RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 TRIM55Q9BYV6 548 aa12.38□□□□□ -0.43
VPS39-201ENST00000318006 CD209Q9NNX6 404 aa12.38□□□□□ -0.43
VPS39-201ENST00000318006 TRPC6Q9Y210 931 aa12.38□□□□□ -0.43
VPS39-201ENST00000318006 DIS3Q9Y2L1 958 aaKnown RBP12.38□□□□□ -0.43
VPS39-201ENST00000318006 GSG1L2A8MUP6 293 aa12.38□□□□□ -0.43
VPS39-201ENST00000318006 RAD17O75943 681 aa12.38□□□□□ -0.43
VPS39-201ENST00000318006 ADRA2BP18089 450 aa12.38□□□□□ -0.43
VPS39-201ENST00000318006 RXRBP28702 533 aa12.38□□□□□ -0.43
VPS39-201ENST00000318006 RWDD2BP57060 319 aa12.38□□□□□ -0.43
VPS39-201ENST00000318006 TAB3Q8N5C8 712 aaPredicted RBP12.38□□□□□ -0.43
VPS39-201ENST00000318006 ZNF653Q96CK0 615 aa12.38□□□□□ -0.43
VPS39-201ENST00000318006 TRIM11Q96F44 468 aa12.38□□□□□ -0.43
VPS39-201ENST00000318006 STAMBPL1Q96FJ0 436 aa12.38□□□□□ -0.43
VPS39-201ENST00000318006 EIF2AQ9BY44 585 aaKnown RBP12.38□□□□□ -0.43
VPS39-201ENST00000318006 SGK1O00141 431 aa12.37□□□□□ -0.43
VPS39-201ENST00000318006 ACSL3O95573 720 aa12.37□□□□□ -0.43
VPS39-201ENST00000318006 DLATP10515 647 aaKnown RBP12.37□□□□□ -0.43
VPS39-201ENST00000318006 MYL7Q01449 175 aa12.37□□□□□ -0.43
VPS39-201ENST00000318006 UBE2SQ16763 222 aa12.37□□□□□ -0.43
VPS39-201ENST00000318006 AOC3Q16853 763 aa12.37□□□□□ -0.43
VPS39-201ENST00000318006 SULF1Q8IWU6 871 aa12.37□□□□□ -0.43
VPS39-201ENST00000318006 ZNF710Q8N1W2 664 aa12.37□□□□□ -0.43
VPS39-201ENST00000318006 METTL13Q8N6R0 699 aa12.37□□□□□ -0.43
VPS39-201ENST00000318006 ZNF579Q8NAF0 562 aaKnown RBP12.37□□□□□ -0.43
VPS39-201ENST00000318006 DISC1Q9NRI5 854 aa12.37□□□□□ -0.43
VPS39-201ENST00000318006 LGALS16A8MUM7 142 aa12.37□□□□□ -0.43
VPS39-201ENST00000318006 FGGP02679 453 aa12.37□□□□□ -0.43
VPS39-201ENST00000318006 MAPK4P31152 587 aa12.37□□□□□ -0.43
VPS39-201ENST00000318006 GUCY1A3Q02108 690 aa12.37□□□□□ -0.43
VPS39-201ENST00000318006 CDC37Q16543 378 aaPredicted RBP12.37□□□□□ -0.43
VPS39-201ENST00000318006 PFKFB3Q16875 520 aaPredicted RBP12.37□□□□□ -0.43
VPS39-201ENST00000318006 CCDC92Q53HC0 331 aaPredicted RBP12.37□□□□□ -0.43
VPS39-201ENST00000318006 LRRC37BQ96QE4 947 aa12.37□□□□□ -0.43
VPS39-201ENST00000318006 NACC1Q96RE7 527 aa12.37□□□□□ -0.43
VPS39-201ENST00000318006 TMEM47Q9BQJ4 181 aa12.37□□□□□ -0.43
VPS39-201ENST00000318006 TRAIPQ9BWF2 469 aa12.37□□□□□ -0.43
VPS39-201ENST00000318006 PALMO75781 387 aa12.37□□□□□ -0.43
VPS39-201ENST00000318006 POLGP54098 1239 aaPredicted RBP12.37□□□□□ -0.43
VPS39-201ENST00000318006 BPIFB4P59827 614 aa12.37□□□□□ -0.43
VPS39-201ENST00000318006 CACNB1Q02641 598 aaPredicted RBP12.37□□□□□ -0.43
VPS39-201ENST00000318006 RSBN1LQ6PCB5 846 aaPredicted RBP12.37□□□□□ -0.43
VPS39-201ENST00000318006 FAM47EQ6ZV65 393 aa12.37□□□□□ -0.43
VPS39-201ENST00000318006 ATP6V0A1Q93050 837 aa12.37□□□□□ -0.43
VPS39-201ENST00000318006 MIS12Q9H081 205 aa12.37□□□□□ -0.43
VPS39-201ENST00000318006 ARHGAP10A1A4S6 786 aa12.37□□□□□ -0.43
VPS39-201ENST00000318006 WDR91A4D1P6 747 aa12.37□□□□□ -0.43
VPS39-201ENST00000318006 PSMD2Q13200 908 aa12.37□□□□□ -0.43
VPS39-201ENST00000318006 ALKBH5Q6P6C2 394 aaKnown RBP12.37□□□□□ -0.43
VPS39-201ENST00000318006 GADL1Q6ZQY3 521 aa12.37□□□□□ -0.43
VPS39-201ENST00000318006 ZNF473Q8WTR7 871 aaKnown RBP12.37□□□□□ -0.43
VPS39-201ENST00000318006 SUGCTQ9HAC7 445 aa12.37□□□□□ -0.43
VPS39-201ENST00000318006 NRBP2Q9NSY0 501 aa12.37□□□□□ -0.43
VPS39-201ENST00000318006 ADAMTS1Q9UHI8 967 aa12.37□□□□□ -0.43
VPS39-201ENST00000318006 ZFP69BQ9UJL9 534 aa12.37□□□□□ -0.43
VPS39-201ENST00000318006 BAG5Q9UL15 447 aa12.37□□□□□ -0.43
VPS39-201ENST00000318006 IQSEC2Q5JU85 1478 aa12.37□□□□□ -0.43
VPS39-201ENST00000318006 PXDNLA1KZ92 1463 aa12.36□□□□□ -0.43
VPS39-201ENST00000318006 PLEKHG2Q9H7P9 1386 aa12.36□□□□□ -0.43
VPS39-201ENST00000318006 ENO4A6NNW6 628 aa12.36□□□□□ -0.43
VPS39-201ENST00000318006 SORBS3O60504 671 aa12.36□□□□□ -0.43
VPS39-201ENST00000318006 CDC27P30260 824 aa12.36□□□□□ -0.43
VPS39-201ENST00000318006 POLR2BP30876 1174 aaKnown RBP12.36□□□□□ -0.43
VPS39-201ENST00000318006 PSMC2P35998 433 aaKnown RBP12.36□□□□□ -0.43
VPS39-201ENST00000318006 MDH1P40925 334 aaKnown RBP12.36□□□□□ -0.43
VPS39-201ENST00000318006 MFAP3P55082 362 aa12.36□□□□□ -0.43
VPS39-201ENST00000318006 ATG16L1Q676U5 607 aa12.36□□□□□ -0.43
VPS39-201ENST00000318006 SGMS1Q86VZ5 419 aa12.36□□□□□ -0.43
VPS39-201ENST00000318006 SLC17A8Q8NDX2 589 aa12.36□□□□□ -0.43
VPS39-201ENST00000318006 MAML1Q92585 1016 aa12.36□□□□□ -0.43
VPS39-201ENST00000318006 ARHGEF1Q92888 912 aaKnown RBP12.36□□□□□ -0.43
VPS39-201ENST00000318006 NUDCD1Q96RS6 583 aa12.36□□□□□ -0.43
VPS39-201ENST00000318006 HAUS2Q9NVX0 235 aa12.36□□□□□ -0.43
VPS39-201ENST00000318006 GRID2IPA4D2P6 1211 aa12.36□□□□□ -0.43
VPS39-201ENST00000318006 LRRIQ4A6NIV6 560 aa12.36□□□□□ -0.43
VPS39-201ENST00000318006 HNRNPCP07910 306 aaKnown RBP eCLIP12.36□□□□□ -0.43
VPS39-201ENST00000318006 PTK2Q05397 1052 aa12.36□□□□□ -0.43
VPS39-201ENST00000318006 NR1H3Q13133 447 aa12.36□□□□□ -0.43
VPS39-201ENST00000318006 TAF12Q16514 161 aa12.36□□□□□ -0.43
VPS39-201ENST00000318006 ARHGAP27Q6ZUM4 889 aa12.36□□□□□ -0.43
VPS39-201ENST00000318006 NCAPG2Q86XI2 1143 aa12.36□□□□□ -0.43
VPS39-201ENST00000318006 POMGNT1Q8WZA1 660 aa12.36□□□□□ -0.43
VPS39-201ENST00000318006 TAF1DQ9H5J8 278 aaPredicted RBP12.36□□□□□ -0.43
VPS39-201ENST00000318006 SNX24Q9Y343 169 aa12.36□□□□□ -0.43
VPS39-201ENST00000318006 TMEM131LA2VDJ0 1609 aa12.36□□□□□ -0.43
VPS39-201ENST00000318006 A0A0G2JND7 137 aa12.36□□□□□ -0.43
VPS39-201ENST00000318006 STXBP3O00186 592 aa12.36□□□□□ -0.43
VPS39-201ENST00000318006 EAPPQ56P03 285 aaPredicted RBP12.36□□□□□ -0.43
VPS39-201ENST00000318006 DPY19L2Q6NUT2 758 aa12.36□□□□□ -0.43
VPS39-201ENST00000318006 TMEM179Q6ZVK1 233 aa12.36□□□□□ -0.43
VPS39-201ENST00000318006 TEX2Q8IWB9 1127 aa12.36□□□□□ -0.43
VPS39-201ENST00000318006 FAM186BQ8IYM0 893 aa12.36□□□□□ -0.43
VPS39-201ENST00000318006 DACT3Q96B18 629 aaPredicted RBP12.36□□□□□ -0.43
VPS39-201ENST00000318006 DCPSQ96C86 337 aaKnown RBP12.36□□□□□ -0.43
VPS39-201ENST00000318006 CCT8L2Q96SF2 557 aa12.36□□□□□ -0.43
VPS39-201ENST00000318006 GSTA1P08263 222 aa12.36□□□□□ -0.43
VPS39-201ENST00000318006 GSTA2P09210 222 aa12.36□□□□□ -0.43
VPS39-201ENST00000318006 HDAC6Q9UBN7 1215 aa12.36□□□□□ -0.43
VPS39-201ENST00000318006 EIF4E1BA6NMX2 242 aaKnown RBP12.35□□□□□ -0.43
VPS39-201ENST00000318006 H7C0C1 242 aa12.35□□□□□ -0.43
VPS39-201ENST00000318006 IPO5O00410 1097 aaKnown RBP12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms