RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 ZBTB39O15060 712 aa18.52■□□□□ 0.56
LDLR-206ENST00000557958 GTF2F1P35269 517 aaKnown RBP eCLIP18.52■□□□□ 0.562e-14■□□□□ 9.4
LDLR-206ENST00000557958 STXBP2Q15833 593 aa18.52■□□□□ 0.56
LDLR-206ENST00000557958 HS2ST1Q7LGA3 356 aa18.52■□□□□ 0.56
LDLR-206ENST00000557958 TRIM59Q8IWR1 403 aa18.52■□□□□ 0.56
LDLR-206ENST00000557958 SLC17A8Q8NDX2 589 aa18.52■□□□□ 0.56
LDLR-206ENST00000557958 ATP6V0A1Q93050 837 aa18.52■□□□□ 0.56
LDLR-206ENST00000557958 DRC1Q96MC2 740 aa18.52■□□□□ 0.56
LDLR-206ENST00000557958 EDEM3Q9BZQ6 932 aa18.52■□□□□ 0.56
LDLR-206ENST00000557958 ANKEF1Q9NU02 776 aa18.52■□□□□ 0.56
LDLR-206ENST00000557958 ADGRG1Q9Y653 693 aa18.52■□□□□ 0.56
LDLR-206ENST00000557958 ATP9AO75110 1047 aa18.52■□□□□ 0.55
LDLR-206ENST00000557958 HIP1RO75146 1068 aa18.52■□□□□ 0.55
LDLR-206ENST00000557958 MAPTP10636 758 aaKnown RBP18.52■□□□□ 0.55
LDLR-206ENST00000557958 EPB41P11171 864 aaKnown RBP18.52■□□□□ 0.55
LDLR-206ENST00000557958 RARRES1P49788 294 aa18.52■□□□□ 0.55
LDLR-206ENST00000557958 INHBEP58166 350 aa18.52■□□□□ 0.55
LDLR-206ENST00000557958 SREBF2Q12772 1141 aa18.52■□□□□ 0.55
LDLR-206ENST00000557958 NFIL3Q16649 462 aa18.52■□□□□ 0.55
LDLR-206ENST00000557958 RAD9BQ6WBX8 426 aa18.52■□□□□ 0.55
LDLR-206ENST00000557958 MPHOSPH6Q99547 160 aaKnown RBP18.52■□□□□ 0.55
LDLR-206ENST00000557958 ARMCX3Q9UH62 379 aaPredicted RBP18.52■□□□□ 0.55
LDLR-206ENST00000557958 SIK3Q9Y2K2 1263 aa18.52■□□□□ 0.55
LDLR-206ENST00000557958 IVNS1ABPQ9Y6Y0 642 aa18.52■□□□□ 0.55
LDLR-206ENST00000557958 A0A0G2JMZ2 1700 aa18.52■□□□□ 0.55
LDLR-206ENST00000557958 SOWAHBA6NEL2 793 aa18.51■□□□□ 0.55
LDLR-206ENST00000557958 RIOK3O14730 519 aaKnown RBP18.51■□□□□ 0.55
LDLR-206ENST00000557958 NR3C1P04150 777 aa18.51■□□□□ 0.55
LDLR-206ENST00000557958 PSAPP07602 524 aa18.51■□□□□ 0.55
LDLR-206ENST00000557958 ALDH5A1P51649 535 aaPredicted RBP18.51■□□□□ 0.55
LDLR-206ENST00000557958 DEFB115Q30KQ5 88 aa18.51■□□□□ 0.55
LDLR-206ENST00000557958 OTUD6AQ7L8S5 288 aa18.51■□□□□ 0.55
LDLR-206ENST00000557958 EEPD1Q7L9B9 569 aa18.51■□□□□ 0.55
LDLR-206ENST00000557958 ZNF720Q7Z2F6 126 aa18.51■□□□□ 0.55
LDLR-206ENST00000557958 NEK11Q8NG66 645 aa18.51■□□□□ 0.55
LDLR-206ENST00000557958 MMRN2Q9H8L6 949 aa18.51■□□□□ 0.55
LDLR-206ENST00000557958 JPH1Q9HDC5 661 aaPredicted RBP18.51■□□□□ 0.55
LDLR-206ENST00000557958 ASTN1O14525 1302 aa18.5■□□□□ 0.55
LDLR-206ENST00000557958 SFI1A8K8P3 1242 aa18.5■□□□□ 0.55
LDLR-206ENST00000557958 AOC2O75106 756 aa18.5■□□□□ 0.55
LDLR-206ENST00000557958 EIF3JO75822 258 aaKnown RBP18.5■□□□□ 0.55
LDLR-206ENST00000557958 IPO7O95373 1038 aaKnown RBP18.5■□□□□ 0.55
LDLR-206ENST00000557958 CCNE2O96020 404 aa18.5■□□□□ 0.55
LDLR-206ENST00000557958 MEA1Q16626 185 aa18.5■□□□□ 0.55
LDLR-206ENST00000557958 SHCBP1Q8NEM2 672 aa18.5■□□□□ 0.55
LDLR-206ENST00000557958 DESI2Q9BSY9 194 aa18.5■□□□□ 0.55
LDLR-206ENST00000557958 NUCKS1Q9H1E3 243 aaKnown RBP18.5■□□□□ 0.55
LDLR-206ENST00000557958 SLC9A2Q9UBY0 812 aa18.5■□□□□ 0.55
LDLR-206ENST00000557958 SPATA31C2B4DYI2 1134 aa18.5■□□□□ 0.55
LDLR-206ENST00000557958 RNF225M0QZC1 329 aaPredicted RBP18.5■□□□□ 0.55
LDLR-206ENST00000557958 SORBS3O60504 671 aa18.5■□□□□ 0.55
LDLR-206ENST00000557958 KCNA2P16389 499 aa18.5■□□□□ 0.55
LDLR-206ENST00000557958 NMT1P30419 496 aaKnown RBP18.5■□□□□ 0.55
LDLR-206ENST00000557958 CYLC1P35663 651 aaPredicted RBP18.5■□□□□ 0.55
LDLR-206ENST00000557958 CDK17Q00537 523 aa18.5■□□□□ 0.55
LDLR-206ENST00000557958 MTF1Q14872 753 aa18.5■□□□□ 0.55
LDLR-206ENST00000557958 SYT10Q6XYQ8 523 aa18.5■□□□□ 0.55
LDLR-206ENST00000557958 SEPT14Q6ZU15 432 aa18.5■□□□□ 0.55
LDLR-206ENST00000557958 MORF4L1Q9UBU8 362 aa18.5■□□□□ 0.55
LDLR-206ENST00000557958 XRCC5P13010 732 aaKnown RBP18.49■□□□□ 0.55
LDLR-206ENST00000557958 HOXD13P35453 343 aa18.49■□□□□ 0.55
LDLR-206ENST00000557958 FAM110CQ1W6H9 321 aa18.49■□□□□ 0.55
LDLR-206ENST00000557958 CCDC170Q8IYT3 715 aa18.49■□□□□ 0.55
LDLR-206ENST00000557958 MKNK1Q9BUB5 465 aa18.49■□□□□ 0.55
LDLR-206ENST00000557958 GBP3Q9H0R5 595 aa18.49■□□□□ 0.55
LDLR-206ENST00000557958 ZFYVE28Q9HCC9 887 aa18.49■□□□□ 0.55
LDLR-206ENST00000557958 FAM207AQ9NSI2 230 aaPredicted RBP18.49■□□□□ 0.55
LDLR-206ENST00000557958 AGPAT5Q9NUQ2 364 aa18.49■□□□□ 0.55
LDLR-206ENST00000557958 K7ENM7 598 aa18.48■□□□□ 0.55
LDLR-206ENST00000557958 USO1O60763 962 aaKnown RBP18.48■□□□□ 0.55
LDLR-206ENST00000557958 PLS3P13797 630 aa18.48■□□□□ 0.55
LDLR-206ENST00000557958 ICAM3P32942 547 aa18.48■□□□□ 0.55
LDLR-206ENST00000557958 KRT83P78385 493 aa18.48■□□□□ 0.55
LDLR-206ENST00000557958 RBM10P98175 930 aaKnown RBP18.48■□□□□ 0.55
LDLR-206ENST00000557958 MAPK7Q13164 816 aa18.48■□□□□ 0.55
LDLR-206ENST00000557958 ARHGAP29Q52LW3 1261 aa18.48■□□□□ 0.55
LDLR-206ENST00000557958 MIS18BP1Q6P0N0 1132 aa18.48■□□□□ 0.55
LDLR-206ENST00000557958 CACNA2D4Q7Z3S7 1137 aa18.48■□□□□ 0.55
LDLR-206ENST00000557958 FAM133AQ8N9E0 248 aa18.48■□□□□ 0.55
LDLR-206ENST00000557958 HHIPL1Q96JK4 782 aa18.48■□□□□ 0.55
LDLR-206ENST00000557958 TMEM206Q9H813 350 aa18.48■□□□□ 0.55
LDLR-206ENST00000557958 CGNQ9P2M7 1197 aaKnown RBP18.48■□□□□ 0.55
LDLR-206ENST00000557958 RGS20O76081 388 aa18.48■□□□□ 0.55
LDLR-206ENST00000557958 NDUFA10O95299 355 aa18.48■□□□□ 0.55
LDLR-206ENST00000557958 ADORA2AP29274 412 aa18.48■□□□□ 0.55
LDLR-206ENST00000557958 KLK7P49862 253 aa18.48■□□□□ 0.55
LDLR-206ENST00000557958 APLP1P51693 650 aa18.48■□□□□ 0.55
LDLR-206ENST00000557958 XKR9Q5GH70 373 aa18.48■□□□□ 0.55
LDLR-206ENST00000557958 GPR142Q7Z601 462 aa18.48■□□□□ 0.55
LDLR-206ENST00000557958 SYCP3Q8IZU3 236 aa18.48■□□□□ 0.55
LDLR-206ENST00000557958 FIZ1Q96SL8 496 aa18.48■□□□□ 0.55
LDLR-206ENST00000557958 DNAI1Q9UI46 699 aa18.48■□□□□ 0.55
LDLR-206ENST00000557958 EPN1Q9Y6I3 576 aaPredicted RBP18.48■□□□□ 0.55
LDLR-206ENST00000557958 RASSF10A6NK89 507 aa18.47■□□□□ 0.55
LDLR-206ENST00000557958 KIF5CO60282 957 aa18.47■□□□□ 0.55
LDLR-206ENST00000557958 HNRNPH3P31942 346 aaKnown RBP18.47■□□□□ 0.55
LDLR-206ENST00000557958 PSMC2P35998 433 aaKnown RBP18.47■□□□□ 0.55
LDLR-206ENST00000557958 SP4Q02446 784 aa18.47■□□□□ 0.55
LDLR-206ENST00000557958 MYBPC2Q14324 1141 aa18.47■□□□□ 0.55
LDLR-206ENST00000557958 UGCGQ16739 394 aa18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms