RNA–Protein interactions for RNA: ENST00000249837.7

VPS13C-201, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VPS13C, Length 13,300 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-201ENST00000249837 MAD2L2Q9UI95 211 aa4.98□□□□□ -1.61
VPS13C-201ENST00000249837 USP21Q9UK80 565 aa4.98□□□□□ -1.61
VPS13C-201ENST00000249837 PIK3C2AO00443 1686 aa4.98□□□□□ -1.61
VPS13C-201ENST00000249837 PALM3A6NDB9 673 aaPredicted RBP4.98□□□□□ -1.61
VPS13C-201ENST00000249837 EIF4E1BA6NMX2 242 aaKnown RBP4.98□□□□□ -1.61
VPS13C-201ENST00000249837 NKX1-1Q15270 411 aaPredicted RBP4.98□□□□□ -1.61
VPS13C-201ENST00000249837 RAB3IPQ96QF0 476 aaPredicted RBP4.98□□□□□ -1.61
VPS13C-201ENST00000249837 GJA3Q9Y6H8 435 aa4.98□□□□□ -1.61
VPS13C-201ENST00000249837 I3L4J1 428 aa4.98□□□□□ -1.61
VPS13C-201ENST00000249837 FRMD5Q7Z6J6 570 aa4.98□□□□□ -1.61
VPS13C-201ENST00000249837 RIOK1Q9BRS2 568 aaKnown RBP4.98□□□□□ -1.61
VPS13C-201ENST00000249837 MTMR4Q9NYA4 1195 aa4.98□□□□□ -1.61
VPS13C-201ENST00000249837 WDR3Q9UNX4 943 aaKnown RBP eCLIP4.98□□□□□ -1.61
VPS13C-201ENST00000249837 H7C0C1 242 aa4.98□□□□□ -1.61
VPS13C-201ENST00000249837 MDH1P40925 334 aaKnown RBP4.98□□□□□ -1.61
VPS13C-201ENST00000249837 ATP5OP48047 213 aa4.98□□□□□ -1.61
VPS13C-201ENST00000249837 KCNJ1P48048 391 aa4.98□□□□□ -1.61
VPS13C-201ENST00000249837 LIG4P49917 911 aa4.98□□□□□ -1.61
VPS13C-201ENST00000249837 IL9RQ01113 521 aa4.98□□□□□ -1.61
VPS13C-201ENST00000249837 NAB2Q15742 525 aa4.98□□□□□ -1.61
VPS13C-201ENST00000249837 CLUL1Q15846 466 aa4.98□□□□□ -1.61
VPS13C-201ENST00000249837 GLG1Q92896 1179 aa4.98□□□□□ -1.61
VPS13C-201ENST00000249837 KLHL29Q96CT2 875 aa4.98□□□□□ -1.61
VPS13C-201ENST00000249837 WDR11Q9BZH6 1224 aa4.98□□□□□ -1.61
VPS13C-201ENST00000249837 NTSR2O95665 410 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 MMEP08473 750 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 RASA1P20936 1047 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 GALCP54803 685 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 DYNLT1P63172 113 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 NUMA1Q14980 2115 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 SF3B3Q15393 1217 aaKnown RBP4.97□□□□□ -1.61
VPS13C-201ENST00000249837 PARP9Q8IXQ6 854 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 CCDC89Q8N998 374 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 LRRC8CQ8TDW0 803 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 TSNARE1Q96NA8 513 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 INTS2Q9H0H0 1204 aaKnown RBP4.97□□□□□ -1.61
VPS13C-201ENST00000249837 TXNDC16Q9P2K2 825 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 SPAG7O75391 227 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 HSPA6P17066 643 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 YWHAGP61981 247 aaKnown RBP eCLIP4.97□□□□□ -1.61
VPS13C-201ENST00000249837 IL17AQ16552 155 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 GLYCTKQ8IVS8 523 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 NWD1Q149M9 1564 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 ATP2A2P16615 1042 aaKnown RBP4.97□□□□□ -1.61
VPS13C-201ENST00000249837 ITIH3Q06033 890 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 MYO1EQ12965 1108 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 LINC00116Q8NCU8 138 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 RNF25Q96BH1 459 aaPredicted RBP4.97□□□□□ -1.61
VPS13C-201ENST00000249837 XPO6Q96QU8 1125 aaKnown RBP4.97□□□□□ -1.61
VPS13C-201ENST00000249837 SLC24A3Q9HC58 644 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 FAM237AA0A1B0GTK4 181 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 NDUFB10O96000 172 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 PEX3P56589 373 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 TSNAXIP1Q2TAA8 658 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 CCDC62Q6P9F0 684 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 SRRM1Q8IYB3 904 aaKnown RBP4.97□□□□□ -1.61
VPS13C-201ENST00000249837 HAUS1Q96CS2 278 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 FER1L4A9Z1Z3 1794 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 PI4K2BG5E9Z4 385 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 RPS6KA4O75676 772 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 KRT1P04264 644 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 HNRNPH1P31943 449 aaKnown RBP4.97□□□□□ -1.61
VPS13C-201ENST00000249837 BBS9Q3SYG4 887 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 CFAP157Q5JU67 520 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 ARHGEF16Q5VV41 709 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 TMED8Q6PL24 325 aaPredicted RBP4.97□□□□□ -1.61
VPS13C-201ENST00000249837 FAM47EQ6ZV65 393 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 RPAINQ86UA6 219 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 TXNRD3Q86VQ6 643 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 TMEM139Q8IV31 216 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 FAM167BQ9BTA0 163 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 SPZ1Q9BXG8 430 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 STK33Q9BYT3 514 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 ARHGAP20Q9P2F6 1191 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 EMSYQ7Z589 1322 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 ITGA4P13612 1032 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 MFAP3P55082 362 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 GRB10Q13322 594 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 RILPQ96NA2 401 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 TEKT3Q9BXF9 490 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 KLC4Q9NSK0 619 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 RAB20Q9NX57 234 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 LAMA4Q16363 1823 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 CHD4Q14839 1912 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 RSPH10B2B2RC85 870 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 SGK1O00141 431 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 RSPH10BP0C881 870 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 NSFP46459 744 aaKnown RBP4.97□□□□□ -1.61
VPS13C-201ENST00000249837 ZNF543Q08ER8 600 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 KRT81Q14533 505 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 NFIXQ14938 502 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 NT5DC1Q5TFE4 455 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 DEPTORQ8TB45 409 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 DCAF4Q8WV16 495 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 CYFIP2Q96F07 1278 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 CD248Q9HCU0 757 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 KCND1Q9NSA2 647 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 TMEM51Q9NW97 253 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 PI4KBQ9UBF8 816 aa4.97□□□□□ -1.61
VPS13C-201ENST00000249837 NXF1Q9UBU9 619 aaKnown RBP4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms