RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 Q9UFV3 132 aa5.6□□□□□ -1.51
VPS29-202ENST00000447578 WDR33Q9C0J8 1336 aaKnown RBP5.59□□□□□ -1.51
VPS29-202ENST00000447578 PRAMEF22A3QJZ6 481 aa5.59□□□□□ -1.51
VPS29-202ENST00000447578 PARNO95453 639 aaKnown RBP5.59□□□□□ -1.51
VPS29-202ENST00000447578 S100BP04271 92 aaPredicted RBP5.59□□□□□ -1.51
VPS29-202ENST00000447578 VIL1P09327 827 aaKnown RBP5.59□□□□□ -1.51
VPS29-202ENST00000447578 MYCLP1P12525 358 aaPredicted RBP5.59□□□□□ -1.51
VPS29-202ENST00000447578 MEOX1P50221 254 aa5.59□□□□□ -1.51
VPS29-202ENST00000447578 GABREP78334 506 aa5.59□□□□□ -1.51
VPS29-202ENST00000447578 HGFACQ04756 655 aa5.59□□□□□ -1.51
VPS29-202ENST00000447578 DPTQ07507 201 aa5.59□□□□□ -1.51
VPS29-202ENST00000447578 GRM7Q14831 915 aa5.59□□□□□ -1.51
VPS29-202ENST00000447578 ACAP1Q15027 740 aa5.59□□□□□ -1.51
VPS29-202ENST00000447578 FAM47CQ5HY64 1035 aa5.59□□□□□ -1.51
VPS29-202ENST00000447578 TMEM200BQ69YZ2 307 aa5.59□□□□□ -1.51
VPS29-202ENST00000447578 WDR48Q8TAF3 677 aa5.59□□□□□ -1.51
VPS29-202ENST00000447578 ASB15Q8WXK1 588 aa5.59□□□□□ -1.51
VPS29-202ENST00000447578 NINJ1Q92982 152 aa5.59□□□□□ -1.51
VPS29-202ENST00000447578 MMRN2Q9H8L6 949 aa5.59□□□□□ -1.51
VPS29-202ENST00000447578 G3BP2Q9UN86 482 aaKnown RBP5.59□□□□□ -1.51
VPS29-202ENST00000447578 COQ6Q9Y2Z9 468 aa5.59□□□□□ -1.51
VPS29-202ENST00000447578 ARID4BQ4LE39 1312 aaPredicted RBP5.58□□□□□ -1.52
VPS29-202ENST00000447578 RASSF10A6NK89 507 aa5.58□□□□□ -1.52
VPS29-202ENST00000447578 GSTA4O15217 222 aa5.58□□□□□ -1.52
VPS29-202ENST00000447578 PDGFRBP09619 1106 aa5.58□□□□□ -1.52
VPS29-202ENST00000447578 STAT3P40763 770 aa5.58□□□□□ -1.52
VPS29-202ENST00000447578 TUBA3CQ13748 450 aa5.58□□□□□ -1.52
VPS29-202ENST00000447578 CCDC181Q5TID7 509 aa5.58□□□□□ -1.52
VPS29-202ENST00000447578 SPTY2D1Q68D10 685 aaPredicted RBP5.58□□□□□ -1.52
VPS29-202ENST00000447578 GRAMD4Q6IC98 578 aa5.58□□□□□ -1.52
VPS29-202ENST00000447578 TUBA3EQ6PEY2 450 aa5.58□□□□□ -1.52
VPS29-202ENST00000447578 ZNF575Q86XF7 245 aa5.58□□□□□ -1.52
VPS29-202ENST00000447578 NOSTRINQ8IVI9 506 aa5.58□□□□□ -1.52
VPS29-202ENST00000447578 NIM1KQ8IY84 436 aa5.58□□□□□ -1.52
VPS29-202ENST00000447578 D2HGDHQ8N465 521 aa5.58□□□□□ -1.52
VPS29-202ENST00000447578 MFSD3Q96ES6 412 aa5.58□□□□□ -1.52
VPS29-202ENST00000447578 GBP4Q96PP9 640 aa5.58□□□□□ -1.52
VPS29-202ENST00000447578 DHRS4Q9BTZ2 278 aa5.58□□□□□ -1.52
VPS29-202ENST00000447578 PCGF6Q9BYE7 350 aa5.58□□□□□ -1.52
VPS29-202ENST00000447578 CHPF2Q9P2E5 772 aa5.58□□□□□ -1.52
VPS29-202ENST00000447578 NAT1P18440 290 aa5.57□□□□□ -1.52
VPS29-202ENST00000447578 SMN1Q16637 294 aaKnown RBP5.57□□□□□ -1.52
VPS29-202ENST00000447578 AMER2Q8N7J2 671 aa5.57□□□□□ -1.52
VPS29-202ENST00000447578 HIPK4Q8NE63 616 aa5.57□□□□□ -1.52
VPS29-202ENST00000447578 SHCBP1Q8NEM2 672 aa5.57□□□□□ -1.52
VPS29-202ENST00000447578 CHAC2Q8WUX2 184 aa5.57□□□□□ -1.52
VPS29-202ENST00000447578 LARP4BQ92615 738 aaKnown RBP5.57□□□□□ -1.52
VPS29-202ENST00000447578 NELFAQ9H3P2 528 aa5.57□□□□□ -1.52
VPS29-202ENST00000447578 SLC52A2Q9HAB3 445 aa5.57□□□□□ -1.52
VPS29-202ENST00000447578 HOMER2Q9NSB8 354 aa5.57□□□□□ -1.52
VPS29-202ENST00000447578 TYW1Q9NV66 732 aaKnown RBP5.57□□□□□ -1.52
VPS29-202ENST00000447578 CEP72Q9P209 647 aa5.57□□□□□ -1.52
VPS29-202ENST00000447578 ATP8A1Q9Y2Q0 1164 aa5.57□□□□□ -1.52
VPS29-202ENST00000447578 MRPS23Q9Y3D9 190 aaKnown RBP5.57□□□□□ -1.52
VPS29-202ENST00000447578 WIZO95785 1651 aa5.56□□□□□ -1.52
VPS29-202ENST00000447578 LOC101059915A0A1B0GWI6 518 aaPredicted RBP5.56□□□□□ -1.52
VPS29-202ENST00000447578 CAPN14A8MX76 684 aa5.56□□□□□ -1.52
VPS29-202ENST00000447578 FOXP2O15409 715 aa5.56□□□□□ -1.52
VPS29-202ENST00000447578 SLC26A4O43511 780 aa5.56□□□□□ -1.52
VPS29-202ENST00000447578 RFPL3O75679 317 aa5.56□□□□□ -1.52
VPS29-202ENST00000447578 RASGRP1O95267 797 aa5.56□□□□□ -1.52
VPS29-202ENST00000447578 EVA1CP58658 441 aa5.56□□□□□ -1.52
VPS29-202ENST00000447578 PABPC4Q13310 644 aaKnown RBP eCLIP5.56□□□□□ -1.526e-6■■■■■ 28.1
VPS29-202ENST00000447578 ADAM15Q13444 863 aa5.56□□□□□ -1.52
VPS29-202ENST00000447578 CT47A1Q5JQC4 288 aaPredicted RBP5.56□□□□□ -1.52
VPS29-202ENST00000447578 FAM9AQ8IZU1 332 aaPredicted RBP5.56□□□□□ -1.52
VPS29-202ENST00000447578 BCL6BQ8N143 479 aaPredicted RBP5.56□□□□□ -1.52
VPS29-202ENST00000447578 PRPF38AQ8NAV1 312 aaKnown RBP5.56□□□□□ -1.52
VPS29-202ENST00000447578 CAAP1Q9H8G2 361 aa5.56□□□□□ -1.52
VPS29-202ENST00000447578 SLC2A4RGQ9NR83 387 aa5.56□□□□□ -1.52
VPS29-202ENST00000447578 KCNH7Q9NS40 1196 aa5.56□□□□□ -1.52
VPS29-202ENST00000447578 NDOR1Q9UHB4 597 aa5.56□□□□□ -1.52
VPS29-202ENST00000447578 MAGEL2Q9UJ55 1249 aa5.56□□□□□ -1.52
VPS29-202ENST00000447578 BAZ1AQ9NRL2 1556 aaPredicted RBP5.55□□□□□ -1.52
VPS29-202ENST00000447578 A0A087X1B8 175 aa5.55□□□□□ -1.52
VPS29-202ENST00000447578 RAPGEF3O95398 923 aa5.55□□□□□ -1.52
VPS29-202ENST00000447578 INHBEP58166 350 aa5.55□□□□□ -1.52
VPS29-202ENST00000447578 HHEXQ03014 270 aa5.55□□□□□ -1.52
VPS29-202ENST00000447578 SAFB2Q14151 953 aaKnown RBP eCLIP5.55□□□□□ -1.52
VPS29-202ENST00000447578 TMEM132BQ14DG7 1078 aa5.55□□□□□ -1.52
VPS29-202ENST00000447578 HSP90AB2PQ58FF8 381 aa5.55□□□□□ -1.52
VPS29-202ENST00000447578 ZNF627Q7L945 461 aa5.55□□□□□ -1.52
VPS29-202ENST00000447578 LDLRAD3Q86YD5 345 aa5.55□□□□□ -1.52
VPS29-202ENST00000447578 SLC7A14Q8TBB6 771 aa5.55□□□□□ -1.52
VPS29-202ENST00000447578 ERCC4Q92889 916 aaPredicted RBP5.55□□□□□ -1.52
VPS29-202ENST00000447578 ZNF703Q9H7S9 590 aaPredicted RBP5.55□□□□□ -1.52
VPS29-202ENST00000447578 GIT1Q9Y2X7 761 aa5.55□□□□□ -1.52
VPS29-202ENST00000447578 TNFRSF18Q9Y5U5 241 aa5.55□□□□□ -1.52
VPS29-202ENST00000447578 A0A087X0B3 334 aa5.54□□□□□ -1.52
VPS29-202ENST00000447578 GOLGA6L22H0YM25 854 aa5.54□□□□□ -1.52
VPS29-202ENST00000447578 PLD2O14939 933 aa5.54□□□□□ -1.52
VPS29-202ENST00000447578 PDE8AO60658 829 aa5.54□□□□□ -1.52
VPS29-202ENST00000447578 ADH4P08319 380 aa5.54□□□□□ -1.52
VPS29-202ENST00000447578 SOX5P35711 763 aa5.54□□□□□ -1.52
VPS29-202ENST00000447578 INHBCP55103 352 aa5.54□□□□□ -1.52
VPS29-202ENST00000447578 ATP2C1P98194 919 aaPredicted RBP5.54□□□□□ -1.52
VPS29-202ENST00000447578 RIN1Q13671 783 aa5.54□□□□□ -1.52
VPS29-202ENST00000447578 RRP1BQ14684 758 aaKnown RBP5.54□□□□□ -1.52
VPS29-202ENST00000447578 FNDC3BQ53EP0 1204 aaKnown RBP5.54□□□□□ -1.52
VPS29-202ENST00000447578 OVCH1Q7RTY7 1134 aa5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms