RNA–Protein interactions for RNA: ENST00000430669.6

PTCH1-208, Transcript of patched 1, humanhuman

TSL 5 BASIC

Gene PTCH1, Length 8,232 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-208ENST00000430669 TRIM50Q86XT4 487 aa12.49□□□□□ -0.41
PTCH1-208ENST00000430669 EIF4A3P38919 411 aaKnown RBP12.49□□□□□ -0.41
PTCH1-208ENST00000430669 PADI6Q6TGC4 694 aa12.49□□□□□ -0.41
PTCH1-208ENST00000430669 NLRP7Q8WX94 980 aa12.49□□□□□ -0.41
PTCH1-208ENST00000430669 RHOBTB3O94955 611 aa12.49□□□□□ -0.41
PTCH1-208ENST00000430669 ATF2P15336 505 aa12.49□□□□□ -0.41
PTCH1-208ENST00000430669 SYNPO2Q9UMS6 1093 aa12.49□□□□□ -0.41
PTCH1-208ENST00000430669 CDC42EP1Q00587 391 aa12.49□□□□□ -0.41
PTCH1-208ENST00000430669 MED10Q9BTT4 135 aa12.49□□□□□ -0.41
PTCH1-208ENST00000430669 INO80B-WBP1J3KQ70 363 aa12.48□□□□□ -0.41
PTCH1-208ENST00000430669 GYS1P13807 737 aa12.48□□□□□ -0.41
PTCH1-208ENST00000430669 UBXN2AP68543 259 aa12.48□□□□□ -0.41
PTCH1-208ENST00000430669 EHHADHQ08426 723 aa12.48□□□□□ -0.41
PTCH1-208ENST00000430669 INO80BQ9C086 356 aaPredicted RBP12.48□□□□□ -0.41
PTCH1-208ENST00000430669 JPH1Q9HDC5 661 aaPredicted RBP12.48□□□□□ -0.41
PTCH1-208ENST00000430669 I3L4J1 428 aa12.48□□□□□ -0.41
PTCH1-208ENST00000430669 PPFIA4O75335 1185 aa12.48□□□□□ -0.41
PTCH1-208ENST00000430669 CTTNQ14247 550 aaKnown RBP12.48□□□□□ -0.41
PTCH1-208ENST00000430669 CAPN11Q9UMQ6 739 aa12.48□□□□□ -0.41
PTCH1-208ENST00000430669 GDAQ9Y2T3 454 aa12.48□□□□□ -0.41
PTCH1-208ENST00000430669 SMIM23A6NLE4 172 aa12.48□□□□□ -0.41
PTCH1-208ENST00000430669 CLIC2O15247 247 aa12.48□□□□□ -0.41
PTCH1-208ENST00000430669 PHKA2P46019 1235 aa12.48□□□□□ -0.41
PTCH1-208ENST00000430669 ALS2CLQ60I27 953 aa12.48□□□□□ -0.41
PTCH1-208ENST00000430669 GMCL1P1Q8NEA9 526 aa12.48□□□□□ -0.41
PTCH1-208ENST00000430669 TRIM9Q9C026 710 aa12.48□□□□□ -0.41
PTCH1-208ENST00000430669 RPAP3Q9H6T3 665 aaPredicted RBP12.48□□□□□ -0.41
PTCH1-208ENST00000430669 NHSL1Q5SYE7 1610 aa12.48□□□□□ -0.41
PTCH1-208ENST00000430669 ANO9A1A5B4 782 aa12.48□□□□□ -0.41
PTCH1-208ENST00000430669 PDXKO00764 312 aa12.48□□□□□ -0.41
PTCH1-208ENST00000430669 ATP1A3P13637 1013 aa12.48□□□□□ -0.41
PTCH1-208ENST00000430669 MRPS9P82933 396 aaKnown RBP12.48□□□□□ -0.41
PTCH1-208ENST00000430669 ZNF653Q96CK0 615 aa12.48□□□□□ -0.41
PTCH1-208ENST00000430669 ZNF302Q9NR11 478 aa12.48□□□□□ -0.41
PTCH1-208ENST00000430669 PITPNM2Q9BZ72 1349 aa12.48□□□□□ -0.41
PTCH1-208ENST00000430669 ZNF280CQ8ND82 737 aa12.48□□□□□ -0.41
PTCH1-208ENST00000430669 POTEB3A0JP26 581 aa12.48□□□□□ -0.41
PTCH1-208ENST00000430669 A6NJR5 290 aa12.48□□□□□ -0.41
PTCH1-208ENST00000430669 POTECB2RU33 542 aa12.48□□□□□ -0.41
PTCH1-208ENST00000430669 NDUFAB1O14561 156 aa12.48□□□□□ -0.41
PTCH1-208ENST00000430669 GFPT2O94808 682 aa12.48□□□□□ -0.41
PTCH1-208ENST00000430669 POTEBQ6S5H4 581 aa12.48□□□□□ -0.41
PTCH1-208ENST00000430669 MSTO1Q9BUK6 570 aa12.48□□□□□ -0.41
PTCH1-208ENST00000430669 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.48□□□□□ -0.41
PTCH1-208ENST00000430669 A0A1B0GTH6 734 aa12.48□□□□□ -0.41
PTCH1-208ENST00000430669 GRID2IPA4D2P6 1211 aa12.48□□□□□ -0.41
PTCH1-208ENST00000430669 CAPN9O14815 690 aa12.48□□□□□ -0.41
PTCH1-208ENST00000430669 LRRN2O75325 713 aa12.48□□□□□ -0.41
PTCH1-208ENST00000430669 MYBL1P10243 752 aa12.48□□□□□ -0.41
PTCH1-208ENST00000430669 PPANQ9NQ55 473 aaKnown RBP12.48□□□□□ -0.41
PTCH1-208ENST00000430669 STRIP2Q9ULQ0 834 aa12.48□□□□□ -0.41
PTCH1-208ENST00000430669 ADCY8P40145 1251 aa12.47□□□□□ -0.41
PTCH1-208ENST00000430669 KCNH2Q12809 1159 aa12.47□□□□□ -0.41
PTCH1-208ENST00000430669 CNPY4Q8N129 248 aa12.47□□□□□ -0.41
PTCH1-208ENST00000430669 C2orf69Q8N8R5 385 aa12.47□□□□□ -0.41
PTCH1-208ENST00000430669 TUBE1Q9UJT0 475 aa12.47□□□□□ -0.41
PTCH1-208ENST00000430669 MYO5AQ9Y4I1 1855 aaKnown RBP12.47□□□□□ -0.41
PTCH1-208ENST00000430669 CCDC188H7C350 402 aa12.47□□□□□ -0.41
PTCH1-208ENST00000430669 KRT71Q3SY84 523 aa12.47□□□□□ -0.41
PTCH1-208ENST00000430669 FAM205AQ6ZU69 1335 aa12.47□□□□□ -0.41
PTCH1-208ENST00000430669 POTEFA5A3E0 1075 aa12.47□□□□□ -0.41
PTCH1-208ENST00000430669 POTEIP0CG38 1075 aa12.47□□□□□ -0.41
PTCH1-208ENST00000430669 RASSF2P50749 326 aa12.47□□□□□ -0.41
PTCH1-208ENST00000430669 PEX3P56589 373 aa12.47□□□□□ -0.41
PTCH1-208ENST00000430669 MTERF2Q49AM1 385 aa12.47□□□□□ -0.41
PTCH1-208ENST00000430669 POTEGQ6S5H5 508 aa12.47□□□□□ -0.41
PTCH1-208ENST00000430669 POTEEQ6S8J3 1075 aa12.47□□□□□ -0.41
PTCH1-208ENST00000430669 RNF146Q9NTX7 359 aa12.47□□□□□ -0.41
PTCH1-208ENST00000430669 LIMA1Q9UHB6 759 aaKnown RBP12.47□□□□□ -0.41
PTCH1-208ENST00000430669 TROAPQ12815 778 aa12.47□□□□□ -0.41
PTCH1-208ENST00000430669 PIGOQ8TEQ8 1089 aa12.47□□□□□ -0.41
PTCH1-208ENST00000430669 NACA2Q9H009 215 aa12.47□□□□□ -0.41
PTCH1-208ENST00000430669 ST7Q9NRC1 585 aa12.47□□□□□ -0.41
PTCH1-208ENST00000430669 BTAF1O14981 1849 aa12.47□□□□□ -0.41
PTCH1-208ENST00000430669 MARF1Q9Y4F3 1742 aaKnown RBP12.47□□□□□ -0.41
PTCH1-208ENST00000430669 MIF4GDA9UHW6 222 aaKnown RBP12.47□□□□□ -0.41
PTCH1-208ENST00000430669 CTNND1O60716 968 aaKnown RBP12.47□□□□□ -0.41
PTCH1-208ENST00000430669 VIMP08670 466 aaKnown RBP12.47□□□□□ -0.41
PTCH1-208ENST00000430669 PRR29P0C7W0 189 aa12.47□□□□□ -0.41
PTCH1-208ENST00000430669 FCER1AP12319 257 aa12.47□□□□□ -0.41
PTCH1-208ENST00000430669 EPHA7Q15375 998 aa12.47□□□□□ -0.41
PTCH1-208ENST00000430669 RDM1Q8NG50 284 aa12.47□□□□□ -0.41
PTCH1-208ENST00000430669 EN1Q05925 392 aaPredicted RBP12.47□□□□□ -0.41
PTCH1-208ENST00000430669 SNX25Q9H3E2 840 aa12.47□□□□□ -0.41
PTCH1-208ENST00000430669 PODXLO00592 558 aa12.46□□□□□ -0.41
PTCH1-208ENST00000430669 SART1O43290 800 aaKnown RBP12.46□□□□□ -0.41
PTCH1-208ENST00000430669 CALB1P05937 261 aa12.46□□□□□ -0.41
PTCH1-208ENST00000430669 COG2Q14746 738 aa12.46□□□□□ -0.41
PTCH1-208ENST00000430669 CLDN3O15551 220 aa12.46□□□□□ -0.41
PTCH1-208ENST00000430669 TGFB2P61812 414 aa12.46□□□□□ -0.41
PTCH1-208ENST00000430669 MAPK6Q16659 721 aa12.46□□□□□ -0.41
PTCH1-208ENST00000430669 EDRF1Q3B7T1 1238 aa12.46□□□□□ -0.41
PTCH1-208ENST00000430669 TBC1D10BQ4KMP7 808 aaPredicted RBP12.46□□□□□ -0.41
PTCH1-208ENST00000430669 GMCL1Q96IK5 515 aa12.46□□□□□ -0.41
PTCH1-208ENST00000430669 MMP19Q99542 508 aa12.46□□□□□ -0.41
PTCH1-208ENST00000430669 MRPL4Q9BYD3 311 aaKnown RBP12.46□□□□□ -0.41
PTCH1-208ENST00000430669 MYOZ2Q9NPC6 264 aa12.46□□□□□ -0.41
PTCH1-208ENST00000430669 ATF5Q9Y2D1 282 aaPredicted RBP12.46□□□□□ -0.41
PTCH1-208ENST00000430669 YWHABP31946 246 aaKnown RBP12.46□□□□□ -0.41
PTCH1-208ENST00000430669 MXRA7P84157 204 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms