RNA–Protein interactions for RNA: ENST00000373019.4

SF3A3-201, Transcript of splicing factor 3a subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A3, Length 3,673 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-201ENST00000373019 SMYD1Q8NB12 490 aa10.36□□□□□ -0.75
SF3A3-201ENST00000373019 IQCDQ96DY2 449 aa10.36□□□□□ -0.75
SF3A3-201ENST00000373019 CRAMP1Q96RY5 1269 aa10.36□□□□□ -0.75
SF3A3-201ENST00000373019 TSPAN18Q96SJ8 248 aa10.36□□□□□ -0.75
SF3A3-201ENST00000373019 DENND2DQ9H6A0 471 aaPredicted RBP10.36□□□□□ -0.75
SF3A3-201ENST00000373019 FAM207AQ9NSI2 230 aaPredicted RBP10.36□□□□□ -0.75
SF3A3-201ENST00000373019 SPEF2Q9C093 1822 aa10.35□□□□□ -0.75
SF3A3-201ENST00000373019 MYH4Q9Y623 1939 aa10.35□□□□□ -0.75
SF3A3-201ENST00000373019 TTI1O43156 1089 aa10.35□□□□□ -0.75
SF3A3-201ENST00000373019 LRRC14Q15048 493 aa10.35□□□□□ -0.75
SF3A3-201ENST00000373019 SPDYCQ5MJ68 293 aa10.35□□□□□ -0.75
SF3A3-201ENST00000373019 HOOK3Q86VS8 718 aa10.35□□□□□ -0.75
SF3A3-201ENST00000373019 WASF1Q92558 559 aa10.35□□□□□ -0.75
SF3A3-201ENST00000373019 CNOT6LQ96LI5 555 aaKnown RBP10.35□□□□□ -0.75
SF3A3-201ENST00000373019 DDX50Q9BQ39 737 aaKnown RBP10.35□□□□□ -0.75
SF3A3-201ENST00000373019 CELF4Q9BZC1 486 aaKnown RBP10.35□□□□□ -0.75
SF3A3-201ENST00000373019 CCDC87Q9NVE4 849 aa10.35□□□□□ -0.75
SF3A3-201ENST00000373019 RMND1Q9NWS8 449 aa10.35□□□□□ -0.75
SF3A3-201ENST00000373019 MAGEC2Q9UBF1 373 aaPredicted RBP10.35□□□□□ -0.75
SF3A3-201ENST00000373019 TBC1D30Q9Y2I9 924 aa10.35□□□□□ -0.75
SF3A3-201ENST00000373019 USP20Q9Y2K6 914 aa10.35□□□□□ -0.75
SF3A3-201ENST00000373019 PCDH11YQ9BZA8 1340 aa10.35□□□□□ -0.75
SF3A3-201ENST00000373019 PHRF1Q9P1Y6 1649 aaKnown RBP10.35□□□□□ -0.75
SF3A3-201ENST00000373019 CES2O00748 559 aa10.35□□□□□ -0.75
SF3A3-201ENST00000373019 TPD52L2O43399 206 aaKnown RBP10.35□□□□□ -0.75
SF3A3-201ENST00000373019 KLRC4O43908 158 aa10.35□□□□□ -0.75
SF3A3-201ENST00000373019 ETS2P15036 469 aa10.35□□□□□ -0.75
SF3A3-201ENST00000373019 TSHZ1Q6ZSZ6 1077 aa10.35□□□□□ -0.75
SF3A3-201ENST00000373019 ECHDC2Q86YB7 292 aa10.35□□□□□ -0.75
SF3A3-201ENST00000373019 CSGALNACT2Q8N6G5 542 aa10.35□□□□□ -0.75
SF3A3-201ENST00000373019 ACTRT1Q8TDG2 376 aa10.35□□□□□ -0.75
SF3A3-201ENST00000373019 NOC4LQ9BVI4 516 aaKnown RBP10.35□□□□□ -0.75
SF3A3-201ENST00000373019 FAM114A2Q9NRY5 505 aa10.35□□□□□ -0.75
SF3A3-201ENST00000373019 TLDC2A0PJX2 215 aa10.35□□□□□ -0.75
SF3A3-201ENST00000373019 MAGEA13PA6NCF6 341 aa10.35□□□□□ -0.75
SF3A3-201ENST00000373019 KCNK3O14649 394 aa10.35□□□□□ -0.75
SF3A3-201ENST00000373019 PTCD1O75127 700 aaKnown RBP10.35□□□□□ -0.75
SF3A3-201ENST00000373019 TMCC1O94876 653 aa10.35□□□□□ -0.75
SF3A3-201ENST00000373019 BAG6P46379 1132 aa10.35□□□□□ -0.75
SF3A3-201ENST00000373019 POU5F1Q01860 360 aaKnown RBP10.35□□□□□ -0.75
SF3A3-201ENST00000373019 EN1Q05925 392 aaPredicted RBP10.35□□□□□ -0.75
SF3A3-201ENST00000373019 RASIP1Q5U651 963 aa10.35□□□□□ -0.75
SF3A3-201ENST00000373019 RRAGAQ7L523 313 aa10.35□□□□□ -0.75
SF3A3-201ENST00000373019 SCG3Q8WXD2 468 aaKnown RBP10.35□□□□□ -0.75
SF3A3-201ENST00000373019 SLC7A6OSQ96CW6 309 aaPredicted RBP10.35□□□□□ -0.75
SF3A3-201ENST00000373019 LAMB4A4D0S4 1761 aa10.34□□□□□ -0.75
SF3A3-201ENST00000373019 NFAT5O94916 1531 aa10.34□□□□□ -0.75
SF3A3-201ENST00000373019 ECE2O60344 883 aa10.34□□□□□ -0.75
SF3A3-201ENST00000373019 PFDN1O60925 122 aa10.34□□□□□ -0.75
SF3A3-201ENST00000373019 CYP11B2P19099 503 aa10.34□□□□□ -0.75
SF3A3-201ENST00000373019 OCRLQ01968 901 aa10.34□□□□□ -0.75
SF3A3-201ENST00000373019 CBX3Q13185 183 aa10.34□□□□□ -0.75
SF3A3-201ENST00000373019 TCIRG1Q13488 830 aa10.34□□□□□ -0.75
SF3A3-201ENST00000373019 GIT2Q14161 759 aa10.34□□□□□ -0.75
SF3A3-201ENST00000373019 ZNF174Q15697 407 aa10.34□□□□□ -0.75
SF3A3-201ENST00000373019 FAM114A1Q8IWE2 563 aa10.34□□□□□ -0.75
SF3A3-201ENST00000373019 SMC1BQ8NDV3 1235 aa10.34□□□□□ -0.75
SF3A3-201ENST00000373019 TMEM87BQ96K49 555 aa10.34□□□□□ -0.75
SF3A3-201ENST00000373019 GBP5Q96PP8 586 aa10.34□□□□□ -0.75
SF3A3-201ENST00000373019 PDP2Q9P2J9 529 aa10.34□□□□□ -0.75
SF3A3-201ENST00000373019 SEC63Q9UGP8 760 aaKnown RBP10.34□□□□□ -0.75
SF3A3-201ENST00000373019 CCDC15Q0P6D6 951 aa10.34□□□□□ -0.75
SF3A3-201ENST00000373019 PTGDRQ13258 359 aa10.34□□□□□ -0.75
SF3A3-201ENST00000373019 CERKLQ49MI3 558 aaPredicted RBP10.34□□□□□ -0.75
SF3A3-201ENST00000373019 KHDC1Q4VXA5 237 aaKnown RBP10.34□□□□□ -0.75
SF3A3-201ENST00000373019 ANKRD40Q6AI12 368 aa10.34□□□□□ -0.75
SF3A3-201ENST00000373019 PI16Q6UXB8 463 aa10.34□□□□□ -0.75
SF3A3-201ENST00000373019 DZIP3Q86Y13 1208 aaKnown RBP10.34□□□□□ -0.75
SF3A3-201ENST00000373019 CRACR2BQ8N4Y2 399 aaPredicted RBP10.34□□□□□ -0.75
SF3A3-201ENST00000373019 ZBTB8BQ8NAP8 495 aaPredicted RBP10.34□□□□□ -0.75
SF3A3-201ENST00000373019 AGBL1Q96MI9 1066 aa10.34□□□□□ -0.75
SF3A3-201ENST00000373019 TBC1D10AQ9BXI6 508 aa10.34□□□□□ -0.75
SF3A3-201ENST00000373019 PABPC3Q9H361 631 aaKnown RBP10.34□□□□□ -0.75
SF3A3-201ENST00000373019 GOLPH3Q9H4A6 298 aa10.34□□□□□ -0.75
SF3A3-201ENST00000373019 ZDHHC18Q9NUE0 388 aa10.34□□□□□ -0.75
SF3A3-201ENST00000373019 hCG_2014768A0A024R1R8 64 aa10.34□□□□□ -0.75
SF3A3-201ENST00000373019 SMIM23A6NLE4 172 aa10.34□□□□□ -0.75
SF3A3-201ENST00000373019 GPAA1O43292 621 aa10.34□□□□□ -0.75
SF3A3-201ENST00000373019 AGTP01019 485 aa10.34□□□□□ -0.75
SF3A3-201ENST00000373019 ASLP04424 464 aa10.34□□□□□ -0.75
SF3A3-201ENST00000373019 T-ENOLP0DO92 83 aa10.34□□□□□ -0.75
SF3A3-201ENST00000373019 MYL6BP14649 208 aa10.34□□□□□ -0.75
SF3A3-201ENST00000373019 VHLP40337 213 aa10.34□□□□□ -0.75
SF3A3-201ENST00000373019 SNX30Q5VWJ9 437 aa10.34□□□□□ -0.75
SF3A3-201ENST00000373019 RNF43Q68DV7 783 aa10.34□□□□□ -0.75
SF3A3-201ENST00000373019 FAM47EQ6ZV65 393 aa10.34□□□□□ -0.75
SF3A3-201ENST00000373019 GIMAP8Q8ND71 665 aaPredicted RBP10.34□□□□□ -0.75
SF3A3-201ENST00000373019 SH3TC2Q8TF17 1288 aa10.34□□□□□ -0.75
SF3A3-201ENST00000373019 ANKS1AQ92625 1134 aa10.34□□□□□ -0.75
SF3A3-201ENST00000373019 CORO1BQ9BR76 489 aa10.34□□□□□ -0.75
SF3A3-201ENST00000373019 DCLRE1BQ9H816 532 aa10.34□□□□□ -0.75
SF3A3-201ENST00000373019 CIDEBQ9UHD4 219 aa10.34□□□□□ -0.75
SF3A3-201ENST00000373019 COMMD3-BMI1R4GMX3 469 aa10.34□□□□□ -0.75
SF3A3-201ENST00000373019 NID2Q14112 1375 aa10.33□□□□□ -0.76
SF3A3-201ENST00000373019 SSU72P8A0A1W2PR75 194 aa10.33□□□□□ -0.76
SF3A3-201ENST00000373019 RGS16O15492 202 aaPredicted RBP10.33□□□□□ -0.76
SF3A3-201ENST00000373019 TLR2O60603 784 aa10.33□□□□□ -0.76
SF3A3-201ENST00000373019 EPHB2P29323 1055 aa10.33□□□□□ -0.76
SF3A3-201ENST00000373019 LIFRP42702 1097 aa10.33□□□□□ -0.76
SF3A3-201ENST00000373019 ATP2C1P98194 919 aaPredicted RBP10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms