RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 FBXO47Q5MNV8 452 aa22.62■■□□□ 1.21
SS18-218ENST00000581021 NCAPH2Q6IBW4 605 aa22.62■■□□□ 1.21
SS18-218ENST00000581021 LIN28BQ6ZN17 250 aaKnown RBP eCLIP22.62■■□□□ 1.21
SS18-218ENST00000581021 RSPH3Q86UC2 560 aa22.62■■□□□ 1.21
SS18-218ENST00000581021 SLFN12Q8IYM2 578 aa22.62■■□□□ 1.21
SS18-218ENST00000581021 AGO3Q9H9G7 860 aaKnown RBP22.62■■□□□ 1.21
SS18-218ENST00000581021 MTMR10Q9NXD2 777 aa22.62■■□□□ 1.21
SS18-218ENST00000581021 RGL1Q9NZL6 768 aa22.62■■□□□ 1.21
SS18-218ENST00000581021 SMC3Q9UQE7 1217 aa22.62■■□□□ 1.21
SS18-218ENST00000581021 TXKP42681 527 aa22.61■■□□□ 1.21
SS18-218ENST00000581021 CLCN3P51790 818 aa22.61■■□□□ 1.21
SS18-218ENST00000581021 PSMC5P62195 406 aa22.61■■□□□ 1.21
SS18-218ENST00000581021 TTC38Q5R3I4 469 aa22.61■■□□□ 1.21
SS18-218ENST00000581021 PLA2G4FQ68DD2 849 aa22.61■■□□□ 1.21
SS18-218ENST00000581021 ANO5Q75V66 913 aa22.61■■□□□ 1.21
SS18-218ENST00000581021 GUCD1Q96NT3 240 aa22.61■■□□□ 1.21
SS18-218ENST00000581021 NIFKQ9BYG3 293 aaKnown RBP22.61■■□□□ 1.21
SS18-218ENST00000581021 TTC12Q9H892 705 aaPredicted RBP22.61■■□□□ 1.21
SS18-218ENST00000581021 CDHR5Q9HBB8 845 aa22.61■■□□□ 1.21
SS18-218ENST00000581021 SEPT9Q9UHD8 586 aaPredicted RBP22.61■■□□□ 1.21
SS18-218ENST00000581021 MICAL3Q7RTP6 2002 aa22.6■■□□□ 1.21
SS18-218ENST00000581021 ABHD14A-ACY1A0A1B0GW23 586 aa22.6■■□□□ 1.21
SS18-218ENST00000581021 MARCH6O60337 910 aa22.6■■□□□ 1.21
SS18-218ENST00000581021 ARHGEF15O94989 841 aa22.6■■□□□ 1.21
SS18-218ENST00000581021 QARSP47897 775 aaKnown RBP22.6■■□□□ 1.21
SS18-218ENST00000581021 GNL2Q13823 731 aaKnown RBP22.6■■□□□ 1.21
SS18-218ENST00000581021 EPHA7Q15375 998 aa22.6■■□□□ 1.21
SS18-218ENST00000581021 XKR3Q5GH77 459 aa22.6■■□□□ 1.21
SS18-218ENST00000581021 HERC6Q8IVU3 1022 aa22.6■■□□□ 1.21
SS18-218ENST00000581021 LRRC71Q8N4P6 559 aa22.6■■□□□ 1.21
SS18-218ENST00000581021 C4orf32Q8N8J7 132 aa22.6■■□□□ 1.21
SS18-218ENST00000581021 ZNF579Q8NAF0 562 aaKnown RBP22.6■■□□□ 1.21
SS18-218ENST00000581021 TIFAQ96CG3 184 aa22.6■■□□□ 1.21
SS18-218ENST00000581021 DYDC2Q96IM9 177 aa22.6■■□□□ 1.21
SS18-218ENST00000581021 PPP1R16BQ96T49 567 aa22.6■■□□□ 1.21
SS18-218ENST00000581021 SLC9A7Q96T83 725 aa22.6■■□□□ 1.21
SS18-218ENST00000581021 LXNQ9BS40 222 aa22.6■■□□□ 1.21
SS18-218ENST00000581021 IFIH1Q9BYX4 1025 aaKnown RBP22.6■■□□□ 1.21
SS18-218ENST00000581021 SEMA6BQ9H3T3 888 aa22.6■■□□□ 1.21
SS18-218ENST00000581021 NRBP2Q9NSY0 501 aa22.6■■□□□ 1.21
SS18-218ENST00000581021 CEP131Q9UPN4 1083 aa22.6■■□□□ 1.21
SS18-218ENST00000581021 KIF3AQ9Y496 699 aa22.6■■□□□ 1.21
SS18-218ENST00000581021 TRPV2Q9Y5S1 764 aa22.6■■□□□ 1.21
SS18-218ENST00000581021 EVPLQ92817 2033 aa22.59■■□□□ 1.21
SS18-218ENST00000581021 LOC101059915A0A1B0GWI6 518 aaPredicted RBP22.59■■□□□ 1.21
SS18-218ENST00000581021 POTEMA6NI47 508 aa22.59■■□□□ 1.21
SS18-218ENST00000581021 BAG4O95429 457 aaKnown RBP22.59■■□□□ 1.21
SS18-218ENST00000581021 TRAPPC10P48553 1259 aa22.59■■□□□ 1.21
SS18-218ENST00000581021 CYP4A11Q02928 519 aa22.59■■□□□ 1.21
SS18-218ENST00000581021 DRP2Q13474 957 aa22.59■■□□□ 1.21
SS18-218ENST00000581021 IKBKEQ14164 716 aa22.59■■□□□ 1.21
SS18-218ENST00000581021 MTERF2Q49AM1 385 aa22.59■■□□□ 1.21
SS18-218ENST00000581021 ZNF697Q5TEC3 545 aa22.59■■□□□ 1.21
SS18-218ENST00000581021 METTL13Q8N6R0 699 aa22.59■■□□□ 1.21
SS18-218ENST00000581021 TMEM40Q8WWA1 233 aa22.59■■□□□ 1.21
SS18-218ENST00000581021 SEPT8Q92599 483 aa22.59■■□□□ 1.21
SS18-218ENST00000581021 CELF4Q9BZC1 486 aaKnown RBP22.59■■□□□ 1.21
SS18-218ENST00000581021 NKX2-4Q9H2Z4 354 aa22.59■■□□□ 1.21
SS18-218ENST00000581021 PCDHA12Q9UN75 941 aa22.59■■□□□ 1.21
SS18-218ENST00000581021 ZSCAN21Q9Y5A6 473 aaPredicted RBP22.59■■□□□ 1.21
SS18-218ENST00000581021 PCDHB6Q9Y5E3 794 aa22.59■■□□□ 1.21
SS18-218ENST00000581021 KDM3AQ9Y4C1 1321 aa22.58■■□□□ 1.21
SS18-218ENST00000581021 DDX11L8A8MPP1 907 aa22.58■■□□□ 1.21
SS18-218ENST00000581021 ZBTB39O15060 712 aa22.58■■□□□ 1.21
SS18-218ENST00000581021 VTNP04004 478 aa22.58■■□□□ 1.21
SS18-218ENST00000581021 P4HBP07237 508 aaKnown RBP22.58■■□□□ 1.21
SS18-218ENST00000581021 CD52P31358 61 aa22.58■■□□□ 1.21
SS18-218ENST00000581021 NPEPPSP55786 919 aa22.58■■□□□ 1.21
SS18-218ENST00000581021 CTTNQ14247 550 aaKnown RBP22.58■■□□□ 1.21
SS18-218ENST00000581021 IER5Q5VY09 327 aa22.58■■□□□ 1.21
SS18-218ENST00000581021 PHOSPHO2Q8TCD6 241 aa22.58■■□□□ 1.21
SS18-218ENST00000581021 LINC01599Q8WXQ3 324 aa22.58■■□□□ 1.21
SS18-218ENST00000581021 HSD17B14Q9BPX1 270 aa22.58■■□□□ 1.21
SS18-218ENST00000581021 EIF2AK1Q9BQI3 630 aaKnown RBP22.58■■□□□ 1.21
SS18-218ENST00000581021 COL6A3P12111 3177 aa22.58■■□□□ 1.2
SS18-218ENST00000581021 SLITRK3O94933 977 aa22.57■■□□□ 1.2
SS18-218ENST00000581021 RPLP2P05387 115 aaKnown RBP22.57■■□□□ 1.2
SS18-218ENST00000581021 OR52Z1P0C646 297 aa22.57■■□□□ 1.2
SS18-218ENST00000581021 KCNJ6P48051 423 aa22.57■■□□□ 1.2
SS18-218ENST00000581021 ORC2Q13416 577 aaPredicted RBP22.57■■□□□ 1.2
SS18-218ENST00000581021 RAB30Q15771 203 aa22.57■■□□□ 1.2
SS18-218ENST00000581021 KIZQ2M2Z5 673 aa22.57■■□□□ 1.2
SS18-218ENST00000581021 MCTP1Q6DN14 999 aa22.57■■□□□ 1.2
SS18-218ENST00000581021 EFCAB12Q6NXP0 572 aa22.57■■□□□ 1.2
SS18-218ENST00000581021 TSHZ1Q6ZSZ6 1077 aa22.57■■□□□ 1.2
SS18-218ENST00000581021 NME8Q8N427 588 aa22.57■■□□□ 1.2
SS18-218ENST00000581021 PCDHA11Q9Y5I1 949 aa22.57■■□□□ 1.2
SS18-218ENST00000581021 IGKV6-21A0A0C4DH24 114 aa22.56■■□□□ 1.2
SS18-218ENST00000581021 K7ELQ4 463 aaPredicted RBP22.56■■□□□ 1.2
SS18-218ENST00000581021 MAGEB2O15479 319 aa22.56■■□□□ 1.2
SS18-218ENST00000581021 GPR32O75388 356 aa22.56■■□□□ 1.2
SS18-218ENST00000581021 TBC1D8BQ0IIM8 1120 aa22.56■■□□□ 1.2
SS18-218ENST00000581021 TMEM266Q2M3C6 531 aa22.56■■□□□ 1.2
SS18-218ENST00000581021 LARP1BQ659C4 914 aaKnown RBP22.56■■□□□ 1.2
SS18-218ENST00000581021 SPRED2Q7Z698 418 aa22.56■■□□□ 1.2
SS18-218ENST00000581021 C4orf19Q8IY42 314 aa22.56■■□□□ 1.2
SS18-218ENST00000581021 NOL7Q9UMY1 257 aaKnown RBP22.56■■□□□ 1.2
SS18-218ENST00000581021 GINS2Q9Y248 185 aa22.56■■□□□ 1.2
SS18-218ENST00000581021 LOXHD1Q8IVV2 1947 aa22.56■■□□□ 1.2
SS18-218ENST00000581021 TMEM265A0A087WTH1 108 aa22.55■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms