RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 ALCAMQ13740 583 aa20.76■□□□□ 0.91
USP48-201ENST00000308271 LRRC14Q15048 493 aa20.76■□□□□ 0.91
USP48-201ENST00000308271 ERFEQ4G0M1 354 aa20.76■□□□□ 0.91
USP48-201ENST00000308271 SPATA21Q7Z572 469 aa20.76■□□□□ 0.91
USP48-201ENST00000308271 SUGP1Q8IWZ8 645 aaKnown RBP20.76■□□□□ 0.91
USP48-201ENST00000308271 LACRTQ9GZZ8 138 aa20.76■□□□□ 0.91
USP48-201ENST00000308271 MLXIPLQ9NP71 852 aa20.76■□□□□ 0.91
USP48-201ENST00000308271 DIXDC1Q155Q3 683 aa20.76■□□□□ 0.91
USP48-201ENST00000308271 TBC1D9BQ66K14 1250 aa20.76■□□□□ 0.91
USP48-201ENST00000308271 CYB5D1Q6P9G0 228 aa20.76■□□□□ 0.91
USP48-201ENST00000308271 ANKS1AQ92625 1134 aa20.76■□□□□ 0.91
USP48-201ENST00000308271 SYN2Q92777 582 aaPredicted RBP20.76■□□□□ 0.91
USP48-201ENST00000308271 USP15Q9Y4E8 981 aaPredicted RBP20.76■□□□□ 0.91
USP48-201ENST00000308271 PLEKHG2Q9H7P9 1386 aa20.76■□□□□ 0.91
USP48-201ENST00000308271 VWDEQ8N2E2 1590 aa20.76■□□□□ 0.91
USP48-201ENST00000308271 CSF1RP07333 972 aa20.75■□□□□ 0.91
USP48-201ENST00000308271 DRAP1Q14919 205 aaPredicted RBP20.75■□□□□ 0.91
USP48-201ENST00000308271 DEPTORQ8TB45 409 aa20.75■□□□□ 0.91
USP48-201ENST00000308271 HPS3Q969F9 1004 aa20.75■□□□□ 0.91
USP48-201ENST00000308271 PPP1R18Q6NYC8 613 aa20.75■□□□□ 0.91
USP48-201ENST00000308271 TRPM8Q7Z2W7 1104 aa20.75■□□□□ 0.91
USP48-201ENST00000308271 ZC3H18Q86VM9 953 aaKnown RBP20.75■□□□□ 0.91
USP48-201ENST00000308271 PACS2Q86VP3 889 aa20.75■□□□□ 0.91
USP48-201ENST00000308271 SH3GL3Q99963 347 aa20.75■□□□□ 0.91
USP48-201ENST00000308271 CPVLQ9H3G5 476 aa20.75■□□□□ 0.91
USP48-201ENST00000308271 LCMT1Q9UIC8 334 aa20.75■□□□□ 0.91
USP48-201ENST00000308271 PNMA2Q9UL42 364 aa20.75■□□□□ 0.91
USP48-201ENST00000308271 PLS3P13797 630 aa20.75■□□□□ 0.91
USP48-201ENST00000308271 NSMFQ6X4W1 530 aa20.75■□□□□ 0.91
USP48-201ENST00000308271 GLYCTKQ8IVS8 523 aa20.75■□□□□ 0.91
USP48-201ENST00000308271 ARL1P40616 181 aaPredicted RBP20.75■□□□□ 0.91
USP48-201ENST00000308271 KLK7P49862 253 aa20.75■□□□□ 0.91
USP48-201ENST00000308271 RAD23BP54727 409 aa20.75■□□□□ 0.91
USP48-201ENST00000308271 AP3B2Q13367 1082 aa20.75■□□□□ 0.91
USP48-201ENST00000308271 TAB3Q8N5C8 712 aaPredicted RBP20.75■□□□□ 0.91
USP48-201ENST00000308271 CENPKQ9BS16 269 aa20.75■□□□□ 0.91
USP48-201ENST00000308271 ZFP69BQ9UJL9 534 aa20.75■□□□□ 0.91
USP48-201ENST00000308271 WDR91A4D1P6 747 aa20.74■□□□□ 0.91
USP48-201ENST00000308271 HERVK_113P62684 666 aa20.74■□□□□ 0.91
USP48-201ENST00000308271 ARHGAP4P98171 946 aa20.74■□□□□ 0.91
USP48-201ENST00000308271 TTBK2Q6IQ55 1244 aa20.74■□□□□ 0.91
USP48-201ENST00000308271 ST13P4Q8IZP2 240 aaPredicted RBP20.74■□□□□ 0.91
USP48-201ENST00000308271 TTC25Q96NG3 672 aa20.74■□□□□ 0.91
USP48-201ENST00000308271 ZNF577Q9BSK1 485 aa20.74■□□□□ 0.91
USP48-201ENST00000308271 WNT8AQ9H1J5 351 aa20.74■□□□□ 0.91
USP48-201ENST00000308271 KANSL2Q9H9L4 492 aa20.74■□□□□ 0.91
USP48-201ENST00000308271 WDR3Q9UNX4 943 aaKnown RBP eCLIP20.74■□□□□ 0.91
USP48-201ENST00000308271 PIK3C2BO00750 1634 aa20.74■□□□□ 0.91
USP48-201ENST00000308271 RASSF10A6NK89 507 aa20.74■□□□□ 0.91
USP48-201ENST00000308271 GMNNO75496 209 aa20.74■□□□□ 0.91
USP48-201ENST00000308271 KRT1P04264 644 aa20.74■□□□□ 0.91
USP48-201ENST00000308271 CCND1P24385 295 aa20.74■□□□□ 0.91
USP48-201ENST00000308271 PRDX5P30044 214 aa20.74■□□□□ 0.91
USP48-201ENST00000308271 ARHGAP27Q6ZUM4 889 aa20.74■□□□□ 0.91
USP48-201ENST00000308271 CAVIN3Q969G5 261 aa20.74■□□□□ 0.91
USP48-201ENST00000308271 PRMT1Q99873 361 aaKnown RBP20.74■□□□□ 0.91
USP48-201ENST00000308271 VCPKMTQ9H867 229 aa20.74■□□□□ 0.91
USP48-201ENST00000308271 SAYSD1Q9NPB0 183 aa20.74■□□□□ 0.91
USP48-201ENST00000308271 DIAPH2O60879 1101 aa20.74■□□□□ 0.91
USP48-201ENST00000308271 KLRC1P26715 233 aa20.74■□□□□ 0.91
USP48-201ENST00000308271 DDX27Q96GQ7 796 aaKnown RBP20.74■□□□□ 0.91
USP48-201ENST00000308271 CD248Q9HCU0 757 aa20.74■□□□□ 0.91
USP48-201ENST00000308271 PDHA1P08559 390 aa20.73■□□□□ 0.91
USP48-201ENST00000308271 KRT81Q14533 505 aa20.73■□□□□ 0.91
USP48-201ENST00000308271 NUDCD1Q96RS6 583 aa20.73■□□□□ 0.91
USP48-201ENST00000308271 CAPN6Q9Y6Q1 641 aa20.73■□□□□ 0.91
USP48-201ENST00000308271 SHPRHQ149N8 1683 aa20.73■□□□□ 0.91
USP48-201ENST00000308271 POTEB3A0JP26 581 aa20.73■□□□□ 0.91
USP48-201ENST00000308271 POTECB2RU33 542 aa20.73■□□□□ 0.91
USP48-201ENST00000308271 TCP11X1B4DZS4 312 aa20.73■□□□□ 0.91
USP48-201ENST00000308271 HNRNPDLO14979 420 aaKnown RBP20.73■□□□□ 0.91
USP48-201ENST00000308271 HSD17B3P37058 310 aa20.73■□□□□ 0.91
USP48-201ENST00000308271 POTEBQ6S5H4 581 aa20.73■□□□□ 0.91
USP48-201ENST00000308271 PYROXD1Q8WU10 500 aa20.73■□□□□ 0.91
USP48-201ENST00000308271 FAF1Q9UNN5 650 aaPredicted RBP20.73■□□□□ 0.91
USP48-201ENST00000308271 PCDHB4Q9Y5E5 795 aa20.73■□□□□ 0.91
USP48-201ENST00000308271 RFX1P22670 979 aa20.73■□□□□ 0.91
USP48-201ENST00000308271 PIK3CAP42336 1068 aa20.73■□□□□ 0.91
USP48-201ENST00000308271 USP11P51784 963 aa20.73■□□□□ 0.91
USP48-201ENST00000308271 PDIK1LQ8N165 341 aa20.73■□□□□ 0.91
USP48-201ENST00000308271 GSDMBQ8TAX9 411 aa20.73■□□□□ 0.91
USP48-201ENST00000308271 DUSP10Q9Y6W6 482 aa20.73■□□□□ 0.91
USP48-201ENST00000308271 NTRK3Q16288 839 aa20.73■□□□□ 0.91
USP48-201ENST00000308271 GNPTABQ3T906 1256 aa20.73■□□□□ 0.91
USP48-201ENST00000308271 CDKL2Q92772 493 aa20.73■□□□□ 0.91
USP48-201ENST00000308271 TMEM260Q9NX78 707 aa20.73■□□□□ 0.91
USP48-201ENST00000308271 SLAIN2Q9P270 581 aa20.73■□□□□ 0.91
USP48-201ENST00000308271 CNOT8Q9UFF9 292 aaKnown RBP20.73■□□□□ 0.91
USP48-201ENST00000308271 RPS6KA5O75582 802 aa20.72■□□□□ 0.91
USP48-201ENST00000308271 SOX5P35711 763 aa20.72■□□□□ 0.91
USP48-201ENST00000308271 GABPB2Q8TAK5 448 aaPredicted RBP20.72■□□□□ 0.91
USP48-201ENST00000308271 A0A0G2JND7 137 aa20.72■□□□□ 0.91
USP48-201ENST00000308271 IQANK1A0A1B0GTG1 560 aa20.72■□□□□ 0.91
USP48-201ENST00000308271 KRT19P08727 400 aa20.72■□□□□ 0.91
USP48-201ENST00000308271 OSBPL1AQ9BXW6 950 aa20.72■□□□□ 0.91
USP48-201ENST00000308271 ANAPC7Q9UJX3 599 aa20.72■□□□□ 0.91
USP48-201ENST00000308271 USP17L5A8MUK1 530 aa20.72■□□□□ 0.91
USP48-201ENST00000308271 TDP2O95551 362 aa20.72■□□□□ 0.91
USP48-201ENST00000308271 FTLP02792 175 aaPredicted RBP20.72■□□□□ 0.91
USP48-201ENST00000308271 SLC8A3P57103 927 aa20.72■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms