RNA–Protein interactions for RNA: ENST00000523088.5

HDAC3-216, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-216ENST00000523088 SATB2Q9UPW6 733 aa8.27□□□□□ -1.09
HDAC3-216ENST00000523088 ATP11BQ9Y2G3 1177 aa8.27□□□□□ -1.09
HDAC3-216ENST00000523088 GIT1Q9Y2X7 761 aa8.27□□□□□ -1.09
HDAC3-216ENST00000523088 PCDHB2Q9Y5E7 798 aa8.27□□□□□ -1.09
HDAC3-216ENST00000523088 MYH2Q9UKX2 1941 aa8.27□□□□□ -1.09
HDAC3-216ENST00000523088 PDS5AQ29RF7 1337 aaKnown RBP8.27□□□□□ -1.09
HDAC3-216ENST00000523088 AKR1B15C9JRZ8 316 aaPredicted RBP8.26□□□□□ -1.09
HDAC3-216ENST00000523088 UBE2Q2LH0YL09 131 aa8.26□□□□□ -1.09
HDAC3-216ENST00000523088 LSM1O15116 133 aaKnown RBP8.26□□□□□ -1.09
HDAC3-216ENST00000523088 ADAMTS4O75173 837 aa8.26□□□□□ -1.09
HDAC3-216ENST00000523088 PAHP00439 452 aa8.26□□□□□ -1.09
HDAC3-216ENST00000523088 PCP11498 1178 aaKnown RBP8.26□□□□□ -1.09
HDAC3-216ENST00000523088 ALOX15P16050 662 aaPredicted RBP8.26□□□□□ -1.09
HDAC3-216ENST00000523088 HNRNPH1P31943 449 aaKnown RBP8.26□□□□□ -1.09
HDAC3-216ENST00000523088 RFX5P48382 616 aaPredicted RBP8.26□□□□□ -1.09
HDAC3-216ENST00000523088 SMTNP53814 917 aa8.26□□□□□ -1.09
HDAC3-216ENST00000523088 PMS2P54278 862 aa8.26□□□□□ -1.09
HDAC3-216ENST00000523088 HSD17B7P56937 341 aa8.26□□□□□ -1.09
HDAC3-216ENST00000523088 SKOR1P84550 965 aa8.26□□□□□ -1.09
HDAC3-216ENST00000523088 PTPN12Q05209 780 aaKnown RBP8.26□□□□□ -1.09
HDAC3-216ENST00000523088 TRAP1Q12931 704 aaKnown RBP8.26□□□□□ -1.09
HDAC3-216ENST00000523088 MTX1Q13505 466 aa8.26□□□□□ -1.09
HDAC3-216ENST00000523088 PDE1CQ14123 709 aaPredicted RBP8.26□□□□□ -1.09
HDAC3-216ENST00000523088 SEPT6Q14141 434 aa8.26□□□□□ -1.09
HDAC3-216ENST00000523088 HLTFQ14527 1009 aaKnown RBP eCLIP8.26□□□□□ -1.09
HDAC3-216ENST00000523088 MAP7D1Q3KQU3 841 aa8.26□□□□□ -1.09
HDAC3-216ENST00000523088 KRT71Q3SY84 523 aa8.26□□□□□ -1.09
HDAC3-216ENST00000523088 LRRC24Q50LG9 513 aa8.26□□□□□ -1.09
HDAC3-216ENST00000523088 PLBD1Q6P4A8 553 aa8.26□□□□□ -1.09
HDAC3-216ENST00000523088 POTEEQ6S8J3 1075 aa8.26□□□□□ -1.09
HDAC3-216ENST00000523088 C16orf54Q6UWD8 224 aa8.26□□□□□ -1.09
HDAC3-216ENST00000523088 CCDC129Q6ZRS4 1044 aa8.26□□□□□ -1.09
HDAC3-216ENST00000523088 CTU1Q7Z7A3 348 aaKnown RBP8.26□□□□□ -1.09
HDAC3-216ENST00000523088 HOOK3Q86VS8 718 aa8.26□□□□□ -1.09
HDAC3-216ENST00000523088 GRAMD2AQ8IUY3 354 aa8.26□□□□□ -1.09
HDAC3-216ENST00000523088 DZIP1LQ8IYY4 767 aaKnown RBP8.26□□□□□ -1.09
HDAC3-216ENST00000523088 SYT2Q8N9I0 419 aaPredicted RBP8.26□□□□□ -1.09
HDAC3-216ENST00000523088 SPDYE1Q8NFV5 336 aaPredicted RBP8.26□□□□□ -1.09
HDAC3-216ENST00000523088 DIS3LQ8TF46 1054 aaKnown RBP8.26□□□□□ -1.09
HDAC3-216ENST00000523088 ATP6V0A1Q93050 837 aa8.26□□□□□ -1.09
HDAC3-216ENST00000523088 SLC10A4Q96EP9 437 aa8.26□□□□□ -1.09
HDAC3-216ENST00000523088 SNF8Q96H20 258 aa8.26□□□□□ -1.09
HDAC3-216ENST00000523088 PRMT6Q96LA8 375 aaPredicted RBP8.26□□□□□ -1.09
HDAC3-216ENST00000523088 RBM14Q96PK6 669 aaKnown RBP8.26□□□□□ -1.09
HDAC3-216ENST00000523088 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.26□□□□□ -1.096e-10■■■■■ 27
HDAC3-216ENST00000523088 TINF2Q9BSI4 451 aa8.26□□□□□ -1.09
HDAC3-216ENST00000523088 SELENOOQ9BVL4 669 aa8.26□□□□□ -1.09
HDAC3-216ENST00000523088 NIFKQ9BYG3 293 aaKnown RBP8.26□□□□□ -1.09
HDAC3-216ENST00000523088 TRIM5Q9C035 493 aa8.26□□□□□ -1.09
HDAC3-216ENST00000523088 CHST12Q9NRB3 414 aa8.26□□□□□ -1.09
HDAC3-216ENST00000523088 PICK1Q9NRD5 415 aa8.26□□□□□ -1.09
HDAC3-216ENST00000523088 ENAMQ9NRM1 1142 aa8.26□□□□□ -1.09
HDAC3-216ENST00000523088 SEPT11Q9NVA2 429 aaKnown RBP8.26□□□□□ -1.09
HDAC3-216ENST00000523088 CIDEBQ9UHD4 219 aa8.26□□□□□ -1.09
HDAC3-216ENST00000523088 DSEQ9UL01 958 aa8.26□□□□□ -1.09
HDAC3-216ENST00000523088 DENND2AQ9ULE3 1009 aa8.26□□□□□ -1.09
HDAC3-216ENST00000523088 SCAF8Q9UPN6 1271 aaKnown RBP8.26□□□□□ -1.09
HDAC3-216ENST00000523088 SALL1Q9NSC2 1324 aa8.26□□□□□ -1.09
HDAC3-216ENST00000523088 DOCK2Q92608 1830 aa8.25□□□□□ -1.09
HDAC3-216ENST00000523088 IQANK1A0A1B0GTG1 560 aa8.25□□□□□ -1.09
HDAC3-216ENST00000523088 ERICH2A1L162 156 aa8.25□□□□□ -1.09
HDAC3-216ENST00000523088 RASA4BC9J798 803 aa8.25□□□□□ -1.09
HDAC3-216ENST00000523088 ENPP3O14638 875 aa8.25□□□□□ -1.09
HDAC3-216ENST00000523088 KLHL41O60662 606 aa8.25□□□□□ -1.09
HDAC3-216ENST00000523088 BAG2O95816 211 aa8.25□□□□□ -1.09
HDAC3-216ENST00000523088 GNAI2P04899 355 aa8.25□□□□□ -1.09
HDAC3-216ENST00000523088 VIMP08670 466 aaKnown RBP8.25□□□□□ -1.09
HDAC3-216ENST00000523088 INHBCP55103 352 aa8.25□□□□□ -1.09
HDAC3-216ENST00000523088 POLR2FP61218 127 aaKnown RBP8.25□□□□□ -1.09
HDAC3-216ENST00000523088 NFX1Q12986 1120 aaKnown RBP8.25□□□□□ -1.09
HDAC3-216ENST00000523088 USP4Q13107 963 aa8.25□□□□□ -1.09
HDAC3-216ENST00000523088 CAMK2BQ13554 666 aa8.25□□□□□ -1.09
HDAC3-216ENST00000523088 DGKZQ13574 1117 aa8.25□□□□□ -1.09
HDAC3-216ENST00000523088 CUL3Q13618 768 aa8.25□□□□□ -1.09
HDAC3-216ENST00000523088 LBRQ14739 615 aaKnown RBP8.25□□□□□ -1.09
HDAC3-216ENST00000523088 MVPQ14764 893 aaKnown RBP8.25□□□□□ -1.09
HDAC3-216ENST00000523088 SPRYD7Q5W111 196 aa8.25□□□□□ -1.09
HDAC3-216ENST00000523088 DCAF15Q66K64 600 aa8.25□□□□□ -1.09
HDAC3-216ENST00000523088 CFAP161Q6P656 301 aa8.25□□□□□ -1.09
HDAC3-216ENST00000523088 DLK2Q6UY11 383 aa8.25□□□□□ -1.09
HDAC3-216ENST00000523088 NCCRP1Q6ZVX7 275 aaPredicted RBP8.25□□□□□ -1.09
HDAC3-216ENST00000523088 NLRP9Q7RTR0 991 aa8.25□□□□□ -1.09
HDAC3-216ENST00000523088 TMC6Q7Z403 805 aa8.25□□□□□ -1.09
HDAC3-216ENST00000523088 SPC24Q8NBT2 197 aa8.25□□□□□ -1.09
HDAC3-216ENST00000523088 NUP133Q8WUM0 1156 aa8.25□□□□□ -1.09
HDAC3-216ENST00000523088 SNX27Q96L92 541 aa8.25□□□□□ -1.09
HDAC3-216ENST00000523088 SAMD11Q96NU1 681 aa8.25□□□□□ -1.09
HDAC3-216ENST00000523088 MRPL9Q9BYD2 267 aaKnown RBP8.25□□□□□ -1.09
HDAC3-216ENST00000523088 MCOLN1Q9GZU1 580 aa8.25□□□□□ -1.09
HDAC3-216ENST00000523088 BRD9Q9H8M2 597 aa8.25□□□□□ -1.09
HDAC3-216ENST00000523088 PPCSQ9HAB8 311 aa8.25□□□□□ -1.09
HDAC3-216ENST00000523088 HELLSQ9NRZ9 838 aa8.25□□□□□ -1.09
HDAC3-216ENST00000523088 RYDENQ9NUL5 291 aaKnown RBP8.25□□□□□ -1.09
HDAC3-216ENST00000523088 PPP1R14DQ9NXH3 145 aa8.25□□□□□ -1.09
HDAC3-216ENST00000523088 ZNF70Q9UC06 446 aaPredicted RBP8.25□□□□□ -1.09
HDAC3-216ENST00000523088 TSKSQ9UJT2 592 aa8.25□□□□□ -1.09
HDAC3-216ENST00000523088 CNPY2Q9Y2B0 182 aa8.25□□□□□ -1.09
HDAC3-216ENST00000523088 DAAM1Q9Y4D1 1078 aa8.25□□□□□ -1.09
HDAC3-216ENST00000523088 CSADQ9Y600 493 aa8.25□□□□□ -1.09
HDAC3-216ENST00000523088 SSC5DA1L4H1 1573 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms