RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 SMIM10L2AP0DMW4 78 aa12.95□□□□□ -0.34
YBX3-213ENST00000542641 SMIM10L2BP0DMW5 78 aa12.95□□□□□ -0.34
YBX3-213ENST00000542641 XRCC6P12956 609 aaKnown RBP eCLIP12.95□□□□□ -0.34
YBX3-213ENST00000542641 INSRRP14616 1297 aa12.95□□□□□ -0.34
YBX3-213ENST00000542641 PLCG1P19174 1290 aa12.95□□□□□ -0.34
YBX3-213ENST00000542641 PPFIA1Q13136 1202 aa12.95□□□□□ -0.34
YBX3-213ENST00000542641 TMEM119Q4V9L6 283 aa12.95□□□□□ -0.34
YBX3-213ENST00000542641 RRAGBQ5VZM2 374 aa12.95□□□□□ -0.34
YBX3-213ENST00000542641 NFRKBQ6P4R8 1299 aa12.95□□□□□ -0.34
YBX3-213ENST00000542641 CCDC73Q6ZRK6 1079 aa12.95□□□□□ -0.34
YBX3-213ENST00000542641 ANO5Q75V66 913 aa12.95□□□□□ -0.34
YBX3-213ENST00000542641 NECAB2Q7Z6G3 386 aa12.95□□□□□ -0.34
YBX3-213ENST00000542641 KCTD17Q8N5Z5 321 aa12.95□□□□□ -0.34
YBX3-213ENST00000542641 PDILTQ8N807 584 aa12.95□□□□□ -0.34
YBX3-213ENST00000542641 FSIP1Q8NA03 581 aa12.95□□□□□ -0.34
YBX3-213ENST00000542641 MRPS27Q92552 414 aaKnown RBP12.95□□□□□ -0.34
YBX3-213ENST00000542641 CCDC43Q96MW1 224 aaKnown RBP12.95□□□□□ -0.34
YBX3-213ENST00000542641 NIFKQ9BYG3 293 aaKnown RBP12.95□□□□□ -0.34
YBX3-213ENST00000542641 ANKEF1Q9NU02 776 aa12.95□□□□□ -0.34
YBX3-213ENST00000542641 SETD4Q9NVD3 440 aa12.95□□□□□ -0.34
YBX3-213ENST00000542641 KCNH3Q9ULD8 1083 aa12.95□□□□□ -0.34
YBX3-213ENST00000542641 FRMPD3Q5JV73 1810 aa12.95□□□□□ -0.34
YBX3-213ENST00000542641 NRCAMQ92823 1304 aa12.94□□□□□ -0.34
YBX3-213ENST00000542641 TCHHQ07283 1943 aa12.94□□□□□ -0.34
YBX3-213ENST00000542641 RRN3P2A6NIE6 340 aa12.94□□□□□ -0.34
YBX3-213ENST00000542641 E9PMD0 336 aa12.94□□□□□ -0.34
YBX3-213ENST00000542641 POLR2DO15514 142 aaKnown RBP12.94□□□□□ -0.34
YBX3-213ENST00000542641 GADD45BO75293 160 aaPredicted RBP12.94□□□□□ -0.34
YBX3-213ENST00000542641 COL6A1P12109 1028 aa12.94□□□□□ -0.34
YBX3-213ENST00000542641 PFKFB1P16118 471 aa12.94□□□□□ -0.34
YBX3-213ENST00000542641 ATN1P54259 1190 aaPredicted RBP12.94□□□□□ -0.34
YBX3-213ENST00000542641 SOX10P56693 466 aa12.94□□□□□ -0.34
YBX3-213ENST00000542641 IGBP1P78318 339 aa12.94□□□□□ -0.34
YBX3-213ENST00000542641 GRIK4Q16099 956 aa12.94□□□□□ -0.34
YBX3-213ENST00000542641 MTERF2Q49AM1 385 aa12.94□□□□□ -0.34
YBX3-213ENST00000542641 XKR9Q5GH70 373 aa12.94□□□□□ -0.34
YBX3-213ENST00000542641 ZNF484Q5JVG2 852 aa12.94□□□□□ -0.34
YBX3-213ENST00000542641 PLA2G4FQ68DD2 849 aa12.94□□□□□ -0.34
YBX3-213ENST00000542641 MS4A3Q96HJ5 214 aa12.94□□□□□ -0.34
YBX3-213ENST00000542641 CEP170P1Q96L14 293 aa12.94□□□□□ -0.34
YBX3-213ENST00000542641 SH2D3AQ9BRG2 576 aa12.94□□□□□ -0.34
YBX3-213ENST00000542641 PYM1Q9BRP8 204 aaKnown RBP12.94□□□□□ -0.34
YBX3-213ENST00000542641 SEZ6LQ9BYH1 1024 aa12.94□□□□□ -0.34
YBX3-213ENST00000542641 HDAC6Q9UBN7 1215 aa12.94□□□□□ -0.34
YBX3-213ENST00000542641 DBR1Q9UK59 544 aaKnown RBP12.94□□□□□ -0.34
YBX3-213ENST00000542641 A0A087X0B3 334 aa12.93□□□□□ -0.34
YBX3-213ENST00000542641 C17orf102A2RUQ5 167 aa12.93□□□□□ -0.34
YBX3-213ENST00000542641 ARVCFO00192 962 aa12.93□□□□□ -0.34
YBX3-213ENST00000542641 EYA4O95677 639 aa12.93□□□□□ -0.34
YBX3-213ENST00000542641 SSBP05455 408 aaKnown RBP eCLIP12.93□□□□□ -0.34
YBX3-213ENST00000542641 GNAT1P11488 350 aa12.93□□□□□ -0.34
YBX3-213ENST00000542641 STAT6P42226 847 aa12.93□□□□□ -0.34
YBX3-213ENST00000542641 NDUFA8P51970 172 aa12.93□□□□□ -0.34
YBX3-213ENST00000542641 NPEPPSP55786 919 aa12.93□□□□□ -0.34
YBX3-213ENST00000542641 UBE2HP62256 183 aa12.93□□□□□ -0.34
YBX3-213ENST00000542641 PTPN11Q06124 597 aaPredicted RBP12.93□□□□□ -0.34
YBX3-213ENST00000542641 SLC39A5Q6ZMH5 540 aa12.93□□□□□ -0.34
YBX3-213ENST00000542641 KCNK18Q7Z418 384 aa12.93□□□□□ -0.34
YBX3-213ENST00000542641 SESTD1Q86VW0 696 aa12.93□□□□□ -0.34
YBX3-213ENST00000542641 IQUBQ8NA54 791 aa12.93□□□□□ -0.34
YBX3-213ENST00000542641 SLC43A3Q8NBI5 491 aa12.93□□□□□ -0.34
YBX3-213ENST00000542641 TRAPPC12Q8WVT3 735 aa12.93□□□□□ -0.34
YBX3-213ENST00000542641 BHMT2Q9H2M3 363 aa12.93□□□□□ -0.34
YBX3-213ENST00000542641 GOLPH3LQ9H4A5 285 aa12.93□□□□□ -0.34
YBX3-213ENST00000542641 CYP26B1Q9NR63 512 aa12.93□□□□□ -0.34
YBX3-213ENST00000542641 GTF2IRD1Q9UHL9 959 aa12.93□□□□□ -0.34
YBX3-213ENST00000542641 HPSEQ9Y251 543 aa12.93□□□□□ -0.34
YBX3-213ENST00000542641 FAM237AA0A1B0GTK4 181 aa12.92□□□□□ -0.34
YBX3-213ENST00000542641 ARHGEF35A5YM69 484 aa12.92□□□□□ -0.34
YBX3-213ENST00000542641 ZBTB42B2RXF5 422 aa12.92□□□□□ -0.34
YBX3-213ENST00000542641 GALR2O43603 387 aaPredicted RBP12.92□□□□□ -0.34
YBX3-213ENST00000542641 PLA2G4BP0C869 781 aa12.92□□□□□ -0.34
YBX3-213ENST00000542641 KLRC1P26715 233 aa12.92□□□□□ -0.34
YBX3-213ENST00000542641 SYKP43405 635 aa12.92□□□□□ -0.34
YBX3-213ENST00000542641 RARRES1P49788 294 aa12.92□□□□□ -0.34
YBX3-213ENST00000542641 CDK7P50613 346 aa12.92□□□□□ -0.34
YBX3-213ENST00000542641 TBC1D8BQ0IIM8 1120 aa12.92□□□□□ -0.34
YBX3-213ENST00000542641 HIC1Q14526 733 aa12.92□□□□□ -0.34
YBX3-213ENST00000542641 DHX8Q14562 1220 aaKnown RBP12.92□□□□□ -0.34
YBX3-213ENST00000542641 TARBP2Q15633 366 aaKnown RBP12.92□□□□□ -0.34
YBX3-213ENST00000542641 LRRC15Q8TF66 581 aa12.92□□□□□ -0.34
YBX3-213ENST00000542641 LMBR1Q8WVP7 490 aa12.92□□□□□ -0.34
YBX3-213ENST00000542641 LARP4BQ92615 738 aaKnown RBP12.92□□□□□ -0.34
YBX3-213ENST00000542641 RAD54LQ92698 747 aa12.92□□□□□ -0.34
YBX3-213ENST00000542641 DHX58Q96C10 678 aa12.92□□□□□ -0.34
YBX3-213ENST00000542641 LMBRD1Q9NUN5 540 aa12.92□□□□□ -0.34
YBX3-213ENST00000542641 STK17AQ9UEE5 414 aa12.92□□□□□ -0.34
YBX3-213ENST00000542641 PPME1Q9Y570 386 aa12.92□□□□□ -0.34
YBX3-213ENST00000542641 COL1A2P08123 1366 aa12.92□□□□□ -0.34
YBX3-213ENST00000542641 KIAA0100Q14667 2235 aaKnown RBP12.91□□□□□ -0.34
YBX3-213ENST00000542641 MAGEB2O15479 319 aa12.91□□□□□ -0.34
YBX3-213ENST00000542641 ZNF202O95125 648 aa12.91□□□□□ -0.34
YBX3-213ENST00000542641 HOXC8P31273 242 aa12.91□□□□□ -0.34
YBX3-213ENST00000542641 MCM4P33991 863 aa12.91□□□□□ -0.34
YBX3-213ENST00000542641 POLGP54098 1239 aaPredicted RBP12.91□□□□□ -0.34
YBX3-213ENST00000542641 SLC12A3P55017 1021 aa12.91□□□□□ -0.34
YBX3-213ENST00000542641 ZNF200P98182 395 aaPredicted RBP12.91□□□□□ -0.34
YBX3-213ENST00000542641 MCM6Q14566 821 aa12.91□□□□□ -0.34
YBX3-213ENST00000542641 E2F4Q16254 413 aa12.91□□□□□ -0.34
YBX3-213ENST00000542641 PTGISQ16647 500 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms