RNA–Protein interactions for RNA: ENST00000416651.5

NIF3L1-206, Transcript of NGG1 interacting factor 3 like 1, human

TSL 2 BASIC

Gene NIF3L1, Length 967 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NIF3L1-206	ENST00000416651	TRIM66	O15016	1216 aa		10.1	□□□□□ -0.79
NIF3L1-206	ENST00000416651	NARS	O43776	548 aa	Known RBP	10.1	□□□□□ -0.79
NIF3L1-206	ENST00000416651	EIF3J	O75822	258 aa	Known RBP	10.1	□□□□□ -0.79
NIF3L1-206	ENST00000416651	VSIG8	P0DPA2	414 aa		10.1	□□□□□ -0.79
NIF3L1-206	ENST00000416651	AOC1	P19801	751 aa		10.1	□□□□□ -0.79
NIF3L1-206	ENST00000416651	ATXN1	P54253	815 aa	Known RBP	10.1	□□□□□ -0.79
NIF3L1-206	ENST00000416651	ARHGAP4	P98171	946 aa		10.1	□□□□□ -0.79
NIF3L1-206	ENST00000416651	NNT	Q13423	1086 aa		10.1	□□□□□ -0.79
NIF3L1-206	ENST00000416651	LINC01559	Q495D7	138 aa		10.1	□□□□□ -0.79
NIF3L1-206	ENST00000416651	FBXO47	Q5MNV8	452 aa		10.1	□□□□□ -0.79
NIF3L1-206	ENST00000416651	ARHGEF16	Q5VV41	709 aa		10.1	□□□□□ -0.79
NIF3L1-206	ENST00000416651	ZSCAN25	Q6NSZ9	544 aa		10.1	□□□□□ -0.79
NIF3L1-206	ENST00000416651	UBALD2	Q8IYN6	164 aa		10.1	□□□□□ -0.79
NIF3L1-206	ENST00000416651	CMTR2	Q8IYT2	770 aa	Known RBP	10.1	□□□□□ -0.79
NIF3L1-206	ENST00000416651	ZNF287	Q9HBT7	754 aa		10.1	□□□□□ -0.79
NIF3L1-206	ENST00000416651	ERVK-5	Q9HDB9	667 aa		10.1	□□□□□ -0.79
NIF3L1-206	ENST00000416651	WDR19	Q8NEZ3	1342 aa		10.09	□□□□□ -0.79
NIF3L1-206	ENST00000416651	MGEA5	O60502	916 aa		10.09	□□□□□ -0.79
NIF3L1-206	ENST00000416651	PBX3	P40426	434 aa		10.09	□□□□□ -0.79
NIF3L1-206	ENST00000416651	TMEM62	Q0P6H9	643 aa		10.09	□□□□□ -0.79
NIF3L1-206	ENST00000416651	SEMA3F	Q13275	785 aa		10.09	□□□□□ -0.79
NIF3L1-206	ENST00000416651	CDC37	Q16543	378 aa	Predicted RBP	10.09	□□□□□ -0.79
NIF3L1-206	ENST00000416651	RRP12	Q5JTH9	1297 aa	Known RBP	10.09	□□□□□ -0.79
NIF3L1-206	ENST00000416651	FAM102B	Q5T8I3	360 aa		10.09	□□□□□ -0.79
NIF3L1-206	ENST00000416651	UTP14C	Q5TAP6	766 aa	Known RBP	10.09	□□□□□ -0.79
NIF3L1-206	ENST00000416651	TMEM184A	Q6ZMB5	413 aa		10.09	□□□□□ -0.79
NIF3L1-206	ENST00000416651	FTSJ3	Q8IY81	847 aa	Known RBP	10.09	□□□□□ -0.79
NIF3L1-206	ENST00000416651	RGS22	Q8NE09	1264 aa		10.09	□□□□□ -0.79
NIF3L1-206	ENST00000416651	DNAJB3	Q8WWF6	145 aa		10.09	□□□□□ -0.79
NIF3L1-206	ENST00000416651	PPP2R3C	Q969Q6	453 aa		10.09	□□□□□ -0.79
NIF3L1-206	ENST00000416651	MPHOSPH6	Q99547	160 aa	Known RBP	10.09	□□□□□ -0.79
NIF3L1-206	ENST00000416651	HINFP	Q9BQA5	517 aa		10.09	□□□□□ -0.79
NIF3L1-206	ENST00000416651	PDCD2L	Q9BRP1	358 aa		10.09	□□□□□ -0.79
NIF3L1-206	ENST00000416651	NAPB	Q9H115	298 aa		10.09	□□□□□ -0.79
NIF3L1-206	ENST00000416651	TMX1	Q9H3N1	280 aa		10.09	□□□□□ -0.79
NIF3L1-206	ENST00000416651	CDY2A	Q9Y6F7	541 aa		10.09	□□□□□ -0.79
NIF3L1-206	ENST00000416651	FNDC1	Q4ZHG4	1894 aa	Predicted RBP	10.08	□□□□□ -0.8
NIF3L1-206	ENST00000416651	SPTLC1	O15269	473 aa		10.08	□□□□□ -0.8
NIF3L1-206	ENST00000416651	FGF18	O76093	207 aa		10.08	□□□□□ -0.8
NIF3L1-206	ENST00000416651	CFB	P00751	764 aa		10.08	□□□□□ -0.8
NIF3L1-206	ENST00000416651	SNHG28	P0DPA3	235 aa		10.08	□□□□□ -0.8
NIF3L1-206	ENST00000416651	TOP1	P11387	765 aa	Known RBP	10.08	□□□□□ -0.8
NIF3L1-206	ENST00000416651	HOXA13	P31271	388 aa	Predicted RBP	10.08	□□□□□ -0.8
NIF3L1-206	ENST00000416651	SP4	Q02446	784 aa		10.08	□□□□□ -0.8
NIF3L1-206	ENST00000416651	KCNMA1	Q12791	1236 aa		10.08	□□□□□ -0.8
NIF3L1-206	ENST00000416651	HSP90AB4P	Q58FF6	505 aa		10.08	□□□□□ -0.8
NIF3L1-206	ENST00000416651	BAP1	Q92560	729 aa		10.08	□□□□□ -0.8
NIF3L1-206	ENST00000416651	IWS1	Q96ST2	819 aa		10.08	□□□□□ -0.8
NIF3L1-206	ENST00000416651	ZKSCAN3	Q9BRR0	538 aa		10.08	□□□□□ -0.8
NIF3L1-206	ENST00000416651	TMEM260	Q9NX78	707 aa		10.08	□□□□□ -0.8
NIF3L1-206	ENST00000416651	CACNA1I	Q9P0X4	2223 aa		10.07	□□□□□ -0.8
NIF3L1-206	ENST00000416651	KRBA1	A5PL33	1030 aa		10.07	□□□□□ -0.8
NIF3L1-206	ENST00000416651		B4DLN1	442 aa		10.07	□□□□□ -0.8
NIF3L1-206	ENST00000416651	PPP1R11	O60927	126 aa	Predicted RBP	10.07	□□□□□ -0.8
NIF3L1-206	ENST00000416651	CAND2	O75155	1236 aa		10.07	□□□□□ -0.8
NIF3L1-206	ENST00000416651	LRRN2	O75325	713 aa		10.07	□□□□□ -0.8
NIF3L1-206	ENST00000416651	TIMP2	P16035	220 aa		10.07	□□□□□ -0.8
NIF3L1-206	ENST00000416651	MRPL12	P52815	198 aa	Known RBP	10.07	□□□□□ -0.8
NIF3L1-206	ENST00000416651	TMEM266	Q2M3C6	531 aa		10.07	□□□□□ -0.8
NIF3L1-206	ENST00000416651	QRICH1	Q2TAL8	776 aa		10.07	□□□□□ -0.8
NIF3L1-206	ENST00000416651	NAALADL2	Q58DX5	795 aa		10.07	□□□□□ -0.8
NIF3L1-206	ENST00000416651	MARCH8	Q5T0T0	291 aa		10.07	□□□□□ -0.8
NIF3L1-206	ENST00000416651	RARS2	Q5T160	578 aa	Known RBP	10.07	□□□□□ -0.8
NIF3L1-206	ENST00000416651	CYFIP1	Q7L576	1253 aa		10.07	□□□□□ -0.8
NIF3L1-206	ENST00000416651	ADGRF4	Q8IZF3	695 aa		10.07	□□□□□ -0.8
NIF3L1-206	ENST00000416651	SIX5	Q8N196	739 aa		10.07	□□□□□ -0.8
NIF3L1-206	ENST00000416651	KCTD17	Q8N5Z5	321 aa		10.07	□□□□□ -0.8
NIF3L1-206	ENST00000416651	COLGALT1	Q8NBJ5	622 aa		10.07	□□□□□ -0.8
NIF3L1-206	ENST00000416651	SUMF1	Q8NBK3	374 aa		10.07	□□□□□ -0.8
NIF3L1-206	ENST00000416651	ST13P5	Q8NFI4	369 aa	Predicted RBP	10.07	□□□□□ -0.8
NIF3L1-206	ENST00000416651	GPR20	Q99678	358 aa		10.07	□□□□□ -0.8
NIF3L1-206	ENST00000416651	CWH43	Q9H720	699 aa		10.07	□□□□□ -0.8
NIF3L1-206	ENST00000416651	MLXIP	Q9HAP2	919 aa		10.07	□□□□□ -0.8
NIF3L1-206	ENST00000416651	VAT1L	Q9HCJ6	419 aa		10.07	□□□□□ -0.8
NIF3L1-206	ENST00000416651	TYW1	Q9NV66	732 aa	Known RBP	10.07	□□□□□ -0.8
NIF3L1-206	ENST00000416651	FANCM	Q8IYD8	2048 aa		10.07	□□□□□ -0.8
NIF3L1-206	ENST00000416651	TBKBP1	A7MCY6	615 aa		10.06	□□□□□ -0.8
NIF3L1-206	ENST00000416651	DCN	P07585	359 aa	Known RBP	10.06	□□□□□ -0.8
NIF3L1-206	ENST00000416651	GNAT2	P19087	354 aa		10.06	□□□□□ -0.8
NIF3L1-206	ENST00000416651	VARS	P26640	1264 aa	Known RBP	10.06	□□□□□ -0.8
NIF3L1-206	ENST00000416651	WDR4	P57081	412 aa	Known RBP	10.06	□□□□□ -0.8
NIF3L1-206	ENST00000416651	COL9A3	Q14050	684 aa	Predicted RBP	10.06	□□□□□ -0.8
NIF3L1-206	ENST00000416651	PGM5	Q15124	567 aa		10.06	□□□□□ -0.8
NIF3L1-206	ENST00000416651	SPECC1	Q5M775	1068 aa		10.06	□□□□□ -0.8
NIF3L1-206	ENST00000416651	SPOUT1	Q5T280	376 aa	Known RBP	10.06	□□□□□ -0.8
NIF3L1-206	ENST00000416651	LYPD8	Q6UX82	237 aa		10.06	□□□□□ -0.8
NIF3L1-206	ENST00000416651	VSIG10L	Q86VR7	867 aa		10.06	□□□□□ -0.8
NIF3L1-206	ENST00000416651	NPAS4	Q8IUM7	802 aa		10.06	□□□□□ -0.8
NIF3L1-206	ENST00000416651	ZNF511	Q8NB15	262 aa		10.06	□□□□□ -0.8
NIF3L1-206	ENST00000416651	RSAD2	Q8WXG1	361 aa		10.06	□□□□□ -0.8
NIF3L1-206	ENST00000416651	FAM49A	Q9H0Q0	323 aa	Predicted RBP	10.06	□□□□□ -0.8
NIF3L1-206	ENST00000416651	TOMM22	Q9NS69	142 aa		10.06	□□□□□ -0.8
NIF3L1-206	ENST00000416651	PADI3	Q9ULW8	664 aa		10.06	□□□□□ -0.8
NIF3L1-206	ENST00000416651	NR2E1	Q9Y466	385 aa		10.06	□□□□□ -0.8
NIF3L1-206	ENST00000416651	HCFC2	Q9Y5Z7	792 aa		10.06	□□□□□ -0.8
NIF3L1-206	ENST00000416651	ABCB11	O95342	1321 aa		10.06	□□□□□ -0.8
NIF3L1-206	ENST00000416651	FASN	P49327	2511 aa	Known RBP	10.05	□□□□□ -0.8
NIF3L1-206	ENST00000416651	PKD1L2	Q7Z442	2459 aa		10.05	□□□□□ -0.8
NIF3L1-206	ENST00000416651	ORC4	O43929	436 aa		10.05	□□□□□ -0.8
NIF3L1-206	ENST00000416651	RAB11FIP3	O75154	756 aa		10.05	□□□□□ -0.8

Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms