RNA–Protein interactions for RNA: ENST00000490557.1

HMGB1P38-201, Transcript of high mobility group box 1 pseudogene 38, humanhuman

BASIC

Gene HMGB1P38, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P38-201ENST00000490557 DACT3Q96B18 629 aaPredicted RBP6.82□□□□□ -1.32
HMGB1P38-201ENST00000490557 ELF4Q99607 663 aaPredicted RBP6.82□□□□□ -1.32
HMGB1P38-201ENST00000490557 IFT22Q9H7X7 185 aa6.82□□□□□ -1.32
HMGB1P38-201ENST00000490557 INCENPQ9NQS7 918 aa6.82□□□□□ -1.32
HMGB1P38-201ENST00000490557 UCKL1Q9NWZ5 548 aa6.82□□□□□ -1.32
HMGB1P38-201ENST00000490557 H2AFY2Q9P0M6 372 aaPredicted RBP6.82□□□□□ -1.32
HMGB1P38-201ENST00000490557 MCM8Q9UJA3 840 aa6.82□□□□□ -1.32
HMGB1P38-201ENST00000490557 ZFP69BQ9UJL9 534 aa6.82□□□□□ -1.32
HMGB1P38-201ENST00000490557 ASB1Q9Y576 335 aa6.82□□□□□ -1.32
HMGB1P38-201ENST00000490557 BRINP1O60477 761 aa6.81□□□□□ -1.32
HMGB1P38-201ENST00000490557 RAB11FIP3O75154 756 aa6.81□□□□□ -1.32
HMGB1P38-201ENST00000490557 NCLP19338 710 aaKnown RBP6.81□□□□□ -1.32
HMGB1P38-201ENST00000490557 THBS2P35442 1172 aa6.81□□□□□ -1.32
HMGB1P38-201ENST00000490557 FNTBP49356 437 aa6.81□□□□□ -1.32
HMGB1P38-201ENST00000490557 HTRA3P83110 453 aa6.81□□□□□ -1.32
HMGB1P38-201ENST00000490557 ATP13A4Q4VNC1 1196 aa6.81□□□□□ -1.32
HMGB1P38-201ENST00000490557 CATSPEREQ5SY80 951 aa6.81□□□□□ -1.32
HMGB1P38-201ENST00000490557 PHF19Q5T6S3 580 aa6.81□□□□□ -1.32
HMGB1P38-201ENST00000490557 TRMT10BQ6PF06 316 aaKnown RBP6.81□□□□□ -1.32
HMGB1P38-201ENST00000490557 DPP8Q6V1X1 898 aaPredicted RBP6.81□□□□□ -1.32
HMGB1P38-201ENST00000490557 SAPCD2Q86UD0 394 aa6.81□□□□□ -1.32
HMGB1P38-201ENST00000490557 PROSER1Q86XN7 944 aa6.81□□□□□ -1.32
HMGB1P38-201ENST00000490557 CALML6Q8TD86 181 aa6.81□□□□□ -1.32
HMGB1P38-201ENST00000490557 L2HGDHQ9H9P8 463 aa6.81□□□□□ -1.32
HMGB1P38-201ENST00000490557 DVL2O14641 736 aa6.8□□□□□ -1.32
HMGB1P38-201ENST00000490557 ZEB2O60315 1214 aa6.8□□□□□ -1.32
HMGB1P38-201ENST00000490557 MC4RP32245 332 aa6.8□□□□□ -1.32
HMGB1P38-201ENST00000490557 ADCYAP1R1P41586 468 aa6.8□□□□□ -1.32
HMGB1P38-201ENST00000490557 STPG3Q8N7X2 389 aa6.8□□□□□ -1.32
HMGB1P38-201ENST00000490557 TACO1Q9BSH4 297 aaKnown RBP6.8□□□□□ -1.32
HMGB1P38-201ENST00000490557 SPTLC3Q9NUV7 552 aa6.8□□□□□ -1.32
HMGB1P38-201ENST00000490557 GALNT8Q9NY28 637 aa6.8□□□□□ -1.32
HMGB1P38-201ENST00000490557 FTSJ1Q9UET6 329 aa6.8□□□□□ -1.32
HMGB1P38-201ENST00000490557 APOBEC2Q9Y235 224 aaKnown RBP6.8□□□□□ -1.32
HMGB1P38-201ENST00000490557 UBA6A0AVT1 1052 aaPredicted RBP6.79□□□□□ -1.32
HMGB1P38-201ENST00000490557 RASSF10A6NK89 507 aa6.79□□□□□ -1.32
HMGB1P38-201ENST00000490557 YBX3P16989 372 aaKnown RBP eCLIP6.79□□□□□ -1.32
HMGB1P38-201ENST00000490557 CD40P25942 277 aa6.79□□□□□ -1.32
HMGB1P38-201ENST00000490557 PTX3P26022 381 aaPredicted RBP6.79□□□□□ -1.32
HMGB1P38-201ENST00000490557 RPL13P26373 211 aaKnown RBP6.79□□□□□ -1.32
HMGB1P38-201ENST00000490557 SARSP49591 514 aaKnown RBP6.79□□□□□ -1.32
HMGB1P38-201ENST00000490557 CAP1Q01518 475 aa6.79□□□□□ -1.32
HMGB1P38-201ENST00000490557 ADCY1Q08828 1119 aa6.79□□□□□ -1.32
HMGB1P38-201ENST00000490557 SMAD2Q15796 467 aaKnown RBP6.79□□□□□ -1.32
HMGB1P38-201ENST00000490557 DDB1Q16531 1140 aa6.79□□□□□ -1.32
HMGB1P38-201ENST00000490557 VMACQ2NL98 169 aa6.79□□□□□ -1.32
HMGB1P38-201ENST00000490557 TIGD7Q6NT04 549 aaPredicted RBP6.79□□□□□ -1.32
HMGB1P38-201ENST00000490557 STRA8Q7Z7C7 330 aa6.79□□□□□ -1.32
HMGB1P38-201ENST00000490557 C7orf31Q8N865 590 aa6.79□□□□□ -1.32
HMGB1P38-201ENST00000490557 LINC01356Q8N9X3 169 aa6.79□□□□□ -1.32
HMGB1P38-201ENST00000490557 ZNF526Q8TF50 670 aaPredicted RBP6.79□□□□□ -1.32
HMGB1P38-201ENST00000490557 EMC7Q9NPA0 242 aa6.79□□□□□ -1.32
HMGB1P38-201ENST00000490557 BTBD7Q9P203 1132 aa6.79□□□□□ -1.32
HMGB1P38-201ENST00000490557 WASF3Q9UPY6 502 aa6.79□□□□□ -1.32
HMGB1P38-201ENST00000490557 DDX3XO00571 662 aaKnown RBP eCLIP6.78□□□□□ -1.32
HMGB1P38-201ENST00000490557 NEMP1O14524 444 aa6.78□□□□□ -1.32
HMGB1P38-201ENST00000490557 CYP1A1P04798 512 aaPredicted RBP6.78□□□□□ -1.32
HMGB1P38-201ENST00000490557 BPIP17213 487 aa6.78□□□□□ -1.32
HMGB1P38-201ENST00000490557 CFPP27918 469 aa6.78□□□□□ -1.32
HMGB1P38-201ENST00000490557 LSP1P33241 339 aa6.78□□□□□ -1.32
HMGB1P38-201ENST00000490557 ECE1P42892 770 aa6.78□□□□□ -1.32
HMGB1P38-201ENST00000490557 ROM1Q03395 351 aa6.78□□□□□ -1.32
HMGB1P38-201ENST00000490557 EPHA7Q15375 998 aa6.78□□□□□ -1.32
HMGB1P38-201ENST00000490557 WDR72Q3MJ13 1102 aa6.78□□□□□ -1.32
HMGB1P38-201ENST00000490557 TTC38Q5R3I4 469 aa6.78□□□□□ -1.32
HMGB1P38-201ENST00000490557 CREB3L3Q68CJ9 461 aa6.78□□□□□ -1.32
HMGB1P38-201ENST00000490557 HDGFL2Q7Z4V5 671 aaPredicted RBP6.78□□□□□ -1.32
HMGB1P38-201ENST00000490557 CILP2Q8IUL8 1156 aa6.78□□□□□ -1.32
HMGB1P38-201ENST00000490557 CARFQ8N187 725 aa6.78□□□□□ -1.32
HMGB1P38-201ENST00000490557 AFAP1L2Q8N4X5 818 aa6.78□□□□□ -1.32
HMGB1P38-201ENST00000490557 TUBGCP5Q96RT8 1024 aa6.78□□□□□ -1.32
HMGB1P38-201ENST00000490557 SPATA6Q9NWH7 488 aaPredicted RBP6.78□□□□□ -1.32
HMGB1P38-201ENST00000490557 SH3D21A4FU49 640 aa6.77□□□□□ -1.33
HMGB1P38-201ENST00000490557 H0Y858 1186 aa6.77□□□□□ -1.33
HMGB1P38-201ENST00000490557 GOLGA6L22H0YM25 854 aa6.77□□□□□ -1.33
HMGB1P38-201ENST00000490557 FFAR3O14843 346 aa6.77□□□□□ -1.33
HMGB1P38-201ENST00000490557 ULK1O75385 1050 aa6.77□□□□□ -1.33
HMGB1P38-201ENST00000490557 APOL3O95236 402 aa6.77□□□□□ -1.33
HMGB1P38-201ENST00000490557 CHGBP05060 677 aa6.77□□□□□ -1.33
HMGB1P38-201ENST00000490557 IL13P35225 146 aa6.77□□□□□ -1.33
HMGB1P38-201ENST00000490557 TMPRSS15P98073 1019 aa6.77□□□□□ -1.33
HMGB1P38-201ENST00000490557 VWA3BQ502W6 1294 aa6.77□□□□□ -1.33
HMGB1P38-201ENST00000490557 PRAMEF9Q5VWM5 478 aa6.77□□□□□ -1.33
HMGB1P38-201ENST00000490557 ADGRG2Q8IZP9 1017 aa6.77□□□□□ -1.33
HMGB1P38-201ENST00000490557 WDR66Q8TBY9 1149 aa6.77□□□□□ -1.33
HMGB1P38-201ENST00000490557 BTBD2Q9BX70 525 aa6.77□□□□□ -1.33
HMGB1P38-201ENST00000490557 COL4A3BPQ9Y5P4 624 aa6.77□□□□□ -1.33
HMGB1P38-201ENST00000490557 A0A1B0GTL3 188 aa6.76□□□□□ -1.33
HMGB1P38-201ENST00000490557 SLC6A3Q01959 620 aa6.76□□□□□ -1.33
HMGB1P38-201ENST00000490557 STAT4Q14765 748 aa6.76□□□□□ -1.33
HMGB1P38-201ENST00000490557 PTPROQ16827 1216 aa6.76□□□□□ -1.33
HMGB1P38-201ENST00000490557 IQSEC1Q6DN90 963 aa6.76□□□□□ -1.33
HMGB1P38-201ENST00000490557 SLFN12LQ6IEE8 588 aa6.76□□□□□ -1.33
HMGB1P38-201ENST00000490557 ESRP1Q6NXG1 681 aaKnown RBP6.76□□□□□ -1.33
HMGB1P38-201ENST00000490557 OTOP2Q7RTS6 562 aa6.76□□□□□ -1.33
HMGB1P38-201ENST00000490557 PHYKPLQ8IUZ5 450 aa6.76□□□□□ -1.33
HMGB1P38-201ENST00000490557 RTF1Q92541 710 aaKnown RBP6.76□□□□□ -1.33
HMGB1P38-201ENST00000490557 SLC5A5Q92911 643 aa6.76□□□□□ -1.33
HMGB1P38-201ENST00000490557 C16orf92Q96LL3 132 aa6.76□□□□□ -1.33
HMGB1P38-201ENST00000490557 FOXB1Q99853 325 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms