RNA–Protein interactions for RNA: ENST00000337331.9

NPHP3-201, Transcript of nephrocystin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP3, Length 4,362 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-201ENST00000337331 METTL13Q8N6R0 699 aa17.24■□□□□ 0.35
NPHP3-201ENST00000337331 RUBCNQ92622 972 aa17.24■□□□□ 0.35
NPHP3-201ENST00000337331 ARHGAP42A6NI28 874 aa17.23■□□□□ 0.35
NPHP3-201ENST00000337331 POTEMA6NI47 508 aa17.23■□□□□ 0.35
NPHP3-201ENST00000337331 TNFAIP1Q13829 316 aa17.23■□□□□ 0.35
NPHP3-201ENST00000337331 PSMD6Q15008 389 aa17.23■□□□□ 0.35
NPHP3-201ENST00000337331 ALX1Q15699 326 aa17.23■□□□□ 0.35
NPHP3-201ENST00000337331 RABL6Q3YEC7 729 aaPredicted RBP17.23■□□□□ 0.35
NPHP3-201ENST00000337331 GRAMD4Q6IC98 578 aa17.23■□□□□ 0.35
NPHP3-201ENST00000337331 ATG9AQ7Z3C6 839 aa17.23■□□□□ 0.35
NPHP3-201ENST00000337331 ILDR1Q86SU0 546 aaPredicted RBP17.23■□□□□ 0.35
NPHP3-201ENST00000337331 TMEM47Q9BQJ4 181 aa17.23■□□□□ 0.35
NPHP3-201ENST00000337331 GORASP1Q9BQQ3 440 aa17.23■□□□□ 0.35
NPHP3-201ENST00000337331 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.23■□□□□ 0.35
NPHP3-201ENST00000337331 POC1B-GALNT4F8VUJ3 575 aa17.23■□□□□ 0.35
NPHP3-201ENST00000337331 SERPINB3P29508 390 aa17.23■□□□□ 0.35
NPHP3-201ENST00000337331 MAN1A1P33908 653 aa17.23■□□□□ 0.35
NPHP3-201ENST00000337331 KCNJ2P63252 427 aa17.23■□□□□ 0.35
NPHP3-201ENST00000337331 HADHQ16836 314 aaKnown RBP17.23■□□□□ 0.35
NPHP3-201ENST00000337331 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.23■□□□□ 0.35
NPHP3-201ENST00000337331 LRRC37BQ96QE4 947 aa17.23■□□□□ 0.35
NPHP3-201ENST00000337331 WDR11Q9BZH6 1224 aa17.23■□□□□ 0.35
NPHP3-201ENST00000337331 ANKFY1Q9P2R3 1169 aa17.23■□□□□ 0.35
NPHP3-201ENST00000337331 ITIH6Q6UXX5 1313 aa17.23■□□□□ 0.35
NPHP3-201ENST00000337331 TRAPPC3O43617 180 aa17.23■□□□□ 0.35
NPHP3-201ENST00000337331 MFAP3P55082 362 aa17.23■□□□□ 0.35
NPHP3-201ENST00000337331 IL9RQ01113 521 aa17.23■□□□□ 0.35
NPHP3-201ENST00000337331 NLGN1Q8N2Q7 840 aa17.23■□□□□ 0.35
NPHP3-201ENST00000337331 NACC1Q96RE7 527 aa17.23■□□□□ 0.35
NPHP3-201ENST00000337331 CRB1P82279 1406 aa17.23■□□□□ 0.35
NPHP3-201ENST00000337331 MADDQ8WXG6 1647 aa17.22■□□□□ 0.35
NPHP3-201ENST00000337331 GRIN2DO15399 1336 aa17.22■□□□□ 0.35
NPHP3-201ENST00000337331 QPCTQ16769 361 aa17.22■□□□□ 0.35
NPHP3-201ENST00000337331 RPS6KC1Q96S38 1066 aa17.22■□□□□ 0.35
NPHP3-201ENST00000337331 DCP1AQ9NPI6 582 aaPredicted RBP17.22■□□□□ 0.35
NPHP3-201ENST00000337331 LIMA1Q9UHB6 759 aaKnown RBP17.22■□□□□ 0.35
NPHP3-201ENST00000337331 A0A0G2JLW4 131 aa17.22■□□□□ 0.35
NPHP3-201ENST00000337331 MAPK13O15264 365 aa17.22■□□□□ 0.35
NPHP3-201ENST00000337331 SART1O43290 800 aaKnown RBP17.22■□□□□ 0.35
NPHP3-201ENST00000337331 RTN3O95197 1032 aaPredicted RBP17.22■□□□□ 0.35
NPHP3-201ENST00000337331 ACSL3O95573 720 aa17.22■□□□□ 0.35
NPHP3-201ENST00000337331 FAM200BP0CF97 657 aa17.22■□□□□ 0.35
NPHP3-201ENST00000337331 GHRP10912 638 aa17.22■□□□□ 0.35
NPHP3-201ENST00000337331 HERVK_113P62684 666 aa17.22■□□□□ 0.35
NPHP3-201ENST00000337331 BYSLQ13895 437 aaKnown RBP17.22■□□□□ 0.35
NPHP3-201ENST00000337331 CRELD2Q6UXH1 353 aaPredicted RBP17.22■□□□□ 0.35
NPHP3-201ENST00000337331 LRIG3Q6UXM1 1119 aa17.22■□□□□ 0.35
NPHP3-201ENST00000337331 PP2D1A8MPX8 630 aa17.22■□□□□ 0.35
NPHP3-201ENST00000337331 GUCY1A2P33402 732 aa17.22■□□□□ 0.35
NPHP3-201ENST00000337331 POLGP54098 1239 aaPredicted RBP17.22■□□□□ 0.35
NPHP3-201ENST00000337331 YARSP54577 528 aaKnown RBP17.22■□□□□ 0.35
NPHP3-201ENST00000337331 YWHAEP62258 255 aaKnown RBP17.22■□□□□ 0.35
NPHP3-201ENST00000337331 CYP4F22Q6NT55 531 aa17.22■□□□□ 0.35
NPHP3-201ENST00000337331 ZBTB8OSQ8IWT0 167 aa17.22■□□□□ 0.35
NPHP3-201ENST00000337331 DNAJC17Q9NVM6 304 aaKnown RBP17.22■□□□□ 0.35
NPHP3-201ENST00000337331 MINPP1Q9UNW1 487 aa17.22■□□□□ 0.35
NPHP3-201ENST00000337331 ARL2BPQ9Y2Y0 163 aa17.22■□□□□ 0.35
NPHP3-201ENST00000337331 RNF8O76064 485 aa17.21■□□□□ 0.35
NPHP3-201ENST00000337331 TMEM191BP0C7N4 346 aa17.21■□□□□ 0.35
NPHP3-201ENST00000337331 CA8P35219 290 aa17.21■□□□□ 0.35
NPHP3-201ENST00000337331 GRIK3Q13003 919 aa17.21■□□□□ 0.35
NPHP3-201ENST00000337331 SLC44A4Q53GD3 710 aa17.21■□□□□ 0.35
NPHP3-201ENST00000337331 HSP90AA5PQ58FG0 334 aa17.21■□□□□ 0.35
NPHP3-201ENST00000337331 CAVIN3Q969G5 261 aa17.21■□□□□ 0.35
NPHP3-201ENST00000337331 PAGR1Q9BTK6 254 aa17.21■□□□□ 0.35
NPHP3-201ENST00000337331 PARVGQ9HBI0 331 aa17.21■□□□□ 0.35
NPHP3-201ENST00000337331 CD44P16070 742 aaKnown RBP17.21■□□□□ 0.35
NPHP3-201ENST00000337331 PHBP35232 272 aa17.21■□□□□ 0.35
NPHP3-201ENST00000337331 UNC13DQ70J99 1090 aa17.21■□□□□ 0.35
NPHP3-201ENST00000337331 SH3RF3Q8TEJ3 882 aaPredicted RBP17.21■□□□□ 0.35
NPHP3-201ENST00000337331 ATP2A3Q93084 1043 aa17.21■□□□□ 0.35
NPHP3-201ENST00000337331 ZNF408Q9H9D4 720 aa17.21■□□□□ 0.35
NPHP3-201ENST00000337331 USP42Q9H9J4 1324 aaKnown RBP17.21■□□□□ 0.35
NPHP3-201ENST00000337331 H0YCG3 227 aa17.21■□□□□ 0.35
NPHP3-201ENST00000337331 POLR2BP30876 1174 aaKnown RBP17.21■□□□□ 0.35
NPHP3-201ENST00000337331 MAPK4P31152 587 aa17.21■□□□□ 0.35
NPHP3-201ENST00000337331 SCNN1BP51168 640 aa17.21■□□□□ 0.35
NPHP3-201ENST00000337331 BPIFB4P59827 614 aa17.21■□□□□ 0.35
NPHP3-201ENST00000337331 ANKRD35Q8N283 1001 aa17.21■□□□□ 0.35
NPHP3-201ENST00000337331 NME8Q8N427 588 aa17.21■□□□□ 0.35
NPHP3-201ENST00000337331 PBKQ96KB5 322 aa17.21■□□□□ 0.35
NPHP3-201ENST00000337331 MTA3Q9BTC8 594 aa17.21■□□□□ 0.35
NPHP3-201ENST00000337331 LAMC1P11047 1609 aa17.21■□□□□ 0.35
NPHP3-201ENST00000337331 ALKQ9UM73 1620 aa17.21■□□□□ 0.35
NPHP3-201ENST00000337331 PPEF1O14829 653 aaPredicted RBP17.21■□□□□ 0.34
NPHP3-201ENST00000337331 AMPD2Q01433 879 aa17.21■□□□□ 0.34
NPHP3-201ENST00000337331 AGBL2Q5U5Z8 902 aa17.21■□□□□ 0.34
NPHP3-201ENST00000337331 ARHGEF18Q6ZSZ5 1173 aa17.21■□□□□ 0.34
NPHP3-201ENST00000337331 CELF1Q92879 486 aaKnown RBP17.21■□□□□ 0.34
NPHP3-201ENST00000337331 TTC1Q99614 292 aa17.21■□□□□ 0.34
NPHP3-201ENST00000337331 UBE2TQ9NPD8 197 aaPredicted RBP17.21■□□□□ 0.34
NPHP3-201ENST00000337331 EIF4ENIF1Q9NRA8 985 aaKnown RBP17.21■□□□□ 0.34
NPHP3-201ENST00000337331 SPATA31A3Q5VYP0 1347 aa17.2■□□□□ 0.34
NPHP3-201ENST00000337331 PNMA6FA0A0J9YX94 578 aa17.2■□□□□ 0.34
NPHP3-201ENST00000337331 LRRC53A6NM62 1247 aa17.2■□□□□ 0.34
NPHP3-201ENST00000337331 SFI1A8K8P3 1242 aa17.2■□□□□ 0.34
NPHP3-201ENST00000337331 ORC4O43929 436 aa17.2■□□□□ 0.34
NPHP3-201ENST00000337331 LMNAP02545 664 aaKnown RBP17.2■□□□□ 0.34
NPHP3-201ENST00000337331 GSTA1P08263 222 aa17.2■□□□□ 0.34
NPHP3-201ENST00000337331 MXI1P50539 228 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms