RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 UBE4BO95155 1302 aa15.18■□□□□ 0.02
PTPRF-202ENST00000372405 CETN3O15182 167 aa15.18■□□□□ 0.02
PTPRF-202ENST00000372405 CLIC2O15247 247 aa15.18■□□□□ 0.02
PTPRF-202ENST00000372405 CALUO43852 315 aaPredicted RBP15.18■□□□□ 0.02
PTPRF-202ENST00000372405 AKAP3O75969 853 aa15.18■□□□□ 0.02
PTPRF-202ENST00000372405 GGPS1O95749 300 aa15.18■□□□□ 0.02
PTPRF-202ENST00000372405 GCLCP48506 637 aaPredicted RBP15.18■□□□□ 0.02
PTPRF-202ENST00000372405 CASP4P49662 377 aa15.18■□□□□ 0.02
PTPRF-202ENST00000372405 SOX10P56693 466 aa15.18■□□□□ 0.02
PTPRF-202ENST00000372405 TRIM14Q14142 442 aa15.18■□□□□ 0.02
PTPRF-202ENST00000372405 TMEM63BQ5T3F8 832 aa15.18■□□□□ 0.02
PTPRF-202ENST00000372405 CNGA4Q8IV77 575 aa15.18■□□□□ 0.02
PTPRF-202ENST00000372405 CEP170P1Q96L14 293 aa15.18■□□□□ 0.02
PTPRF-202ENST00000372405 TIPINQ9BVW5 301 aa15.18■□□□□ 0.02
PTPRF-202ENST00000372405 ABHD10Q9NUJ1 306 aa15.18■□□□□ 0.02
PTPRF-202ENST00000372405 LARSQ9P2J5 1176 aaKnown RBP15.18■□□□□ 0.02
PTPRF-202ENST00000372405 K7ENM7 598 aa15.17■□□□□ 0.02
PTPRF-202ENST00000372405 ARHGAP6O43182 974 aa15.17■□□□□ 0.02
PTPRF-202ENST00000372405 GNA14O95837 355 aa15.17■□□□□ 0.02
PTPRF-202ENST00000372405 MAPTP10636 758 aaKnown RBP15.17■□□□□ 0.02
PTPRF-202ENST00000372405 ADORA2AP29274 412 aa15.17■□□□□ 0.02
PTPRF-202ENST00000372405 CCNA1P78396 465 aa15.17■□□□□ 0.02
PTPRF-202ENST00000372405 NEDD9Q14511 834 aa15.17■□□□□ 0.02
PTPRF-202ENST00000372405 ZNF792Q3KQV3 632 aa15.17■□□□□ 0.02
PTPRF-202ENST00000372405 OTUD6AQ7L8S5 288 aa15.17■□□□□ 0.02
PTPRF-202ENST00000372405 XPNPEP1Q9NQW7 623 aa15.17■□□□□ 0.02
PTPRF-202ENST00000372405 ZNF302Q9NR11 478 aa15.17■□□□□ 0.02
PTPRF-202ENST00000372405 SEPT9Q9UHD8 586 aaPredicted RBP15.17■□□□□ 0.02
PTPRF-202ENST00000372405 SOWAHDA6NJG2 315 aa15.16■□□□□ 0.02
PTPRF-202ENST00000372405 EPHB6O15197 1021 aa15.16■□□□□ 0.02
PTPRF-202ENST00000372405 NRDCO43847 1150 aa15.16■□□□□ 0.02
PTPRF-202ENST00000372405 DKC1O60832 514 aaKnown RBP eCLIP15.16■□□□□ 0.021e-7■■■■■ 32
PTPRF-202ENST00000372405 KRT9P35527 623 aa15.16■□□□□ 0.02
PTPRF-202ENST00000372405 MTF1Q14872 753 aa15.16■□□□□ 0.02
PTPRF-202ENST00000372405 NFIL3Q16649 462 aa15.16■□□□□ 0.02
PTPRF-202ENST00000372405 XKR3Q5GH77 459 aa15.16■□□□□ 0.02
PTPRF-202ENST00000372405 FKBP15Q5T1M5 1219 aa15.16■□□□□ 0.02
PTPRF-202ENST00000372405 FAM102BQ5T8I3 360 aa15.16■□□□□ 0.02
PTPRF-202ENST00000372405 CCDC62Q6P9F0 684 aa15.16■□□□□ 0.02
PTPRF-202ENST00000372405 METTL7BQ6UX53 244 aa15.16■□□□□ 0.02
PTPRF-202ENST00000372405 RASAL3Q86YV0 1011 aa15.16■□□□□ 0.02
PTPRF-202ENST00000372405 BSNDQ8WZ55 320 aa15.16■□□□□ 0.02
PTPRF-202ENST00000372405 DRC1Q96MC2 740 aa15.16■□□□□ 0.02
PTPRF-202ENST00000372405 CYP26B1Q9NR63 512 aa15.16■□□□□ 0.02
PTPRF-202ENST00000372405 AGPAT5Q9NUQ2 364 aa15.16■□□□□ 0.02
PTPRF-202ENST00000372405 CAPN11Q9UMQ6 739 aa15.16■□□□□ 0.02
PTPRF-202ENST00000372405 PCDHB13Q9Y5F0 798 aa15.16■□□□□ 0.02
PTPRF-202ENST00000372405 PEX3P56589 373 aa15.16■□□□□ 0.02
PTPRF-202ENST00000372405 KCNMA1Q12791 1236 aa15.16■□□□□ 0.02
PTPRF-202ENST00000372405 RAD9BQ6WBX8 426 aa15.16■□□□□ 0.02
PTPRF-202ENST00000372405 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.16■□□□□ 0.02
PTPRF-202ENST00000372405 TOGARAM2Q6ZUX3 1019 aa15.16■□□□□ 0.02
PTPRF-202ENST00000372405 ARMCX2Q7L311 632 aa15.16■□□□□ 0.02
PTPRF-202ENST00000372405 CCDC51Q96ER9 411 aa15.16■□□□□ 0.02
PTPRF-202ENST00000372405 C16orf45Q96MC5 204 aaPredicted RBP15.16■□□□□ 0.02
PTPRF-202ENST00000372405 CEP89Q96ST8 783 aa15.16■□□□□ 0.02
PTPRF-202ENST00000372405 PARK7Q99497 189 aaKnown RBP15.16■□□□□ 0.02
PTPRF-202ENST00000372405 MPHOSPH6Q99547 160 aaKnown RBP15.16■□□□□ 0.02
PTPRF-202ENST00000372405 ST6GALNAC4Q9H4F1 302 aa15.16■□□□□ 0.02
PTPRF-202ENST00000372405 PDGFCQ9NRA1 345 aa15.16■□□□□ 0.02
PTPRF-202ENST00000372405 AGPAT3Q9NRZ7 376 aa15.16■□□□□ 0.02
PTPRF-202ENST00000372405 DOCK3Q8IZD9 2030 aa15.15■□□□□ 0.02
PTPRF-202ENST00000372405 LOC102724159A0A0B4J2E5 919 aa15.15■□□□□ 0.02
PTPRF-202ENST00000372405 IGF2BP3O00425 579 aaKnown RBP eCLIP15.15■□□□□ 0.02
PTPRF-202ENST00000372405 OATP04181 439 aa15.15■□□□□ 0.02
PTPRF-202ENST00000372405 TPM1P09493 284 aa15.15■□□□□ 0.02
PTPRF-202ENST00000372405 NCKAP1LP55160 1127 aa15.15■□□□□ 0.02
PTPRF-202ENST00000372405 GTF2BQ00403 316 aa15.15■□□□□ 0.02
PTPRF-202ENST00000372405 PWP2Q15269 919 aaKnown RBP15.15■□□□□ 0.02
PTPRF-202ENST00000372405 HSDL1Q3SXM5 330 aa15.15■□□□□ 0.02
PTPRF-202ENST00000372405 NYAP1Q6ZVC0 841 aa15.15■□□□□ 0.02
PTPRF-202ENST00000372405 STXBP4Q6ZWJ1 553 aa15.15■□□□□ 0.02
PTPRF-202ENST00000372405 FRMD5Q7Z6J6 570 aa15.15■□□□□ 0.02
PTPRF-202ENST00000372405 COPS5Q92905 334 aa15.15■□□□□ 0.02
PTPRF-202ENST00000372405 BORCS6Q96GS4 357 aa15.15■□□□□ 0.02
PTPRF-202ENST00000372405 PPP1R13BQ96KQ4 1090 aa15.15■□□□□ 0.02
PTPRF-202ENST00000372405 DNAJC7Q99615 494 aa15.15■□□□□ 0.02
PTPRF-202ENST00000372405 GBP3Q9H0R5 595 aa15.15■□□□□ 0.02
PTPRF-202ENST00000372405 DMAC2Q9NW81 257 aa15.15■□□□□ 0.02
PTPRF-202ENST00000372405 TISP43B9A030 160 aa15.15■□□□□ 0.02
PTPRF-202ENST00000372405 SLC16A4O15374 487 aa15.15■□□□□ 0.02
PTPRF-202ENST00000372405 SLC16A3O15427 465 aaKnown RBP15.15■□□□□ 0.02
PTPRF-202ENST00000372405 DGAT1O75907 488 aa15.15■□□□□ 0.02
PTPRF-202ENST00000372405 TCF7P36402 384 aaPredicted RBP15.15■□□□□ 0.02
PTPRF-202ENST00000372405 NPTX2P47972 431 aa15.15■□□□□ 0.02
PTPRF-202ENST00000372405 FAM110CQ1W6H9 321 aa15.15■□□□□ 0.02
PTPRF-202ENST00000372405 MTERF2Q49AM1 385 aa15.15■□□□□ 0.02
PTPRF-202ENST00000372405 FIGNQ5HY92 759 aa15.15■□□□□ 0.02
PTPRF-202ENST00000372405 CELF3Q5SZQ8 465 aaKnown RBP15.15■□□□□ 0.02
PTPRF-202ENST00000372405 HAUS6Q7Z4H7 955 aa15.15■□□□□ 0.02
PTPRF-202ENST00000372405 GPR142Q7Z601 462 aa15.15■□□□□ 0.02
PTPRF-202ENST00000372405 ABRAQ8N0Z2 381 aa15.15■□□□□ 0.02
PTPRF-202ENST00000372405 ADGRA2Q96PE1 1338 aa15.15■□□□□ 0.02
PTPRF-202ENST00000372405 KIFC3Q9BVG8 833 aa15.15■□□□□ 0.02
PTPRF-202ENST00000372405 UTP18Q9Y5J1 556 aaKnown RBP eCLIP15.15■□□□□ 0.02
PTPRF-202ENST00000372405 ADGRA3Q8IWK6 1321 aa15.14■□□□□ 0.01
PTPRF-202ENST00000372405 ASB14A6NK59 587 aa15.14■□□□□ 0.01
PTPRF-202ENST00000372405 TRIM21P19474 475 aaKnown RBP15.14■□□□□ 0.01
PTPRF-202ENST00000372405 RPL13P26373 211 aaKnown RBP15.14■□□□□ 0.01
PTPRF-202ENST00000372405 ZNF157P51786 506 aaPredicted RBP15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms