RNA–Protein interactions for RNA: ENST00000559389.1

SNX1-206, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 753 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-206ENST00000559389 MTERF2Q49AM1 385 aa24.23■■□□□ 1.47
SNX1-206ENST00000559389 ZNF579Q8NAF0 562 aaKnown RBP24.23■■□□□ 1.47
SNX1-206ENST00000559389 WNT8BQ93098 351 aa24.23■■□□□ 1.47
SNX1-206ENST00000559389 ZBTB10Q96DT7 871 aa24.23■■□□□ 1.47
SNX1-206ENST00000559389 PNMA5Q96PV4 448 aa24.23■■□□□ 1.47
SNX1-206ENST00000559389 CCSER1Q9C0I3 900 aa24.23■■□□□ 1.47
SNX1-206ENST00000559389 SCAND2PQ9GZW5 306 aaPredicted RBP24.23■■□□□ 1.47
SNX1-206ENST00000559389 CYP26B1Q9NR63 512 aa24.23■■□□□ 1.47
SNX1-206ENST00000559389 ANKEF1Q9NU02 776 aa24.23■■□□□ 1.47
SNX1-206ENST00000559389 DDX19AQ9NUU7 478 aaKnown RBP24.23■■□□□ 1.47
SNX1-206ENST00000559389 TRIP12Q14669 1992 aaPredicted RBP24.23■■□□□ 1.47
SNX1-206ENST00000559389 KAT6AQ92794 2004 aa24.23■■□□□ 1.47
SNX1-206ENST00000559389 ZBTB39O15060 712 aa24.22■■□□□ 1.47
SNX1-206ENST00000559389 KIAA0355O15063 1070 aa24.22■■□□□ 1.47
SNX1-206ENST00000559389 UBA7P41226 1012 aa24.22■■□□□ 1.47
SNX1-206ENST00000559389 NPEPPSP55786 919 aa24.22■■□□□ 1.47
SNX1-206ENST00000559389 RBL2Q08999 1139 aa24.22■■□□□ 1.47
SNX1-206ENST00000559389 GRB10Q13322 594 aa24.22■■□□□ 1.47
SNX1-206ENST00000559389 TMEM119Q4V9L6 283 aa24.22■■□□□ 1.47
SNX1-206ENST00000559389 SPECC1Q5M775 1068 aa24.22■■□□□ 1.47
SNX1-206ENST00000559389 AXDND1Q5T1B0 1012 aaPredicted RBP24.22■■□□□ 1.47
SNX1-206ENST00000559389 TAF2Q6P1X5 1199 aa24.22■■□□□ 1.47
SNX1-206ENST00000559389 MTHFD1LQ6UB35 978 aa24.22■■□□□ 1.47
SNX1-206ENST00000559389 USP49Q70CQ1 688 aa24.22■■□□□ 1.47
SNX1-206ENST00000559389 OTUD6AQ7L8S5 288 aa24.22■■□□□ 1.47
SNX1-206ENST00000559389 SH3RF1Q7Z6J0 888 aa24.22■■□□□ 1.47
SNX1-206ENST00000559389 PIGOQ8TEQ8 1089 aa24.22■■□□□ 1.47
SNX1-206ENST00000559389 SYMPKQ92797 1274 aaKnown RBP24.22■■□□□ 1.47
SNX1-206ENST00000559389 NACC1Q96RE7 527 aa24.22■■□□□ 1.47
SNX1-206ENST00000559389 SH2D3AQ9BRG2 576 aa24.22■■□□□ 1.47
SNX1-206ENST00000559389 PRDM5Q9NQX1 630 aaPredicted RBP24.22■■□□□ 1.47
SNX1-206ENST00000559389 TMEM39AQ9NV64 488 aa24.22■■□□□ 1.47
SNX1-206ENST00000559389 DBR1Q9UK59 544 aaKnown RBP24.22■■□□□ 1.47
SNX1-206ENST00000559389 KIAA1024Q9UPX6 916 aa24.22■■□□□ 1.47
SNX1-206ENST00000559389 PPME1Q9Y570 386 aa24.22■■□□□ 1.47
SNX1-206ENST00000559389 XRCC6P12956 609 aaKnown RBP eCLIP24.21■■□□□ 1.47
SNX1-206ENST00000559389 KLRC1P26715 233 aa24.21■■□□□ 1.47
SNX1-206ENST00000559389 ME1P48163 572 aa24.21■■□□□ 1.47
SNX1-206ENST00000559389 RARRES1P49788 294 aa24.21■■□□□ 1.47
SNX1-206ENST00000559389 TRIM71Q2Q1W2 868 aaKnown RBP24.21■■□□□ 1.47
SNX1-206ENST00000559389 RUFY4Q6ZNE9 571 aa24.21■■□□□ 1.47
SNX1-206ENST00000559389 EPSTI1Q96J88 318 aa24.21■■□□□ 1.47
SNX1-206ENST00000559389 CEP170P1Q96L14 293 aa24.21■■□□□ 1.47
SNX1-206ENST00000559389 NOC4LQ9BVI4 516 aaKnown RBP24.21■■□□□ 1.47
SNX1-206ENST00000559389 NT5C3AQ9H0P0 336 aa24.21■■□□□ 1.47
SNX1-206ENST00000559389 PCDHA7Q9UN72 937 aa24.21■■□□□ 1.47
SNX1-206ENST00000559389 PCDHA2Q9Y5H9 948 aa24.21■■□□□ 1.47
SNX1-206ENST00000559389 TRIM43BA6NCK2 446 aa24.2■■□□□ 1.46
SNX1-206ENST00000559389 MAGEB2O15479 319 aa24.2■■□□□ 1.46
SNX1-206ENST00000559389 TXLNAP40222 546 aa24.2■■□□□ 1.46
SNX1-206ENST00000559389 MLLT1Q03111 559 aaPredicted RBP24.2■■□□□ 1.46
SNX1-206ENST00000559389 TBC1D8BQ0IIM8 1120 aa24.2■■□□□ 1.46
SNX1-206ENST00000559389 XKR9Q5GH70 373 aa24.2■■□□□ 1.46
SNX1-206ENST00000559389 KCTD17Q8N5Z5 321 aa24.2■■□□□ 1.46
SNX1-206ENST00000559389 LINC01465Q8N7H1 131 aa24.2■■□□□ 1.46
SNX1-206ENST00000559389 CAGE1Q8TC20 777 aa24.2■■□□□ 1.46
SNX1-206ENST00000559389 TRIM43Q96BQ3 446 aaPredicted RBP24.2■■□□□ 1.46
SNX1-206ENST00000559389 HIPK3Q9H422 1215 aa24.2■■□□□ 1.46
SNX1-206ENST00000559389 A0A087WWV3 80 aa24.19■■□□□ 1.46
SNX1-206ENST00000559389 SMIM35A0A1B0GVV1 85 aa24.19■■□□□ 1.46
SNX1-206ENST00000559389 KARSQ15046 597 aaKnown RBP24.19■■□□□ 1.46
SNX1-206ENST00000559389 ZRSR1Q15695 479 aaKnown RBP24.19■■□□□ 1.46
SNX1-206ENST00000559389 SHC4Q6S5L8 630 aa24.19■■□□□ 1.46
SNX1-206ENST00000559389 KCNK18Q7Z418 384 aa24.19■■□□□ 1.46
SNX1-206ENST00000559389 RPAINQ86UA6 219 aa24.19■■□□□ 1.46
SNX1-206ENST00000559389 CCDC155Q8N6L0 562 aa24.19■■□□□ 1.46
SNX1-206ENST00000559389 CALML4Q96GE6 196 aa24.19■■□□□ 1.46
SNX1-206ENST00000559389 CDK5RAP3Q96JB5 506 aa24.19■■□□□ 1.46
SNX1-206ENST00000559389 CCDC43Q96MW1 224 aaKnown RBP24.19■■□□□ 1.46
SNX1-206ENST00000559389 GDPD2Q9HCC8 539 aa24.19■■□□□ 1.46
SNX1-206ENST00000559389 NR2E3Q9Y5X4 410 aa24.19■■□□□ 1.46
SNX1-206ENST00000559389 PITPNM1O00562 1244 aa24.18■■□□□ 1.46
SNX1-206ENST00000559389 CAND2O75155 1236 aa24.18■■□□□ 1.46
SNX1-206ENST00000559389 PLCG1P19174 1290 aa24.18■■□□□ 1.46
SNX1-206ENST00000559389 RFC5P40937 340 aa24.18■■□□□ 1.46
SNX1-206ENST00000559389 PPP1R12CQ9BZL4 782 aa24.18■■□□□ 1.46
SNX1-206ENST00000559389 DHX33Q9H6R0 707 aaKnown RBP24.18■■□□□ 1.46
SNX1-206ENST00000559389 PRKAG2Q9UGJ0 569 aa24.18■■□□□ 1.46
SNX1-206ENST00000559389 SIP14410 1827 aa24.17■■□□□ 1.46
SNX1-206ENST00000559389 MKI67P46013 3256 aaKnown RBP24.17■■□□□ 1.46
SNX1-206ENST00000559389 UMODL1Q5DID0 1318 aa24.17■■□□□ 1.46
SNX1-206ENST00000559389 IGKV6-21A0A0C4DH24 114 aa24.17■■□□□ 1.46
SNX1-206ENST00000559389 E9PMD0 336 aa24.17■■□□□ 1.46
SNX1-206ENST00000559389 MAFO75444 373 aaPredicted RBP24.17■■□□□ 1.46
SNX1-206ENST00000559389 EYA4O95677 639 aa24.17■■□□□ 1.46
SNX1-206ENST00000559389 RPLP2P05387 115 aaKnown RBP24.17■■□□□ 1.46
SNX1-206ENST00000559389 POLGP54098 1239 aaPredicted RBP24.17■■□□□ 1.46
SNX1-206ENST00000559389 BFSP2Q13515 415 aa24.17■■□□□ 1.46
SNX1-206ENST00000559389 RASSF8Q8NHQ8 419 aa24.17■■□□□ 1.46
SNX1-206ENST00000559389 LRRC15Q8TF66 581 aa24.17■■□□□ 1.46
SNX1-206ENST00000559389 SLC7A3Q8WY07 619 aa24.17■■□□□ 1.46
SNX1-206ENST00000559389 PLIN2Q99541 437 aa24.17■■□□□ 1.46
SNX1-206ENST00000559389 BHMT2Q9H2M3 363 aa24.17■■□□□ 1.46
SNX1-206ENST00000559389 ZMYND8Q9ULU4 1186 aaPredicted RBP24.17■■□□□ 1.46
SNX1-206ENST00000559389 ARHGEF35A5YM69 484 aa24.16■■□□□ 1.46
SNX1-206ENST00000559389 CKBP12277 381 aa24.16■■□□□ 1.46
SNX1-206ENST00000559389 SYN1P17600 705 aa24.16■■□□□ 1.46
SNX1-206ENST00000559389 ITGB8P26012 769 aa24.16■■□□□ 1.46
SNX1-206ENST00000559389 CLCN3P51790 818 aa24.16■■□□□ 1.46
SNX1-206ENST00000559389 EMC2Q15006 297 aa24.16■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms