RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 NAALADL2Q58DX5 795 aa12.91□□□□□ -0.34
YBX3-213ENST00000542641 MARCH8Q5T0T0 291 aa12.91□□□□□ -0.34
YBX3-213ENST00000542641 C1orf53Q5VUE5 145 aa12.91□□□□□ -0.34
YBX3-213ENST00000542641 GDF6Q6KF10 455 aaPredicted RBP12.91□□□□□ -0.34
YBX3-213ENST00000542641 PADI6Q6TGC4 694 aa12.91□□□□□ -0.34
YBX3-213ENST00000542641 SV2BQ7L1I2 683 aa12.91□□□□□ -0.34
YBX3-213ENST00000542641 UBE2Q1Q7Z7E8 422 aa12.91□□□□□ -0.34
YBX3-213ENST00000542641 EXOC8Q8IYI6 725 aa12.91□□□□□ -0.34
YBX3-213ENST00000542641 SYT2Q8N9I0 419 aaPredicted RBP12.91□□□□□ -0.34
YBX3-213ENST00000542641 SLC7A3Q8WY07 619 aa12.91□□□□□ -0.34
YBX3-213ENST00000542641 CUEDC2Q9H467 287 aa12.91□□□□□ -0.34
YBX3-213ENST00000542641 BLOC1S4Q9NUP1 217 aa12.91□□□□□ -0.34
YBX3-213ENST00000542641 TUBE1Q9UJT0 475 aa12.91□□□□□ -0.34
YBX3-213ENST00000542641 NOD1Q9Y239 953 aa12.91□□□□□ -0.34
YBX3-213ENST00000542641 MROH7Q68CQ1 1323 aa12.9□□□□□ -0.34
YBX3-213ENST00000542641 DNAH12Q6ZR08 3092 aa12.9□□□□□ -0.34
YBX3-213ENST00000542641 TREHO43280 583 aa12.9□□□□□ -0.34
YBX3-213ENST00000542641 B4GALT4O60513 344 aa12.9□□□□□ -0.34
YBX3-213ENST00000542641 USO1O60763 962 aaKnown RBP12.9□□□□□ -0.34
YBX3-213ENST00000542641 PQBP1O60828 265 aaKnown RBP12.9□□□□□ -0.34
YBX3-213ENST00000542641 MAFO75444 373 aaPredicted RBP12.9□□□□□ -0.34
YBX3-213ENST00000542641 DGAT1O75907 488 aa12.9□□□□□ -0.34
YBX3-213ENST00000542641 LIG1P18858 919 aa12.9□□□□□ -0.34
YBX3-213ENST00000542641 RFC5P40937 340 aa12.9□□□□□ -0.34
YBX3-213ENST00000542641 ADAM17P78536 824 aa12.9□□□□□ -0.34
YBX3-213ENST00000542641 FAM160A1Q05DH4 1040 aa12.9□□□□□ -0.34
YBX3-213ENST00000542641 SNX17Q15036 470 aa12.9□□□□□ -0.34
YBX3-213ENST00000542641 LONRF3Q496Y0 759 aa12.9□□□□□ -0.34
YBX3-213ENST00000542641 MTHFD1LQ6UB35 978 aa12.9□□□□□ -0.34
YBX3-213ENST00000542641 CEP57L1Q8IYX8 460 aa12.9□□□□□ -0.34
YBX3-213ENST00000542641 FMR1NBQ8N0W7 255 aaPredicted RBP12.9□□□□□ -0.34
YBX3-213ENST00000542641 METTL13Q8N6R0 699 aa12.9□□□□□ -0.34
YBX3-213ENST00000542641 RETREG2Q8NC44 543 aa12.9□□□□□ -0.34
YBX3-213ENST00000542641 RNF25Q96BH1 459 aaPredicted RBP12.9□□□□□ -0.34
YBX3-213ENST00000542641 ZBTB10Q96DT7 871 aa12.9□□□□□ -0.34
YBX3-213ENST00000542641 CEP89Q96ST8 783 aa12.9□□□□□ -0.34
YBX3-213ENST00000542641 JPH2Q9BR39 696 aaPredicted RBP12.9□□□□□ -0.34
YBX3-213ENST00000542641 TRPV6Q9H1D0 765 aa12.9□□□□□ -0.34
YBX3-213ENST00000542641 SUGCTQ9HAC7 445 aa12.9□□□□□ -0.34
YBX3-213ENST00000542641 BMP2KQ9NSY1 1161 aaPredicted RBP12.9□□□□□ -0.34
YBX3-213ENST00000542641 TRMT13Q9NUP7 481 aaKnown RBP12.9□□□□□ -0.34
YBX3-213ENST00000542641 USP25Q9UHP3 1055 aa12.9□□□□□ -0.34
YBX3-213ENST00000542641 SERTAD1Q9UHV2 236 aa12.9□□□□□ -0.34
YBX3-213ENST00000542641 ATP11BQ9Y2G3 1177 aa12.9□□□□□ -0.34
YBX3-213ENST00000542641 SCN10AQ9Y5Y9 1956 aa12.9□□□□□ -0.34
YBX3-213ENST00000542641 MYH9P35579 1960 aaKnown RBP12.89□□□□□ -0.35
YBX3-213ENST00000542641 MBLAC1A4D2B0 266 aaPredicted RBP12.89□□□□□ -0.35
YBX3-213ENST00000542641 DCDC2CA8MYV0 355 aa12.89□□□□□ -0.35
YBX3-213ENST00000542641 RIOK3O14730 519 aaKnown RBP12.89□□□□□ -0.35
YBX3-213ENST00000542641 TLR3O15455 904 aaKnown RBP12.89□□□□□ -0.35
YBX3-213ENST00000542641 NR1I2O75469 434 aa12.89□□□□□ -0.35
YBX3-213ENST00000542641 C22orf31O95567 290 aa12.89□□□□□ -0.35
YBX3-213ENST00000542641 SLFN14P0C7P3 912 aa12.89□□□□□ -0.35
YBX3-213ENST00000542641 CYP2C9P11712 490 aa12.89□□□□□ -0.35
YBX3-213ENST00000542641 TMOD1P28289 359 aa12.89□□□□□ -0.35
YBX3-213ENST00000542641 RTP1P59025 263 aa12.89□□□□□ -0.35
YBX3-213ENST00000542641 SNW1Q13573 536 aaKnown RBP12.89□□□□□ -0.35
YBX3-213ENST00000542641 LRRC26Q2I0M4 334 aa12.89□□□□□ -0.35
YBX3-213ENST00000542641 TRIM60Q495X7 471 aa12.89□□□□□ -0.35
YBX3-213ENST00000542641 RINT1Q6NUQ1 792 aa12.89□□□□□ -0.35
YBX3-213ENST00000542641 EFCAB12Q6NXP0 572 aa12.89□□□□□ -0.35
YBX3-213ENST00000542641 ANKRD33Q7Z3H0 272 aa12.89□□□□□ -0.35
YBX3-213ENST00000542641 GPBP1Q86WP2 473 aa12.89□□□□□ -0.35
YBX3-213ENST00000542641 FAM126BQ8IXS8 530 aa12.89□□□□□ -0.35
YBX3-213ENST00000542641 CNNM3Q8NE01 707 aa12.89□□□□□ -0.35
YBX3-213ENST00000542641 ENGASEQ8NFI3 743 aa12.89□□□□□ -0.35
YBX3-213ENST00000542641 TOX2Q96NM4 488 aa12.89□□□□□ -0.35
YBX3-213ENST00000542641 DHX33Q9H6R0 707 aaKnown RBP12.89□□□□□ -0.35
YBX3-213ENST00000542641 MAGEF1Q9HAY2 307 aa12.89□□□□□ -0.35
YBX3-213ENST00000542641 ATP6V0A4Q9HBG4 840 aa12.89□□□□□ -0.35
YBX3-213ENST00000542641 PCDHB8Q9UN66 801 aa12.89□□□□□ -0.35
YBX3-213ENST00000542641 PCDHA2Q9Y5H9 948 aa12.89□□□□□ -0.35
YBX3-213ENST00000542641 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.88□□□□□ -0.35
YBX3-213ENST00000542641 IGKV6-21A0A0C4DH24 114 aa12.88□□□□□ -0.35
YBX3-213ENST00000542641 SMIM35A0A1B0GVV1 85 aa12.88□□□□□ -0.35
YBX3-213ENST00000542641 ACTN4O43707 911 aaKnown RBP12.88□□□□□ -0.35
YBX3-213ENST00000542641 KRT18P05783 430 aaKnown RBP12.88□□□□□ -0.35
YBX3-213ENST00000542641 CYP11B2P19099 503 aa12.88□□□□□ -0.35
YBX3-213ENST00000542641 DNM2P50570 870 aa12.88□□□□□ -0.35
YBX3-213ENST00000542641 AMPD3Q01432 767 aa12.88□□□□□ -0.35
YBX3-213ENST00000542641 TLE2Q04725 743 aa12.88□□□□□ -0.35
YBX3-213ENST00000542641 RAD51AP2Q09MP3 1159 aa12.88□□□□□ -0.35
YBX3-213ENST00000542641 EMC2Q15006 297 aa12.88□□□□□ -0.35
YBX3-213ENST00000542641 ARSHQ5FYA8 562 aa12.88□□□□□ -0.35
YBX3-213ENST00000542641 TAF2Q6P1X5 1199 aa12.88□□□□□ -0.35
YBX3-213ENST00000542641 RUFY4Q6ZNE9 571 aa12.88□□□□□ -0.35
YBX3-213ENST00000542641 KRBA2Q6ZNG9 492 aa12.88□□□□□ -0.35
YBX3-213ENST00000542641 C1orf186Q6ZWK4 172 aa12.88□□□□□ -0.35
YBX3-213ENST00000542641 MAEAQ7L5Y9 396 aa12.88□□□□□ -0.35
YBX3-213ENST00000542641 SERINC5Q86VE9 423 aa12.88□□□□□ -0.35
YBX3-213ENST00000542641 LRRC71Q8N4P6 559 aa12.88□□□□□ -0.35
YBX3-213ENST00000542641 MCPH1Q8NEM0 835 aa12.88□□□□□ -0.35
YBX3-213ENST00000542641 STAMQ92783 540 aa12.88□□□□□ -0.35
YBX3-213ENST00000542641 CCDC34Q96HJ3 373 aa12.88□□□□□ -0.35
YBX3-213ENST00000542641 MTRQ99707 1265 aa12.88□□□□□ -0.35
YBX3-213ENST00000542641 RUSC1Q9BVN2 902 aa12.88□□□□□ -0.35
YBX3-213ENST00000542641 LRRC27Q9C0I9 530 aa12.88□□□□□ -0.35
YBX3-213ENST00000542641 FAM49AQ9H0Q0 323 aaPredicted RBP12.88□□□□□ -0.35
YBX3-213ENST00000542641 TNMDQ9H2S6 317 aa12.88□□□□□ -0.35
YBX3-213ENST00000542641 PDLIM7Q9NR12 457 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms