.19
SFSWAP-209ENST00000540469 TSNAXIP1Q2TAA8 658 aa13.85□□□□□ -0.19
SFSWAP-209ENST00000540469 GRIPAP1Q4V328 841 aa13.85□□□□□ -0.19
SFSWAP-209ENST00000540469 AADACL2Q6P093 401 aa13.85□□□□□ -0.19
SFSWAP-209ENST00000540469 ZNF384Q8TF68 577 aa13.85□□□□□ -0.19
SFSWAP-209ENST00000540469 HES6Q96HZ4 224 aa13.85□□□□□ -0.19
SFSWAP-209ENST00000540469 C8orf37Q96NL8 207 aa13.85□□□□□ -0.19
SFSWAP-209ENST00000540469 GLI3P10071 1580 aa13.85□□□□□ -0.19
SFSWAP-209ENST00000540469 FRMPD2Q68DX3 1309 aaPredicted RBP13.85□□□□□ -0.19
SFSWAP-209ENST00000540469 ERVV-1B6SEH8 477 aa13.85□□□□□ -0.19
SFSWAP-209ENST00000540469 DDX3XO00571 662 aaKnown RBP eCLIP13.85□□□□□ -0.194e-7■□□□□ 8.8
SFSWAP-209ENST00000540469 PLA2G4BP0C869 781 aa13.85□□□□□ -0.19
SFSWAP-209ENST00000540469 FERP16591 822 aa13.85□□□□□ -0.19
SFSWAP-209ENST00000540469 ATP4AP20648 1035 aa13.85□□□□□ -0.19
SFSWAP-209ENST00000540469 ATP5DP30049 168 aa13.85□□□□□ -0.19
SFSWAP-209ENST00000540469 FXR2P51116 673 aaKnown RBP eCLIP13.85□□□□□ -0.19
SFSWAP-209ENST00000540469 MUM1Q2TAK8 710 aa13.85□□□□□ -0.19
SFSWAP-209ENST00000540469 SEL1L2Q5TEA6 688 aa13.85□□□□□ -0.19
SFSWAP-209ENST00000540469 RFFLQ8WZ73 363 aa13.85□□□□□ -0.19
SFSWAP-209ENST00000540469 RUNDC3BQ96NL0 473 aa13.85□□□□□ -0.19
SFSWAP-209ENST00000540469 KIAA0391O15091 583 aaKnown RBP13.85□□□□□ -0.19
SFSWAP-209ENST00000540469 RAD21O60216 631 aa13.85□□□□□ -0.19
SFSWAP-209ENST00000540469 RPL21P46778 160 aaKnown RBP13.85□□□□□ -0.19
SFSWAP-209ENST00000540469 KLRC3Q07444 240 aa13.85□□□□□ -0.19
SFSWAP-209ENST00000540469 BNIP1Q12981 228 aa13.85□□□□□ -0.19
SFSWAP-209ENST00000540469 AUHQ13825 339 aaKnown RBP13.85□□□□□ -0.19
SFSWAP-209ENST00000540469 UBE4AQ14139 1066 aa13.85□□□□□ -0.19
SFSWAP-209ENST00000540469 SPDYCQ5MJ68 293 aa13.85□□□□□ -0.19
SFSWAP-209ENST00000540469 UBAP2Q5T6F2 1119 aaKnown RBP13.85□□□□□ -0.19
SFSWAP-209ENST00000540469 ZNF449Q6P9G9 518 aa13.85□□□□□ -0.19
SFSWAP-209ENST00000540469 FITM2Q8N6M3 262 aa13.85□□□□□ -0.19
SFSWAP-209ENST00000540469 UBL4BQ8N7F7 174 aa13.85□□□□□ -0.19
SFSWAP-209ENST00000540469 RBM46Q8TBY0 533 aaKnown RBP13.85□□□□□ -0.19
SFSWAP-209ENST00000540469 SCFD1Q8WVM8 642 aa13.85□□□□□ -0.19
SFSWAP-209ENST00000540469 CNKSR1Q969H4 720 aa13.85□□□□□ -0.19
SFSWAP-209ENST00000540469 FAM84BQ96KN1 310 aaPredicted RBP13.85□□□□□ -0.19
SFSWAP-209ENST00000540469 PAPOLBQ9NRJ5 636 aaKnown RBP13.85□□□□□ -0.19
SFSWAP-209ENST00000540469 ZDHHC18Q9NUE0 388 aa13.85□□□□□ -0.19
SFSWAP-209ENST00000540469 DDX25Q9UHL0 483 aaKnown RBP13.85□□□□□ -0.19
SFSWAP-209ENST00000540469 RTCBQ9Y3I0 505 aaKnown RBP13.85□□□□□ -0.19
SFSWAP-209ENST00000540469 CLIC2O15247 247 aa13.84□□□□□ -0.19
SFSWAP-209ENST00000540469 BRAFP15056 766 aa13.84□□□□□ -0.19
SFSWAP-209ENST00000540469 ARHGAP44Q17R89 818 aa13.84□□□□□ -0.19
SFSWAP-209ENST00000540469 NBPF20Q3BBV1 942 aa13.84□□□□□ -0.19
SFSWAP-209ENST00000540469 CCDC137Q6PK04 289 aaKnown RBP13.84□□□□□ -0.19
SFSWAP-209ENST00000540469 MARCH10Q8NA82 808 aaPredicted RBP13.84□□□□□ -0.19
SFSWAP-209ENST00000540469 DNAJC19Q96DA6 116 aa13.84□□□□□ -0.19
SFSWAP-209ENST00000540469 NT5C3AQ9H0P0 336 aa13.84□□□□□ -0.19
SFSWAP-209ENST00000540469 CARD9Q9H257 536 aa13.84□□□□□ -0.19
SFSWAP-209ENST00000540469 RXFP1Q9HBX9 757 aa13.84□□□□□ -0.19
SFSWAP-209ENST00000540469 TXLNGQ9NUQ3 528 aa13.84□□□□□ -0.19
SFSWAP-209ENST00000540469 A0A1W2PRG0 241 aa13.84□□□□□ -0.19
SFSWAP-209ENST00000540469 POTEB3A0JP26 581 aa13.84□□□□□ -0.19
SFSWAP-209ENST00000540469 PALM3A6NDB9 673 aaPredicted RBP13.84□□□□□ -0.19
SFSWAP-209ENST00000540469 POTECB2RU33 542 aa13.84□□□□□ -0.19
SFSWAP-209ENST00000540469 UBE2SQ16763 222 aa13.84□□□□□ -0.19
SFSWAP-209ENST00000540469 POTEBQ6S5H4 581 aa13.84□□□□□ -0.19
SFSWAP-209ENST00000540469 EXOC3L1Q86VI1 746 aa13.84□□□□□ -0.19
SFSWAP-209ENST00000540469 TGFBRAP1Q8WUH2 860 aa13.84□□□□□ -0.19
SFSWAP-209ENST00000540469 GSTTP1A0A1W2PQM5 241 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms