RNA–Protein interactions for RNA: ENST00000503360.1

HMGB1P35-201, Transcript of high mobility group box 1 pseudogene 35, humanhuman

BASIC

Gene HMGB1P35, Length 598 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P35-201ENST00000503360 INO80BQ9C086 356 aaPredicted RBP3.57□□□□□ -1.84
HMGB1P35-201ENST00000503360 ZDHHC5Q9C0B5 715 aa3.57□□□□□ -1.84
HMGB1P35-201ENST00000503360 ARHGEF4Q9NR80 690 aa3.57□□□□□ -1.84
HMGB1P35-201ENST00000503360 TLR9Q9NR96 1032 aa3.57□□□□□ -1.84
HMGB1P35-201ENST00000503360 GPR27Q9NS67 375 aa3.57□□□□□ -1.84
HMGB1P35-201ENST00000503360 FANCLQ9NW38 375 aa3.57□□□□□ -1.84
HMGB1P35-201ENST00000503360 PUF60Q9UHX1 559 aaKnown RBP3.57□□□□□ -1.84
HMGB1P35-201ENST00000503360 TRAV20A0A0B4J274 112 aa3.56□□□□□ -1.84
HMGB1P35-201ENST00000503360 PRODHO43272 600 aa3.56□□□□□ -1.84
HMGB1P35-201ENST00000503360 BMP5P22003 454 aa3.56□□□□□ -1.84
HMGB1P35-201ENST00000503360 ECI1P42126 302 aa3.56□□□□□ -1.84
HMGB1P35-201ENST00000503360 IL12RB1P42701 662 aa3.56□□□□□ -1.84
HMGB1P35-201ENST00000503360 TUSC3Q13454 348 aa3.56□□□□□ -1.84
HMGB1P35-201ENST00000503360 EIF4HQ15056 248 aaKnown RBP3.56□□□□□ -1.84
HMGB1P35-201ENST00000503360 LONRF2Q1L5Z9 754 aa3.56□□□□□ -1.84
HMGB1P35-201ENST00000503360 HABP4Q5JVS0 413 aaKnown RBP3.56□□□□□ -1.84
HMGB1P35-201ENST00000503360 FOXB2Q5VYV0 432 aa3.56□□□□□ -1.84
HMGB1P35-201ENST00000503360 LAIR1Q6GTX8 287 aa3.56□□□□□ -1.84
HMGB1P35-201ENST00000503360 HOMER1Q86YM7 354 aa3.56□□□□□ -1.84
HMGB1P35-201ENST00000503360 ZSWIM2Q8NEG5 633 aa3.56□□□□□ -1.84
HMGB1P35-201ENST00000503360 IPO9Q96P70 1041 aaKnown RBP3.56□□□□□ -1.84
HMGB1P35-201ENST00000503360 IER2Q9BTL4 223 aa3.56□□□□□ -1.84
HMGB1P35-201ENST00000503360 TTPALQ9BTX7 342 aa3.56□□□□□ -1.84
HMGB1P35-201ENST00000503360 TMEM260Q9NX78 707 aa3.56□□□□□ -1.84
HMGB1P35-201ENST00000503360 PTPN22Q9Y2R2 807 aa3.56□□□□□ -1.84
HMGB1P35-201ENST00000503360 TRBV23-1A0A0A0MS06 115 aa3.55□□□□□ -1.84
HMGB1P35-201ENST00000503360 A0A0A6YYK5 440 aaPredicted RBP3.55□□□□□ -1.84
HMGB1P35-201ENST00000503360 ENPP3O14638 875 aa3.55□□□□□ -1.84
HMGB1P35-201ENST00000503360 SLC27A2O14975 620 aa3.55□□□□□ -1.84
HMGB1P35-201ENST00000503360 CDC45O75419 566 aa3.55□□□□□ -1.84
HMGB1P35-201ENST00000503360 LMNAP02545 664 aaKnown RBP3.55□□□□□ -1.84
HMGB1P35-201ENST00000503360 FGFR1P11362 822 aa3.55□□□□□ -1.84
HMGB1P35-201ENST00000503360 PABPC1P11940 636 aaKnown RBP3.55□□□□□ -1.84
HMGB1P35-201ENST00000503360 LCP1P13796 627 aa3.55□□□□□ -1.84
HMGB1P35-201ENST00000503360 HSD3B2P26439 372 aa3.55□□□□□ -1.84
HMGB1P35-201ENST00000503360 MSX2P35548 267 aaPredicted RBP3.55□□□□□ -1.84
HMGB1P35-201ENST00000503360 KCNJ6P48051 423 aa3.55□□□□□ -1.84
HMGB1P35-201ENST00000503360 GLRBP48167 497 aa3.55□□□□□ -1.84
HMGB1P35-201ENST00000503360 SPIRE1Q08AE8 756 aa3.55□□□□□ -1.84
HMGB1P35-201ENST00000503360 MAP4K2Q12851 820 aa3.55□□□□□ -1.84
HMGB1P35-201ENST00000503360 SF1Q15637 639 aaKnown RBP3.55□□□□□ -1.84
HMGB1P35-201ENST00000503360 ZC3H12BQ5HYM0 836 aaKnown RBP3.55□□□□□ -1.84
HMGB1P35-201ENST00000503360 FAM209AQ5JX71 171 aa3.55□□□□□ -1.84
HMGB1P35-201ENST00000503360 EGFLAMQ63HQ2 1017 aa3.55□□□□□ -1.84
HMGB1P35-201ENST00000503360 DENND5AQ6IQ26 1287 aa3.55□□□□□ -1.84
HMGB1P35-201ENST00000503360 NSMFQ6X4W1 530 aa3.55□□□□□ -1.84
HMGB1P35-201ENST00000503360 PNPLA5Q7Z6Z6 429 aaPredicted RBP3.55□□□□□ -1.84
HMGB1P35-201ENST00000503360 PIP4K2CQ8TBX8 421 aa3.55□□□□□ -1.84
HMGB1P35-201ENST00000503360 EXOC2Q96KP1 924 aa3.55□□□□□ -1.84
HMGB1P35-201ENST00000503360 TRAF5O00463 557 aa3.54□□□□□ -1.84
HMGB1P35-201ENST00000503360 PPP1R12AO14974 1030 aaPredicted RBP3.54□□□□□ -1.84
HMGB1P35-201ENST00000503360 DLX3O60479 287 aa3.54□□□□□ -1.84
HMGB1P35-201ENST00000503360 CLSTN1O94985 981 aa3.54□□□□□ -1.84
HMGB1P35-201ENST00000503360 ASMTLO95671 621 aa3.54□□□□□ -1.84
HMGB1P35-201ENST00000503360 GCP02774 474 aa3.54□□□□□ -1.84
HMGB1P35-201ENST00000503360 ITGB6P18564 788 aa3.54□□□□□ -1.84
HMGB1P35-201ENST00000503360 CANXP27824 592 aaKnown RBP3.54□□□□□ -1.84
HMGB1P35-201ENST00000503360 PTGS2P35354 604 aa3.54□□□□□ -1.84
HMGB1P35-201ENST00000503360 MRPS21P82921 87 aaKnown RBP3.54□□□□□ -1.84
HMGB1P35-201ENST00000503360 GRIN1Q05586 938 aa3.54□□□□□ -1.84
HMGB1P35-201ENST00000503360 STILQ15468 1287 aa3.54□□□□□ -1.84
HMGB1P35-201ENST00000503360 PHF19Q5T6S3 580 aa3.54□□□□□ -1.84
HMGB1P35-201ENST00000503360 SYCE2Q6PIF2 218 aa3.54□□□□□ -1.84
HMGB1P35-201ENST00000503360 ZNF662Q6ZS27 426 aa3.54□□□□□ -1.84
HMGB1P35-201ENST00000503360 C16orf86Q6ZW13 317 aa3.54□□□□□ -1.84
HMGB1P35-201ENST00000503360 USP30Q70CQ3 517 aa3.54□□□□□ -1.84
HMGB1P35-201ENST00000503360 RPUSD2Q8IZ73 545 aaKnown RBP3.54□□□□□ -1.84
HMGB1P35-201ENST00000503360 ANKRD35Q8N283 1001 aa3.54□□□□□ -1.84
HMGB1P35-201ENST00000503360 KCTD13Q8WZ19 329 aa3.54□□□□□ -1.84
HMGB1P35-201ENST00000503360 OSBP2Q969R2 916 aa3.54□□□□□ -1.84
HMGB1P35-201ENST00000503360 DHRS4Q9BTZ2 278 aa3.54□□□□□ -1.84
HMGB1P35-201ENST00000503360 REXO2Q9Y3B8 237 aaKnown RBP3.54□□□□□ -1.84
HMGB1P35-201ENST00000503360 MRPS23Q9Y3D9 190 aaKnown RBP3.54□□□□□ -1.84
HMGB1P35-201ENST00000503360 CCDC163A0A0D9SF12 145 aa3.53□□□□□ -1.84
HMGB1P35-201ENST00000503360 PROZP22891 400 aa3.53□□□□□ -1.84
HMGB1P35-201ENST00000503360 C21orf58P58505 322 aa3.53□□□□□ -1.84
HMGB1P35-201ENST00000503360 HGFACQ04756 655 aa3.53□□□□□ -1.84
HMGB1P35-201ENST00000503360 DBPQ10586 325 aaPredicted RBP3.53□□□□□ -1.84
HMGB1P35-201ENST00000503360 GRM7Q14831 915 aa3.53□□□□□ -1.84
HMGB1P35-201ENST00000503360 TCEA2Q15560 299 aa3.53□□□□□ -1.84
HMGB1P35-201ENST00000503360 PRSS53Q2L4Q9 553 aa3.53□□□□□ -1.84
HMGB1P35-201ENST00000503360 TKFCQ3LXA3 575 aa3.53□□□□□ -1.84
HMGB1P35-201ENST00000503360 PLEKHG4Q58EX7 1191 aa3.53□□□□□ -1.84
HMGB1P35-201ENST00000503360 TRIM68Q6AZZ1 485 aa3.53□□□□□ -1.84
HMGB1P35-201ENST00000503360 SGMS1Q86VZ5 419 aa3.53□□□□□ -1.84
HMGB1P35-201ENST00000503360 TMEM145Q8NBT3 493 aa3.53□□□□□ -1.84
HMGB1P35-201ENST00000503360 LENG9Q96B70 501 aa3.53□□□□□ -1.84
HMGB1P35-201ENST00000503360 ZFYVE21Q9BQ24 234 aa3.53□□□□□ -1.84
HMGB1P35-201ENST00000503360 TACO1Q9BSH4 297 aaKnown RBP3.53□□□□□ -1.84
HMGB1P35-201ENST00000503360 C12orf65Q9H3J6 166 aaKnown RBP3.53□□□□□ -1.84
HMGB1P35-201ENST00000503360 WDR3Q9UNX4 943 aaKnown RBP eCLIP3.53□□□□□ -1.84
HMGB1P35-201ENST00000503360 SBNO2Q9Y2G9 1366 aa3.52□□□□□ -1.85
HMGB1P35-201ENST00000503360 BLACEA4D250 179 aa3.52□□□□□ -1.85
HMGB1P35-201ENST00000503360 PPFIA4O75335 1185 aa3.52□□□□□ -1.85
HMGB1P35-201ENST00000503360 RAPGEF3O95398 923 aa3.52□□□□□ -1.85
HMGB1P35-201ENST00000503360 KRTAP10-9P60411 292 aa3.52□□□□□ -1.85
HMGB1P35-201ENST00000503360 SUMO1P63165 101 aaKnown RBP3.52□□□□□ -1.85
HMGB1P35-201ENST00000503360 RRP1BQ14684 758 aaKnown RBP3.52□□□□□ -1.85
HMGB1P35-201ENST00000503360 TBR1Q16650 682 aa3.52□□□□□ -1.85
HMGB1P35-201ENST00000503360 C21orf62-AS1Q17RA5 79 aa3.52□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms