RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 SPAG5Q96R06 1193 aa14.79□□□□□ -0.04
SHMT2-222ENST00000555774 OLFML3Q9NRN5 406 aa14.79□□□□□ -0.04
SHMT2-222ENST00000555774 SMARCAL1Q9NZC9 954 aa14.79□□□□□ -0.04
SHMT2-222ENST00000555774 FAM198AQ9UFP1 575 aa14.79□□□□□ -0.04
SHMT2-222ENST00000555774 VAV3Q9UKW4 847 aa14.79□□□□□ -0.04
SHMT2-222ENST00000555774 RRP15Q9Y3B9 282 aaKnown RBP14.79□□□□□ -0.04
SHMT2-222ENST00000555774 COL2A1P02458 1487 aaPredicted RBP14.79□□□□□ -0.04
SHMT2-222ENST00000555774 DDTLA6NHG4 134 aaPredicted RBP14.78□□□□□ -0.04
SHMT2-222ENST00000555774 EIF3DO15371 548 aaKnown RBP eCLIP14.78□□□□□ -0.04
SHMT2-222ENST00000555774 RAD21O60216 631 aa14.78□□□□□ -0.04
SHMT2-222ENST00000555774 SLC15A2Q16348 729 aa14.78□□□□□ -0.04
SHMT2-222ENST00000555774 MEX3CQ5U5Q3 659 aaKnown RBP14.78□□□□□ -0.04
SHMT2-222ENST00000555774 P2RX7Q99572 595 aaKnown RBP14.78□□□□□ -0.04
SHMT2-222ENST00000555774 INTUQ9ULD6 942 aa14.78□□□□□ -0.04
SHMT2-222ENST00000555774 FAM86B1E9PN63 330 aa14.78□□□□□ -0.04
SHMT2-222ENST00000555774 MSH4O15457 936 aa14.78□□□□□ -0.04
SHMT2-222ENST00000555774 FLOT1O75955 427 aa14.78□□□□□ -0.04
SHMT2-222ENST00000555774 GFPT2O94808 682 aa14.78□□□□□ -0.04
SHMT2-222ENST00000555774 FTCDO95954 541 aa14.78□□□□□ -0.04
SHMT2-222ENST00000555774 NDUFB10O96000 172 aa14.78□□□□□ -0.04
SHMT2-222ENST00000555774 FAM86B2P0C5J1 330 aa14.78□□□□□ -0.04
SHMT2-222ENST00000555774 PON1P27169 355 aa14.78□□□□□ -0.04
SHMT2-222ENST00000555774 HOXD13P35453 343 aa14.78□□□□□ -0.04
SHMT2-222ENST00000555774 EPHA7Q15375 998 aa14.78□□□□□ -0.04
SHMT2-222ENST00000555774 ABCB5Q2M3G0 1257 aa14.78□□□□□ -0.04
SHMT2-222ENST00000555774 VPS36Q86VN1 386 aa14.78□□□□□ -0.04
SHMT2-222ENST00000555774 MS4A14Q96JA4 679 aa14.78□□□□□ -0.04
SHMT2-222ENST00000555774 NENFQ9UMX5 172 aa14.78□□□□□ -0.04
SHMT2-222ENST00000555774 ASTN1O14525 1302 aa14.78□□□□□ -0.04
SHMT2-222ENST00000555774 UBE4BO95155 1302 aa14.78□□□□□ -0.04
SHMT2-222ENST00000555774 AFF2P51816 1311 aa14.78□□□□□ -0.04
SHMT2-222ENST00000555774 A0A0A6YYK5 440 aaPredicted RBP14.77□□□□□ -0.04
SHMT2-222ENST00000555774 MYO1CO00159 1063 aa14.77□□□□□ -0.04
SHMT2-222ENST00000555774 NR3C1P04150 777 aa14.77□□□□□ -0.04
SHMT2-222ENST00000555774 MYBP10242 640 aa14.77□□□□□ -0.04
SHMT2-222ENST00000555774 BMP3P12645 472 aa14.77□□□□□ -0.04
SHMT2-222ENST00000555774 PSMC6P62333 389 aa14.77□□□□□ -0.04
SHMT2-222ENST00000555774 PTK2Q05397 1052 aa14.77□□□□□ -0.04
SHMT2-222ENST00000555774 RPS6KA1Q15418 735 aa14.77□□□□□ -0.04
SHMT2-222ENST00000555774 SH3BP5LQ7L8J4 393 aa14.77□□□□□ -0.04
SHMT2-222ENST00000555774 WHAMMQ8TF30 809 aa14.77□□□□□ -0.04
SHMT2-222ENST00000555774 TUFT1Q9NNX1 390 aa14.77□□□□□ -0.04
SHMT2-222ENST00000555774 TMEM59LQ9UK28 342 aa14.77□□□□□ -0.04
SHMT2-222ENST00000555774 SERPINA10Q9UK55 444 aa14.77□□□□□ -0.04
SHMT2-222ENST00000555774 RABGAP1Q9Y3P9 1069 aa14.77□□□□□ -0.04
SHMT2-222ENST00000555774 DAAM1Q9Y4D1 1078 aa14.77□□□□□ -0.04
SHMT2-222ENST00000555774 ATRNL1Q5VV63 1379 aa14.77□□□□□ -0.04
SHMT2-222ENST00000555774 HEXIM1O94992 359 aaKnown RBP14.77□□□□□ -0.05
SHMT2-222ENST00000555774 MUTP22033 750 aa14.77□□□□□ -0.05
SHMT2-222ENST00000555774 JAM2P57087 298 aa14.77□□□□□ -0.05
SHMT2-222ENST00000555774 ARID5AQ03989 594 aa14.77□□□□□ -0.05
SHMT2-222ENST00000555774 ZNF571Q7Z3V5 609 aaPredicted RBP14.77□□□□□ -0.05
SHMT2-222ENST00000555774 USP38Q8NB14 1042 aa14.77□□□□□ -0.05
SHMT2-222ENST00000555774 ZBTB9Q96C00 473 aa14.77□□□□□ -0.05
SHMT2-222ENST00000555774 PACSIN1Q9BY11 444 aa14.77□□□□□ -0.05
SHMT2-222ENST00000555774 FEZ2Q9UHY8 353 aaPredicted RBP14.77□□□□□ -0.05
SHMT2-222ENST00000555774 MEIS1O00470 390 aa14.76□□□□□ -0.05
SHMT2-222ENST00000555774 ENTPD3O75355 529 aa14.76□□□□□ -0.05
SHMT2-222ENST00000555774 AKAP3O75969 853 aa14.76□□□□□ -0.05
SHMT2-222ENST00000555774 SLC9A1P19634 815 aa14.76□□□□□ -0.05
SHMT2-222ENST00000555774 TCP10Q12799 353 aa14.76□□□□□ -0.05
SHMT2-222ENST00000555774 DACT2Q5SW24 774 aa14.76□□□□□ -0.05
SHMT2-222ENST00000555774 FMNL3Q8IVF7 1028 aa14.76□□□□□ -0.05
SHMT2-222ENST00000555774 CD302Q8IX05 232 aa14.76□□□□□ -0.05
SHMT2-222ENST00000555774 TSEN2Q8NCE0 465 aaKnown RBP14.76□□□□□ -0.05
SHMT2-222ENST00000555774 C1orf131Q8NDD1 294 aaKnown RBP14.76□□□□□ -0.05
SHMT2-222ENST00000555774 ACTRT1Q8TDG2 376 aa14.76□□□□□ -0.05
SHMT2-222ENST00000555774 LMBR1Q8WVP7 490 aa14.76□□□□□ -0.05
SHMT2-222ENST00000555774 CALR3Q96L12 384 aaKnown RBP14.76□□□□□ -0.05
SHMT2-222ENST00000555774 EIF2AK1Q9BQI3 630 aaKnown RBP14.76□□□□□ -0.05
SHMT2-222ENST00000555774 MKNK1Q9BUB5 465 aa14.76□□□□□ -0.05
SHMT2-222ENST00000555774 NAGPAQ9UK23 515 aa14.76□□□□□ -0.05
SHMT2-222ENST00000555774 PPP1R12BO60237 982 aaPredicted RBP14.76□□□□□ -0.05
SHMT2-222ENST00000555774 KIF4AO95239 1232 aa14.76□□□□□ -0.05
SHMT2-222ENST00000555774 GLI1P08151 1106 aa14.76□□□□□ -0.05
SHMT2-222ENST00000555774 ACTN1P12814 892 aa14.76□□□□□ -0.05
SHMT2-222ENST00000555774 FERP16591 822 aa14.76□□□□□ -0.05
SHMT2-222ENST00000555774 NPEPPSP55786 919 aa14.76□□□□□ -0.05
SHMT2-222ENST00000555774 SKOR1P84550 965 aa14.76□□□□□ -0.05
SHMT2-222ENST00000555774 SLC35C1Q96A29 364 aa14.76□□□□□ -0.05
SHMT2-222ENST00000555774 UIMC1Q96RL1 719 aa14.76□□□□□ -0.05
SHMT2-222ENST00000555774 BHMT2Q9H2M3 363 aa14.76□□□□□ -0.05
SHMT2-222ENST00000555774 FAM196BA6NMK8 535 aa14.75□□□□□ -0.05
SHMT2-222ENST00000555774 GCNT3O95395 438 aa14.75□□□□□ -0.05
SHMT2-222ENST00000555774 SLURP2P0DP57 97 aa14.75□□□□□ -0.05
SHMT2-222ENST00000555774 ZNF76P36508 570 aa14.75□□□□□ -0.05
SHMT2-222ENST00000555774 GUCY2DQ02846 1103 aa14.75□□□□□ -0.05
SHMT2-222ENST00000555774 IKQ13123 557 aaPredicted RBP14.75□□□□□ -0.05
SHMT2-222ENST00000555774 USH1GQ495M9 461 aa14.75□□□□□ -0.05
SHMT2-222ENST00000555774 ALKBH5Q6P6C2 394 aaKnown RBP14.75□□□□□ -0.05
SHMT2-222ENST00000555774 KIAA0825Q8IV33 1275 aa14.75□□□□□ -0.05
SHMT2-222ENST00000555774 SYCE1Q8N0S2 351 aa14.75□□□□□ -0.05
SHMT2-222ENST00000555774 LRRC57Q8N9N7 239 aa14.75□□□□□ -0.05
SHMT2-222ENST00000555774 RUSC1Q9BVN2 902 aa14.75□□□□□ -0.05
SHMT2-222ENST00000555774 CAPS2Q9BXY5 557 aa14.75□□□□□ -0.05
SHMT2-222ENST00000555774 FAM107BQ9H098 131 aa14.75□□□□□ -0.05
SHMT2-222ENST00000555774 RASSF4Q9H2L5 321 aa14.75□□□□□ -0.05
SHMT2-222ENST00000555774 EPB41L5Q9HCM4 733 aa14.75□□□□□ -0.05
SHMT2-222ENST00000555774 SIX2Q9NPC8 291 aa14.75□□□□□ -0.05
SHMT2-222ENST00000555774 SEL1LQ9UBV2 794 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms