RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 INPP5BP32019 993 aa9.96□□□□□ -0.81
LIMCH1-202ENST00000381753 ADD2P35612 726 aa9.96□□□□□ -0.81
LIMCH1-202ENST00000381753 ERVK-9P63128 1117 aa9.96□□□□□ -0.81
LIMCH1-202ENST00000381753 ERVK-24P63145 666 aa9.96□□□□□ -0.81
LIMCH1-202ENST00000381753 DAB2P98082 770 aa9.96□□□□□ -0.81
LIMCH1-202ENST00000381753 TMEM132DQ14C87 1099 aa9.96□□□□□ -0.81
LIMCH1-202ENST00000381753 SF3B3Q15393 1217 aaKnown RBP9.96□□□□□ -0.81
LIMCH1-202ENST00000381753 PI16Q6UXB8 463 aa9.96□□□□□ -0.81
LIMCH1-202ENST00000381753 KIAA1324Q6UXG2 1013 aaKnown RBP9.96□□□□□ -0.81
LIMCH1-202ENST00000381753 SYMPKQ92797 1274 aaKnown RBP9.96□□□□□ -0.81
LIMCH1-202ENST00000381753 ATP6V1E2Q96A05 226 aa9.96□□□□□ -0.81
LIMCH1-202ENST00000381753 KANSL3Q9P2N6 904 aa9.96□□□□□ -0.81
LIMCH1-202ENST00000381753 TACC3Q9Y6A5 838 aa9.96□□□□□ -0.81
LIMCH1-202ENST00000381753 BZW2Q9Y6E2 419 aaKnown RBP9.96□□□□□ -0.81
LIMCH1-202ENST00000381753 SETD1BQ9UPS6 1966 aaKnown RBP9.96□□□□□ -0.81
LIMCH1-202ENST00000381753 CASQ1P31415 396 aa9.96□□□□□ -0.81
LIMCH1-202ENST00000381753 DDIT3P35638 169 aa9.96□□□□□ -0.81
LIMCH1-202ENST00000381753 MAPK9P45984 424 aa9.96□□□□□ -0.81
LIMCH1-202ENST00000381753 MRE11P49959 708 aa9.96□□□□□ -0.81
LIMCH1-202ENST00000381753 VGLL4Q14135 290 aa9.96□□□□□ -0.81
LIMCH1-202ENST00000381753 UAP1L1Q3KQV9 507 aa9.96□□□□□ -0.81
LIMCH1-202ENST00000381753 TBCKQ8TEA7 893 aa9.96□□□□□ -0.81
LIMCH1-202ENST00000381753 FAM84BQ96KN1 310 aaPredicted RBP9.96□□□□□ -0.81
LIMCH1-202ENST00000381753 ASCC2Q9H1I8 757 aaPredicted RBP9.96□□□□□ -0.81
LIMCH1-202ENST00000381753 CYP4F11Q9HBI6 524 aa9.96□□□□□ -0.81
LIMCH1-202ENST00000381753 PLA2G4CQ9UP65 541 aa9.96□□□□□ -0.81
LIMCH1-202ENST00000381753 DIP2BQ9P265 1576 aa9.96□□□□□ -0.81
LIMCH1-202ENST00000381753 ADCY5O95622 1261 aa9.96□□□□□ -0.82
LIMCH1-202ENST00000381753 CCL5P13501 91 aa9.96□□□□□ -0.82
LIMCH1-202ENST00000381753 RPS6KB1P23443 525 aa9.96□□□□□ -0.82
LIMCH1-202ENST00000381753 ADORA2BP29275 332 aa9.96□□□□□ -0.82
LIMCH1-202ENST00000381753 PRELPP51888 382 aa9.96□□□□□ -0.82
LIMCH1-202ENST00000381753 ELAVL2Q12926 359 aaKnown RBP9.96□□□□□ -0.82
LIMCH1-202ENST00000381753 MAPK8IP2Q13387 824 aaPredicted RBP9.96□□□□□ -0.82
LIMCH1-202ENST00000381753 TAOK1Q7L7X3 1001 aa9.96□□□□□ -0.82
LIMCH1-202ENST00000381753 UBL4BQ8N7F7 174 aa9.96□□□□□ -0.82
LIMCH1-202ENST00000381753 TUBE1Q9UJT0 475 aa9.96□□□□□ -0.82
LIMCH1-202ENST00000381753 GOLGA8SH3BPF8 625 aa9.96□□□□□ -0.82
LIMCH1-202ENST00000381753 KDM1AO60341 852 aa9.96□□□□□ -0.82
LIMCH1-202ENST00000381753 PRMT3O60678 531 aa9.96□□□□□ -0.82
LIMCH1-202ENST00000381753 SEPT6Q14141 434 aa9.96□□□□□ -0.82
LIMCH1-202ENST00000381753 PTK2BQ14289 1009 aa9.96□□□□□ -0.82
LIMCH1-202ENST00000381753 CEP95Q96GE4 821 aa9.96□□□□□ -0.82
LIMCH1-202ENST00000381753 PLA2R1Q13018 1463 aa9.96□□□□□ -0.82
LIMCH1-202ENST00000381753 HBP1O60381 514 aa9.96□□□□□ -0.82
LIMCH1-202ENST00000381753 GNA14O95837 355 aa9.96□□□□□ -0.82
LIMCH1-202ENST00000381753 PGK1P00558 417 aa9.96□□□□□ -0.82
LIMCH1-202ENST00000381753 P4HBP07237 508 aaKnown RBP9.96□□□□□ -0.82
LIMCH1-202ENST00000381753 ARHGEF7Q14155 803 aa9.96□□□□□ -0.82
LIMCH1-202ENST00000381753 COLEC12Q5KU26 742 aa9.96□□□□□ -0.82
LIMCH1-202ENST00000381753 NOL9Q5SY16 702 aaKnown RBP9.96□□□□□ -0.82
LIMCH1-202ENST00000381753 SPATA18Q8TC71 538 aa9.96□□□□□ -0.82
LIMCH1-202ENST00000381753 BRD9Q9H8M2 597 aa9.96□□□□□ -0.82
LIMCH1-202ENST00000381753 SAMD15Q9P1V8 674 aa9.96□□□□□ -0.82
LIMCH1-202ENST00000381753 PPME1Q9Y570 386 aa9.96□□□□□ -0.82
LIMCH1-202ENST00000381753 KIF1BO60333 1816 aa9.95□□□□□ -0.82
LIMCH1-202ENST00000381753 PNMA6EA0A0J9YXQ4 647 aa9.95□□□□□ -0.82
LIMCH1-202ENST00000381753 HDLBPQ00341 1268 aaKnown RBP9.95□□□□□ -0.82
LIMCH1-202ENST00000381753 THEMIS2Q5TEJ8 643 aa9.95□□□□□ -0.82
LIMCH1-202ENST00000381753 NOTUMQ6P988 496 aa9.95□□□□□ -0.82
LIMCH1-202ENST00000381753 TMC6Q7Z403 805 aa9.95□□□□□ -0.82
LIMCH1-202ENST00000381753 BHMTQ93088 406 aa9.95□□□□□ -0.82
LIMCH1-202ENST00000381753 PCDHA4Q9UN74 947 aa9.95□□□□□ -0.82
LIMCH1-202ENST00000381753 CCDC66A2RUB6 948 aa9.95□□□□□ -0.82
LIMCH1-202ENST00000381753 CAP2P40123 477 aa9.95□□□□□ -0.82
LIMCH1-202ENST00000381753 HTRA3P83110 453 aa9.95□□□□□ -0.82
LIMCH1-202ENST00000381753 MOB2Q70IA6 237 aa9.95□□□□□ -0.82
LIMCH1-202ENST00000381753 CCDC25Q86WR0 208 aa9.95□□□□□ -0.82
LIMCH1-202ENST00000381753 PPP4R1Q8TF05 950 aa9.95□□□□□ -0.82
LIMCH1-202ENST00000381753 XPO6Q96QU8 1125 aaKnown RBP9.95□□□□□ -0.82
LIMCH1-202ENST00000381753 ATXN3LQ9H3M9 355 aa9.95□□□□□ -0.82
LIMCH1-202ENST00000381753 SP110Q9HB58 689 aa9.95□□□□□ -0.82
LIMCH1-202ENST00000381753 NDRG2Q9UN36 371 aaKnown RBP9.95□□□□□ -0.82
LIMCH1-202ENST00000381753 PCDHA10Q9Y5I2 948 aa9.95□□□□□ -0.82
LIMCH1-202ENST00000381753 ESRRBO95718 433 aa9.95□□□□□ -0.82
LIMCH1-202ENST00000381753 AKR1B1P15121 316 aa9.95□□□□□ -0.82
LIMCH1-202ENST00000381753 HARS2P49590 506 aaKnown RBP9.95□□□□□ -0.82
LIMCH1-202ENST00000381753 MFAP3P55082 362 aa9.95□□□□□ -0.82
LIMCH1-202ENST00000381753 CREMQ03060 361 aa9.95□□□□□ -0.82
LIMCH1-202ENST00000381753 MTERF4Q7Z6M4 381 aaKnown RBP9.95□□□□□ -0.82
LIMCH1-202ENST00000381753 CIPCQ9C0C6 399 aa9.95□□□□□ -0.82
LIMCH1-202ENST00000381753 ABHD16BQ9H3Z7 469 aa9.95□□□□□ -0.82
LIMCH1-202ENST00000381753 MRPS23Q9Y3D9 190 aaKnown RBP9.95□□□□□ -0.82
LIMCH1-202ENST00000381753 RPTORQ8N122 1335 aa9.95□□□□□ -0.82
LIMCH1-202ENST00000381753 TULP4Q9NRJ4 1543 aa9.95□□□□□ -0.82
LIMCH1-202ENST00000381753 NR3C2P08235 984 aa9.95□□□□□ -0.82
LIMCH1-202ENST00000381753 GHRP10912 638 aa9.95□□□□□ -0.82
LIMCH1-202ENST00000381753 NSFP46459 744 aaKnown RBP9.95□□□□□ -0.82
LIMCH1-202ENST00000381753 CTXN3Q4LDR2 81 aa9.95□□□□□ -0.82
LIMCH1-202ENST00000381753 PLPP4Q5VZY2 271 aa9.95□□□□□ -0.82
LIMCH1-202ENST00000381753 EFCAB12Q6NXP0 572 aa9.95□□□□□ -0.82
LIMCH1-202ENST00000381753 SPATC1LQ9H0A9 340 aa9.95□□□□□ -0.82
LIMCH1-202ENST00000381753 ABI2Q9NYB9 513 aaPredicted RBP9.95□□□□□ -0.82
LIMCH1-202ENST00000381753 ADGBQ8N7X0 1667 aa9.94□□□□□ -0.82
LIMCH1-202ENST00000381753 TACC1O75410 805 aa9.94□□□□□ -0.82
LIMCH1-202ENST00000381753 FGAP02671 866 aa9.94□□□□□ -0.82
LIMCH1-202ENST00000381753 ATP1A1P05023 1023 aaKnown RBP9.94□□□□□ -0.82
LIMCH1-202ENST00000381753 PMLP29590 882 aa9.94□□□□□ -0.82
LIMCH1-202ENST00000381753 CALCOCO2Q13137 446 aa9.94□□□□□ -0.82
LIMCH1-202ENST00000381753 ACVR2BQ13705 512 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms