RNA–Protein interactions for RNA: ENST00000359759.8

COL18A1-203, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL18A1, Length 6,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-203ENST00000359759 COL17A1Q9UMD9 1497 aaPredicted RBP17.11■□□□□ 0.33
COL18A1-203ENST00000359759 E9PMD0 336 aa17.11■□□□□ 0.33
COL18A1-203ENST00000359759 SH2B2O14492 632 aaPredicted RBP17.11■□□□□ 0.33
COL18A1-203ENST00000359759 DDIASQ8IXT1 998 aa17.11■□□□□ 0.33
COL18A1-203ENST00000359759 RNF25Q96BH1 459 aaPredicted RBP17.11■□□□□ 0.33
COL18A1-203ENST00000359759 NDE1Q9NXR1 346 aa17.11■□□□□ 0.33
COL18A1-203ENST00000359759 ARHGAP26Q9UNA1 814 aa17.11■□□□□ 0.33
COL18A1-203ENST00000359759 KRT4P19013 534 aa17.11■□□□□ 0.33
COL18A1-203ENST00000359759 PPP2R2AP63151 447 aa17.11■□□□□ 0.33
COL18A1-203ENST00000359759 UBE3CQ15386 1083 aa17.11■□□□□ 0.33
COL18A1-203ENST00000359759 TEX12Q9BXU0 123 aa17.11■□□□□ 0.33
COL18A1-203ENST00000359759 CASS4Q9NQ75 786 aa17.11■□□□□ 0.33
COL18A1-203ENST00000359759 HDAC6Q9UBN7 1215 aa17.11■□□□□ 0.33
COL18A1-203ENST00000359759 CNOT8Q9UFF9 292 aaKnown RBP17.11■□□□□ 0.33
COL18A1-203ENST00000359759 TRAF3IP3Q9Y228 551 aa17.11■□□□□ 0.33
COL18A1-203ENST00000359759 PPEF1O14829 653 aaPredicted RBP17.11■□□□□ 0.33
COL18A1-203ENST00000359759 CUL3Q13618 768 aa17.11■□□□□ 0.33
COL18A1-203ENST00000359759 MIGA2Q7L4E1 593 aa17.11■□□□□ 0.33
COL18A1-203ENST00000359759 PUS7LQ9H0K6 701 aaKnown RBP17.11■□□□□ 0.33
COL18A1-203ENST00000359759 CFAP69A5D8W1 941 aa17.11■□□□□ 0.33
COL18A1-203ENST00000359759 CHUKO15111 745 aa17.11■□□□□ 0.33
COL18A1-203ENST00000359759 SLC27A3Q5K4L6 730 aa17.11■□□□□ 0.33
COL18A1-203ENST00000359759 GPATCH4Q5T3I0 446 aaKnown RBP17.11■□□□□ 0.33
COL18A1-203ENST00000359759 PPHLN1Q8NEY8 458 aaKnown RBP17.11■□□□□ 0.33
COL18A1-203ENST00000359759 POLD4Q9HCU8 107 aa17.11■□□□□ 0.33
COL18A1-203ENST00000359759 PER1O15534 1290 aaPredicted RBP17.1■□□□□ 0.33
COL18A1-203ENST00000359759 HDAC4P56524 1084 aa17.1■□□□□ 0.33
COL18A1-203ENST00000359759 AP1B1Q10567 949 aa17.1■□□□□ 0.33
COL18A1-203ENST00000359759 ADNPQ9H2P0 1102 aa17.1■□□□□ 0.33
COL18A1-203ENST00000359759 SLC8A2Q9UPR5 921 aa17.1■□□□□ 0.33
COL18A1-203ENST00000359759 AURKCQ9UQB9 309 aa17.1■□□□□ 0.33
COL18A1-203ENST00000359759 ZRANB2O95218 330 aaKnown RBP eCLIP17.1■□□□□ 0.332e-6■■■■□ 22
COL18A1-203ENST00000359759 PSAPP07602 524 aa17.1■□□□□ 0.33
COL18A1-203ENST00000359759 PPARGP37231 505 aaPredicted RBP17.1■□□□□ 0.33
COL18A1-203ENST00000359759 MRPL28Q13084 256 aaKnown RBP17.1■□□□□ 0.33
COL18A1-203ENST00000359759 DYNC1I2Q13409 638 aaKnown RBP17.1■□□□□ 0.33
COL18A1-203ENST00000359759 PI16Q6UXB8 463 aa17.1■□□□□ 0.33
COL18A1-203ENST00000359759 OSBPP22059 807 aa17.1■□□□□ 0.33
COL18A1-203ENST00000359759 ARFIP2P53365 341 aa17.1■□□□□ 0.33
COL18A1-203ENST00000359759 SYCP2LQ5T4T6 812 aa17.1■□□□□ 0.33
COL18A1-203ENST00000359759 PPP1R2P3Q6NXS1 205 aa17.1■□□□□ 0.33
COL18A1-203ENST00000359759 ULK4Q96C45 1275 aa17.1■□□□□ 0.33
COL18A1-203ENST00000359759 DBNDD1Q9H9R9 158 aa17.1■□□□□ 0.33
COL18A1-203ENST00000359759 ABHD10Q9NUJ1 306 aa17.1■□□□□ 0.33
COL18A1-203ENST00000359759 STOML1Q9UBI4 398 aa17.1■□□□□ 0.33
COL18A1-203ENST00000359759 ATP5HO75947 161 aa17.1■□□□□ 0.33
COL18A1-203ENST00000359759 ARMCX2Q7L311 632 aa17.1■□□□□ 0.33
COL18A1-203ENST00000359759 ETNK1Q9HBU6 452 aa17.1■□□□□ 0.33
COL18A1-203ENST00000359759 ALDH18A1P54886 795 aaKnown RBP17.1■□□□□ 0.33
COL18A1-203ENST00000359759 PAWRQ96IZ0 340 aaKnown RBP17.1■□□□□ 0.33
COL18A1-203ENST00000359759 RAPGEF6Q8TEU7 1601 aa17.1■□□□□ 0.33
COL18A1-203ENST00000359759 E5RI56 91 aa17.09■□□□□ 0.33
COL18A1-203ENST00000359759 RESTQ13127 1097 aa17.09■□□□□ 0.33
COL18A1-203ENST00000359759 PSMD2Q13200 908 aa17.09■□□□□ 0.33
COL18A1-203ENST00000359759 CC2D1AQ6P1N0 951 aaPredicted RBP17.09■□□□□ 0.33
COL18A1-203ENST00000359759 PDXDC2PQ6P474 469 aa17.09■□□□□ 0.33
COL18A1-203ENST00000359759 BTNL9Q6UXG8 535 aa17.09■□□□□ 0.33
COL18A1-203ENST00000359759 ANO5Q75V66 913 aa17.09■□□□□ 0.33
COL18A1-203ENST00000359759 ADAM22Q9P0K1 906 aa17.09■□□□□ 0.33
COL18A1-203ENST00000359759 PCSK1NQ9UHG2 260 aa17.09■□□□□ 0.33
COL18A1-203ENST00000359759 LRRC53A6NM62 1247 aa17.09■□□□□ 0.33
COL18A1-203ENST00000359759 TRPC1P48995 793 aa17.09■□□□□ 0.33
COL18A1-203ENST00000359759 LRRC36Q1X8D7 754 aa17.09■□□□□ 0.33
COL18A1-203ENST00000359759 TTC8Q8TAM2 541 aa17.09■□□□□ 0.33
COL18A1-203ENST00000359759 USPL1Q5W0Q7 1092 aa17.09■□□□□ 0.33
COL18A1-203ENST00000359759 THNSL1Q8IYQ7 743 aa17.09■□□□□ 0.33
COL18A1-203ENST00000359759 TEKT4Q8WW24 435 aa17.09■□□□□ 0.33
COL18A1-203ENST00000359759 NUP85Q9BW27 656 aa17.09■□□□□ 0.33
COL18A1-203ENST00000359759 HPS4Q9NQG7 708 aa17.09■□□□□ 0.33
COL18A1-203ENST00000359759 PDE8BO95263 885 aa17.09■□□□□ 0.33
COL18A1-203ENST00000359759 BMP3P12645 472 aa17.09■□□□□ 0.33
COL18A1-203ENST00000359759 GPS1Q13098 491 aa17.09■□□□□ 0.33
COL18A1-203ENST00000359759 PTK2BQ14289 1009 aa17.09■□□□□ 0.33
COL18A1-203ENST00000359759 DCAF4L1Q3SXM0 396 aa17.09■□□□□ 0.33
COL18A1-203ENST00000359759 RHOT2Q8IXI1 618 aa17.09■□□□□ 0.33
COL18A1-203ENST00000359759 EGFL8Q99944 293 aa17.09■□□□□ 0.33
COL18A1-203ENST00000359759 MYL1P05976 194 aa17.08■□□□□ 0.33
COL18A1-203ENST00000359759 ADD2P35612 726 aa17.08■□□□□ 0.33
COL18A1-203ENST00000359759 SOX11P35716 441 aa17.08■□□□□ 0.33
COL18A1-203ENST00000359759 ATXN3P54252 364 aaPredicted RBP17.08■□□□□ 0.33
COL18A1-203ENST00000359759 CCDC92Q53HC0 331 aaPredicted RBP17.08■□□□□ 0.33
COL18A1-203ENST00000359759 ZBED8Q8IZ13 594 aa17.08■□□□□ 0.33
COL18A1-203ENST00000359759 GCNAQ96QF7 691 aa17.08■□□□□ 0.33
COL18A1-203ENST00000359759 PRMT1Q99873 361 aaKnown RBP17.08■□□□□ 0.33
COL18A1-203ENST00000359759 ZSWIM5Q9P217 1185 aa17.08■□□□□ 0.33
COL18A1-203ENST00000359759 PLEKHA8P1O95397 391 aa17.08■□□□□ 0.33
COL18A1-203ENST00000359759 CDC37Q16543 378 aaPredicted RBP17.08■□□□□ 0.33
COL18A1-203ENST00000359759 PROSER3Q2NL68 480 aa17.08■□□□□ 0.33
COL18A1-203ENST00000359759 TJAP1Q5JTD0 557 aa17.08■□□□□ 0.33
COL18A1-203ENST00000359759 C1orf228Q6PIY5 440 aa17.08■□□□□ 0.33
COL18A1-203ENST00000359759 TEX2Q8IWB9 1127 aa17.08■□□□□ 0.33
COL18A1-203ENST00000359759 ADAM33Q9BZ11 813 aa17.08■□□□□ 0.33
COL18A1-203ENST00000359759 SEC31BQ9NQW1 1179 aa17.08■□□□□ 0.33
COL18A1-203ENST00000359759 PRPF4O43172 522 aaKnown RBP eCLIP17.08■□□□□ 0.322e-7■■■□□ 18.3
COL18A1-203ENST00000359759 PCCAP05165 728 aaPredicted RBP17.08■□□□□ 0.32
COL18A1-203ENST00000359759 EIF2AK2P19525 551 aaKnown RBP17.08■□□□□ 0.32
COL18A1-203ENST00000359759 PDIA2Q13087 525 aaKnown RBP17.08■□□□□ 0.32
COL18A1-203ENST00000359759 PDXDC1Q6P996 788 aa17.08■□□□□ 0.32
COL18A1-203ENST00000359759 IL17REQ8NFR9 667 aa17.08■□□□□ 0.32
COL18A1-203ENST00000359759 EPAS1Q99814 870 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 92.2 ms