RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 NUGGCQ68CJ6 796 aa5.73□□□□□ -1.49
USP28-213ENST00000544967 SCYL3Q8IZE3 742 aa5.73□□□□□ -1.49
USP28-213ENST00000544967 TSEN2Q8NCE0 465 aaKnown RBP5.73□□□□□ -1.49
USP28-213ENST00000544967 TMC2Q8TDI7 906 aa5.73□□□□□ -1.49
USP28-213ENST00000544967 EDEM3Q9BZQ6 932 aa5.73□□□□□ -1.49
USP28-213ENST00000544967 TMEM39BQ9GZU3 492 aa5.73□□□□□ -1.49
USP28-213ENST00000544967 SUDS3Q9H7L9 328 aaPredicted RBP5.73□□□□□ -1.49
USP28-213ENST00000544967 GBA2Q9HCG7 927 aaPredicted RBP5.73□□□□□ -1.49
USP28-213ENST00000544967 HAUS2Q9NVX0 235 aa5.73□□□□□ -1.49
USP28-213ENST00000544967 DDX56Q9NY93 547 aaKnown RBP5.73□□□□□ -1.49
USP28-213ENST00000544967 ABCF2Q9UG63 623 aa5.73□□□□□ -1.49
USP28-213ENST00000544967 EPB41L3Q9Y2J2 1087 aaPredicted RBP5.73□□□□□ -1.49
USP28-213ENST00000544967 MRPL42Q9Y6G3 142 aaKnown RBP5.73□□□□□ -1.49
USP28-213ENST00000544967 ABCB11O95342 1321 aa5.73□□□□□ -1.49
USP28-213ENST00000544967 BICDL2A1A5D9 508 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 LGALS16A8MUM7 142 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 S100BP04271 92 aaPredicted RBP5.72□□□□□ -1.49
USP28-213ENST00000544967 IBSPP21815 317 aaPredicted RBP5.72□□□□□ -1.49
USP28-213ENST00000544967 KRT9P35527 623 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 CAP2P40123 477 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 SFSWAPQ12872 951 aaKnown RBP5.72□□□□□ -1.49
USP28-213ENST00000544967 DPYDQ12882 1025 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 KCNB1Q14721 858 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 NBPF12Q5TAG4 269 aaPredicted RBP5.72□□□□□ -1.49
USP28-213ENST00000544967 FOXR2Q6PJQ5 311 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 MAATS1Q7Z4T9 603 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 PIGWQ7Z7B1 504 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 CDAN1Q8IWY9 1227 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 IFNL3Q8IZI9 196 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 CCDC63Q8NA47 563 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 SPDYE1Q8NFV5 336 aaPredicted RBP5.72□□□□□ -1.49
USP28-213ENST00000544967 FERMT2Q96AC1 680 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 TTYH3Q9C0H2 523 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 THAP9Q9H5L6 903 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 IFT122Q9HBG6 1241 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 TMOD2Q9NZR1 351 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 ADAMTS5Q9UNA0 930 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 SLC4A7Q9Y6M7 1214 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 NDUFB9Q9Y6M9 179 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 MYPNQ86TC9 1320 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 B4DLN1 442 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 O00370 1275 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 PDE2AO00408 941 aaPredicted RBP5.72□□□□□ -1.49
USP28-213ENST00000544967 FGAP02671 866 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 CHGBP05060 677 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 DRD4P21917 467 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 HOXD11P31277 338 aaPredicted RBP5.72□□□□□ -1.49
USP28-213ENST00000544967 GJA5P36382 358 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 MLLT3P42568 568 aaPredicted RBP5.72□□□□□ -1.49
USP28-213ENST00000544967 PSMC4P43686 418 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 PPP2R2AP63151 447 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 ZBED6P86452 979 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 SIM2Q14190 667 aaPredicted RBP5.72□□□□□ -1.49
USP28-213ENST00000544967 KRT31Q15323 416 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 SPDYAQ5MJ70 313 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 MAP1SQ66K74 1059 aaPredicted RBP5.72□□□□□ -1.49
USP28-213ENST00000544967 SPATA21Q7Z572 469 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 NCAPG2Q86XI2 1143 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 CCDC197Q8NCU1 140 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 ZNF507Q8TCN5 953 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 TBC1D31Q96DN5 1066 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 WNK4Q96J92 1243 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 TMEM87BQ96K49 555 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 CCDC17Q96LX7 622 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP5.72□□□□□ -1.49
USP28-213ENST00000544967 LUC7L2Q9Y383 392 aaKnown RBP5.72□□□□□ -1.49
USP28-213ENST00000544967 LRRC42Q9Y546 428 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 EME2A4GXA9 379 aaPredicted RBP5.72□□□□□ -1.49
USP28-213ENST00000544967 E7EVH7 732 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 H0YGN5 161 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 GCOM1H8Y6P7 765 aaPredicted RBP5.72□□□□□ -1.49
USP28-213ENST00000544967 TRAF5O00463 557 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 CXCL11O14625 94 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 CPLX1O14810 134 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 IDH1O75874 414 aaKnown RBP5.72□□□□□ -1.49
USP28-213ENST00000544967 ANP32DO95626 131 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 MYZAPP0CAP1 466 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 SNHG28P0DPA3 235 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 CD151P48509 253 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 DNM2P50570 870 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 KIF5AQ12840 1032 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 TMED1Q13445 227 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 COBLL1Q53SF7 1204 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 TCP11X2Q5H9J9 407 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 ARMC3Q5W041 872 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 SPRYD7Q5W111 196 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 KRT40Q6A162 431 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 C8orf74Q6P047 294 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 SGMS1Q86VZ5 419 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 SIAH1Q8IUQ4 282 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 ARHGAP18Q8N392 663 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 GMCL1P1Q8NEA9 526 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 NCOA7Q8NI08 942 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 FAM81AQ8TBF8 368 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 SCLT1Q96NL6 688 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 SLF1Q9BQI6 1058 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 FAM192AQ9GZU8 254 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 ISCUQ9H1K1 167 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 SH2D4AQ9H788 454 aa5.72□□□□□ -1.49
USP28-213ENST00000544967 GUCA1BQ9UMX6 200 aa5.72□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms