RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 EFCAB12Q6NXP0 572 aa20■□□□□ 0.79
HDDC3-201ENST00000330334 SLC24A5Q71RS6 500 aa20■□□□□ 0.79
HDDC3-201ENST00000330334 BANK1Q8NDB2 785 aa20■□□□□ 0.79
HDDC3-201ENST00000330334 P2RX5Q93086 422 aa20■□□□□ 0.79
HDDC3-201ENST00000330334 FAM20AQ96MK3 541 aa20■□□□□ 0.79
HDDC3-201ENST00000330334 MAP7D2Q96T17 732 aa20■□□□□ 0.79
HDDC3-201ENST00000330334 DDX25Q9UHL0 483 aaKnown RBP20■□□□□ 0.79
HDDC3-201ENST00000330334 MYH9P35579 1960 aaKnown RBP20■□□□□ 0.79
HDDC3-201ENST00000330334 CCDC194A0A1B0GVG4 234 aa19.99■□□□□ 0.79
HDDC3-201ENST00000330334 CHMP2AO43633 222 aa19.99■□□□□ 0.79
HDDC3-201ENST00000330334 VTNP04004 478 aa19.99■□□□□ 0.79
HDDC3-201ENST00000330334 FAM189BP81408 668 aa19.99■□□□□ 0.79
HDDC3-201ENST00000330334 CDC42EP1Q00587 391 aa19.99■□□□□ 0.79
HDDC3-201ENST00000330334 COL19A1Q14993 1142 aa19.99■□□□□ 0.79
HDDC3-201ENST00000330334 UGCGQ16739 394 aa19.99■□□□□ 0.79
HDDC3-201ENST00000330334 INF2Q27J81 1249 aa19.99■□□□□ 0.79
HDDC3-201ENST00000330334 XKR3Q5GH77 459 aa19.99■□□□□ 0.79
HDDC3-201ENST00000330334 TRMT1LQ7Z2T5 733 aaKnown RBP19.99■□□□□ 0.79
HDDC3-201ENST00000330334 MIER3Q7Z3K6 550 aa19.99■□□□□ 0.79
HDDC3-201ENST00000330334 NAP1L4Q99733 375 aaKnown RBP19.99■□□□□ 0.79
HDDC3-201ENST00000330334 ADAM2Q99965 735 aa19.99■□□□□ 0.79
HDDC3-201ENST00000330334 ADAMTS10Q9H324 1103 aa19.99■□□□□ 0.79
HDDC3-201ENST00000330334 UBE2ZQ9H832 354 aaPredicted RBP19.99■□□□□ 0.79
HDDC3-201ENST00000330334 ORC3Q9UBD5 711 aaPredicted RBP19.99■□□□□ 0.79
HDDC3-201ENST00000330334 PCDHB7Q9Y5E2 793 aa19.99■□□□□ 0.79
HDDC3-201ENST00000330334 DENND3A2RUS2 1198 aa19.98■□□□□ 0.79
HDDC3-201ENST00000330334 C9IYK1 514 aa19.98■□□□□ 0.79
HDDC3-201ENST00000330334 NCK2O43639 380 aa19.98■□□□□ 0.79
HDDC3-201ENST00000330334 EIF4BP23588 611 aaKnown RBP19.98■□□□□ 0.79
HDDC3-201ENST00000330334 NLRP11P59045 1033 aaKnown RBP19.98■□□□□ 0.79
HDDC3-201ENST00000330334 LEXMQ3ZCV2 418 aa19.98■□□□□ 0.79
HDDC3-201ENST00000330334 NEK8Q86SG6 692 aa19.98■□□□□ 0.79
HDDC3-201ENST00000330334 FAM228AQ86W67 206 aa19.98■□□□□ 0.79
HDDC3-201ENST00000330334 GJA10Q969M2 543 aa19.98■□□□□ 0.79
HDDC3-201ENST00000330334 OSMRQ99650 979 aa19.98■□□□□ 0.79
HDDC3-201ENST00000330334 NSUN3Q9H649 340 aaKnown RBP19.98■□□□□ 0.79
HDDC3-201ENST00000330334 KCNMB3Q9NPA1 279 aa19.98■□□□□ 0.79
HDDC3-201ENST00000330334 LRFN2Q9ULH4 789 aa19.98■□□□□ 0.79
HDDC3-201ENST00000330334 RALGAPA2Q2PPJ7 1873 aa19.97■□□□□ 0.79
HDDC3-201ENST00000330334 TBX3O15119 743 aa19.97■□□□□ 0.79
HDDC3-201ENST00000330334 MGEA5O60502 916 aa19.97■□□□□ 0.79
HDDC3-201ENST00000330334 STBD1O95210 358 aa19.97■□□□□ 0.79
HDDC3-201ENST00000330334 CLCN3P51790 818 aa19.97■□□□□ 0.79
HDDC3-201ENST00000330334 TBC1D8BQ0IIM8 1120 aa19.97■□□□□ 0.79
HDDC3-201ENST00000330334 PPP2R5CQ13362 524 aa19.97■□□□□ 0.79
HDDC3-201ENST00000330334 DSC3Q14574 896 aa19.97■□□□□ 0.79
HDDC3-201ENST00000330334 ME3Q16798 604 aa19.97■□□□□ 0.79
HDDC3-201ENST00000330334 LETM2Q2VYF4 491 aa19.97■□□□□ 0.79
HDDC3-201ENST00000330334 GTF3C6Q969F1 213 aa19.97■□□□□ 0.79
HDDC3-201ENST00000330334 CEP89Q96ST8 783 aa19.97■□□□□ 0.79
HDDC3-201ENST00000330334 ELAC1Q9H777 363 aaKnown RBP19.97■□□□□ 0.79
HDDC3-201ENST00000330334 PLAGL2Q9UPG8 496 aa19.97■□□□□ 0.79
HDDC3-201ENST00000330334 AKT3Q9Y243 479 aa19.97■□□□□ 0.79
HDDC3-201ENST00000330334 MRPL42Q9Y6G3 142 aaKnown RBP19.97■□□□□ 0.79
HDDC3-201ENST00000330334 EVPLQ92817 2033 aa19.97■□□□□ 0.79
HDDC3-201ENST00000330334 IGKV6-21A0A0C4DH24 114 aa19.96■□□□□ 0.79
HDDC3-201ENST00000330334 SLC37A4O43826 429 aa19.96■□□□□ 0.79
HDDC3-201ENST00000330334 FDPSP14324 419 aaKnown RBP19.96■□□□□ 0.79
HDDC3-201ENST00000330334 PSMC5P62195 406 aa19.96■□□□□ 0.79
HDDC3-201ENST00000330334 LRRC71Q8N4P6 559 aa19.96■□□□□ 0.79
HDDC3-201ENST00000330334 NEK9Q8TD19 979 aa19.96■□□□□ 0.79
HDDC3-201ENST00000330334 PABPC5Q96DU9 382 aaKnown RBP19.96■□□□□ 0.79
HDDC3-201ENST00000330334 GRM6O15303 877 aa19.95■□□□□ 0.78
HDDC3-201ENST00000330334 MMP1P03956 469 aa19.95■□□□□ 0.78
HDDC3-201ENST00000330334 GPC3P51654 580 aa19.95■□□□□ 0.78
HDDC3-201ENST00000330334 NEK4P51957 841 aa19.95■□□□□ 0.78
HDDC3-201ENST00000330334 PUS10Q3MIT2 529 aaKnown RBP19.95■□□□□ 0.78
HDDC3-201ENST00000330334 TCEAL5Q5H9L2 206 aa19.95■□□□□ 0.78
HDDC3-201ENST00000330334 OXER1Q8TDS5 423 aa19.95■□□□□ 0.78
HDDC3-201ENST00000330334 GJB4Q9NTQ9 266 aa19.95■□□□□ 0.78
HDDC3-201ENST00000330334 TMEM161AQ9NX61 479 aa19.95■□□□□ 0.78
HDDC3-201ENST00000330334 VAV3Q9UKW4 847 aa19.95■□□□□ 0.78
HDDC3-201ENST00000330334 LOXHD1Q8IVV2 1947 aa19.94■□□□□ 0.78
HDDC3-201ENST00000330334 DKC1O60832 514 aaKnown RBP eCLIP19.94■□□□□ 0.78
HDDC3-201ENST00000330334 CENPBP07199 599 aaPredicted RBP19.94■□□□□ 0.78
HDDC3-201ENST00000330334 DARSP14868 501 aaKnown RBP19.94■□□□□ 0.78
HDDC3-201ENST00000330334 DNM2P50570 870 aa19.94■□□□□ 0.78
HDDC3-201ENST00000330334 PIK3AP1Q6ZUJ8 805 aa19.94■□□□□ 0.78
HDDC3-201ENST00000330334 NECAB1Q8N987 351 aa19.94■□□□□ 0.78
HDDC3-201ENST00000330334 NECAB3Q96P71 396 aaPredicted RBP19.94■□□□□ 0.78
HDDC3-201ENST00000330334 PPP1R16BQ96T49 567 aa19.94■□□□□ 0.78
HDDC3-201ENST00000330334 BRMS1Q9HCU9 246 aa19.94■□□□□ 0.78
HDDC3-201ENST00000330334 PPME1Q9Y570 386 aa19.94■□□□□ 0.78
HDDC3-201ENST00000330334 NLRC5Q86WI3 1866 aa19.94■□□□□ 0.78
HDDC3-201ENST00000330334 CCNT1O60563 726 aaKnown RBP19.93■□□□□ 0.78
HDDC3-201ENST00000330334 MAFO75444 373 aaPredicted RBP19.93■□□□□ 0.78
HDDC3-201ENST00000330334 P4HBP07237 508 aaKnown RBP19.93■□□□□ 0.78
HDDC3-201ENST00000330334 KCNA5P22460 613 aa19.93■□□□□ 0.78
HDDC3-201ENST00000330334 KRT2P35908 639 aa19.93■□□□□ 0.78
HDDC3-201ENST00000330334 QARSP47897 775 aaKnown RBP19.93■□□□□ 0.78
HDDC3-201ENST00000330334 CAMK1Q14012 370 aa19.93■□□□□ 0.78
HDDC3-201ENST00000330334 CTC1Q2NKJ3 1217 aa19.93■□□□□ 0.78
HDDC3-201ENST00000330334 EXOC8Q8IYI6 725 aa19.93■□□□□ 0.78
HDDC3-201ENST00000330334 NSUN7Q8NE18 718 aaKnown RBP19.93■□□□□ 0.78
HDDC3-201ENST00000330334 GADD45GIP1Q8TAE8 222 aaPredicted RBP19.93■□□□□ 0.78
HDDC3-201ENST00000330334 SPPL3Q8TCT6 385 aa19.93■□□□□ 0.78
HDDC3-201ENST00000330334 HAS1Q92839 578 aa19.93■□□□□ 0.78
HDDC3-201ENST00000330334 TNFRSF25Q93038 417 aa19.93■□□□□ 0.78
HDDC3-201ENST00000330334 JPH2Q9BR39 696 aaPredicted RBP19.93■□□□□ 0.78
HDDC3-201ENST00000330334 ATP6V0A4Q9HBG4 840 aa19.93■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms