RNA–Protein interactions for RNA: ENST00000485247.1

PTPN4-210, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 590 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-210ENST00000485247 BEX3Q00994 111 aa6.51□□□□□ -1.37
PTPN4-210ENST00000485247 ZP2Q05996 745 aa6.51□□□□□ -1.37
PTPN4-210ENST00000485247 KCTD2Q14681 263 aa6.51□□□□□ -1.37
PTPN4-210ENST00000485247 ABCB5Q2M3G0 1257 aa6.51□□□□□ -1.37
PTPN4-210ENST00000485247 ZNF792Q3KQV3 632 aa6.51□□□□□ -1.37
PTPN4-210ENST00000485247 CERKLQ49MI3 558 aaPredicted RBP6.51□□□□□ -1.37
PTPN4-210ENST00000485247 TATDN1Q6P1N9 297 aa6.51□□□□□ -1.37
PTPN4-210ENST00000485247 CXCL17Q6UXB2 119 aa6.51□□□□□ -1.37
PTPN4-210ENST00000485247 ATF7IPQ6VMQ6 1270 aa6.51□□□□□ -1.37
PTPN4-210ENST00000485247 MAP4K3Q8IVH8 894 aa6.51□□□□□ -1.37
PTPN4-210ENST00000485247 HERC6Q8IVU3 1022 aa6.51□□□□□ -1.37
PTPN4-210ENST00000485247 AGGF1Q8N302 714 aaeCLIP6.51□□□□□ -1.37
PTPN4-210ENST00000485247 Q8N3U1 123 aa6.51□□□□□ -1.37
PTPN4-210ENST00000485247 MB21D1Q8N884 522 aa6.51□□□□□ -1.37
PTPN4-210ENST00000485247 ATOH1Q92858 354 aaPredicted RBP6.51□□□□□ -1.37
PTPN4-210ENST00000485247 ATG4CQ96DT6 458 aa6.51□□□□□ -1.37
PTPN4-210ENST00000485247 SLC9A7Q96T83 725 aa6.51□□□□□ -1.37
PTPN4-210ENST00000485247 ADAM19Q9H013 955 aa6.51□□□□□ -1.37
PTPN4-210ENST00000485247 MUC3BQ9H195 1237 aa6.51□□□□□ -1.37
PTPN4-210ENST00000485247 AKTIPQ9H8T0 292 aa6.51□□□□□ -1.37
PTPN4-210ENST00000485247 DZANK1Q9NVP4 752 aa6.51□□□□□ -1.37
PTPN4-210ENST00000485247 LMCD1Q9NZU5 365 aa6.51□□□□□ -1.37
PTPN4-210ENST00000485247 HMG20BQ9P0W2 317 aa6.51□□□□□ -1.37
PTPN4-210ENST00000485247 MUTYHQ9UIF7 546 aa6.51□□□□□ -1.37
PTPN4-210ENST00000485247 MTMR7Q9Y216 660 aa6.51□□□□□ -1.37
PTPN4-210ENST00000485247 DIS3Q9Y2L1 958 aaKnown RBP6.51□□□□□ -1.37
PTPN4-210ENST00000485247 A0A1W2PRG0 241 aa6.5□□□□□ -1.37
PTPN4-210ENST00000485247 LCHNA4D1U4 455 aa6.5□□□□□ -1.37
PTPN4-210ENST00000485247 SLC25A27O95847 323 aa6.5□□□□□ -1.37
PTPN4-210ENST00000485247 ACTN1P12814 892 aa6.5□□□□□ -1.37
PTPN4-210ENST00000485247 IL15P40933 162 aaPredicted RBP6.5□□□□□ -1.37
PTPN4-210ENST00000485247 ID4P47928 161 aa6.5□□□□□ -1.37
PTPN4-210ENST00000485247 GJA9P57773 515 aa6.5□□□□□ -1.37
PTPN4-210ENST00000485247 ITGA7Q13683 1181 aa6.5□□□□□ -1.37
PTPN4-210ENST00000485247 AAMPQ13685 434 aa6.5□□□□□ -1.37
PTPN4-210ENST00000485247 TMEM132BQ14DG7 1078 aa6.5□□□□□ -1.37
PTPN4-210ENST00000485247 KIAA1755Q5JYT7 1200 aa6.5□□□□□ -1.37
PTPN4-210ENST00000485247 NAA16Q6N069 864 aaPredicted RBP6.5□□□□□ -1.37
PTPN4-210ENST00000485247 Q6ZS46 218 aa6.5□□□□□ -1.37
PTPN4-210ENST00000485247 EP400NLQ6ZTU2 488 aa6.5□□□□□ -1.37
PTPN4-210ENST00000485247 ZC3HAV1Q7Z2W4 902 aaKnown RBP6.5□□□□□ -1.37
PTPN4-210ENST00000485247 SUGP1Q8IWZ8 645 aaKnown RBP6.5□□□□□ -1.37
PTPN4-210ENST00000485247 TMEM130Q8N3G9 435 aa6.5□□□□□ -1.37
PTPN4-210ENST00000485247 SPATA5Q8NB90 893 aa6.5□□□□□ -1.37
PTPN4-210ENST00000485247 RETREG2Q8NC44 543 aa6.5□□□□□ -1.37
PTPN4-210ENST00000485247 PHOSPHO2Q8TCD6 241 aa6.5□□□□□ -1.37
PTPN4-210ENST00000485247 PRRX2Q99811 253 aa6.5□□□□□ -1.37
PTPN4-210ENST00000485247 UPF3BQ9BZI7 483 aaKnown RBP6.5□□□□□ -1.37
PTPN4-210ENST00000485247 USP44Q9H0E7 712 aa6.5□□□□□ -1.37
PTPN4-210ENST00000485247 SUGCTQ9HAC7 445 aa6.5□□□□□ -1.37
PTPN4-210ENST00000485247 CABP5Q9NP86 173 aa6.5□□□□□ -1.37
PTPN4-210ENST00000485247 LRP2BPQ9P2M1 347 aa6.5□□□□□ -1.37
PTPN4-210ENST00000485247 ZNFX1Q9P2E3 1918 aaKnown RBP6.5□□□□□ -1.37
PTPN4-210ENST00000485247 ZFHX2Q9C0A1 2572 aaPredicted RBP6.5□□□□□ -1.37
PTPN4-210ENST00000485247 COL4A4P53420 1690 aaPredicted RBP6.49□□□□□ -1.37
PTPN4-210ENST00000485247 A0A1B0GUL7 405 aa6.49□□□□□ -1.37
PTPN4-210ENST00000485247 FSCN2O14926 492 aa6.49□□□□□ -1.37
PTPN4-210ENST00000485247 CTAGE5O15320 804 aa6.49□□□□□ -1.37
PTPN4-210ENST00000485247 ICMTO60725 284 aa6.49□□□□□ -1.37
PTPN4-210ENST00000485247 PFKMP08237 780 aa6.49□□□□□ -1.37
PTPN4-210ENST00000485247 GUCY1A2P33402 732 aa6.49□□□□□ -1.37
PTPN4-210ENST00000485247 PSMC6P62333 389 aa6.49□□□□□ -1.37
PTPN4-210ENST00000485247 ACVR2BQ13705 512 aa6.49□□□□□ -1.37
PTPN4-210ENST00000485247 SEPT2Q15019 361 aa6.49□□□□□ -1.37
PTPN4-210ENST00000485247 CCDC144BQ3MJ40 725 aa6.49□□□□□ -1.37
PTPN4-210ENST00000485247 ZMYM1Q5SVZ6 1142 aa6.49□□□□□ -1.37
PTPN4-210ENST00000485247 NOL8Q76FK4 1167 aaKnown RBP6.49□□□□□ -1.37
PTPN4-210ENST00000485247 TMCO2Q7Z6W1 182 aaPredicted RBP6.49□□□□□ -1.37
PTPN4-210ENST00000485247 ADGRA1Q86SQ6 560 aa6.49□□□□□ -1.37
PTPN4-210ENST00000485247 ADHFE1Q8IWW8 467 aa6.49□□□□□ -1.37
PTPN4-210ENST00000485247 SPICE1Q8N0Z3 855 aa6.49□□□□□ -1.37
PTPN4-210ENST00000485247 SLC43A3Q8NBI5 491 aa6.49□□□□□ -1.37
PTPN4-210ENST00000485247 NEK9Q8TD19 979 aa6.49□□□□□ -1.37
PTPN4-210ENST00000485247 SNX29Q8TEQ0 813 aa6.49□□□□□ -1.37
PTPN4-210ENST00000485247 NEUROD6Q96NK8 337 aa6.49□□□□□ -1.37
PTPN4-210ENST00000485247 ZKSCAN3Q9BRR0 538 aa6.49□□□□□ -1.37
PTPN4-210ENST00000485247 UPF3AQ9H1J1 476 aaKnown RBP6.49□□□□□ -1.37
PTPN4-210ENST00000485247 PRKAG3Q9UGI9 489 aa6.49□□□□□ -1.37
PTPN4-210ENST00000485247 EGFL7Q9UHF1 273 aa6.49□□□□□ -1.37
PTPN4-210ENST00000485247 SERPINB13Q9UIV8 391 aa6.49□□□□□ -1.37
PTPN4-210ENST00000485247 PA2G4Q9UQ80 394 aaKnown RBP6.49□□□□□ -1.37
PTPN4-210ENST00000485247 PTPRZ1P23471 2315 aaPredicted RBP6.49□□□□□ -1.37
PTPN4-210ENST00000485247 CDK5RAP2Q96SN8 1893 aa6.49□□□□□ -1.37
PTPN4-210ENST00000485247 SPTBN4Q9H254 2564 aa6.49□□□□□ -1.37
PTPN4-210ENST00000485247 GRIN2DO15399 1336 aa6.49□□□□□ -1.37
PTPN4-210ENST00000485247 IL16Q14005 1332 aa6.49□□□□□ -1.37
PTPN4-210ENST00000485247 TMEM221A6NGB7 291 aa6.48□□□□□ -1.37
PTPN4-210ENST00000485247 H0Y858 1186 aa6.48□□□□□ -1.37
PTPN4-210ENST00000485247 H3BRB1 525 aa6.48□□□□□ -1.37
PTPN4-210ENST00000485247 M0R296 226 aa6.48□□□□□ -1.37
PTPN4-210ENST00000485247 PDE2AO00408 941 aaPredicted RBP6.48□□□□□ -1.37
PTPN4-210ENST00000485247 MPHOSPH10O00566 681 aaKnown RBP6.48□□□□□ -1.37
PTPN4-210ENST00000485247 ADAM11O75078 769 aa6.48□□□□□ -1.37
PTPN4-210ENST00000485247 PHACTR2O75167 634 aa6.48□□□□□ -1.37
PTPN4-210ENST00000485247 CYP2C9P11712 490 aa6.48□□□□□ -1.37
PTPN4-210ENST00000485247 CD68P34810 354 aaPredicted RBP6.48□□□□□ -1.37
PTPN4-210ENST00000485247 STAT3P40763 770 aa6.48□□□□□ -1.37
PTPN4-210ENST00000485247 MVPQ14764 893 aaKnown RBP6.48□□□□□ -1.37
PTPN4-210ENST00000485247 HERC4Q5GLZ8 1057 aaPredicted RBP6.48□□□□□ -1.37
PTPN4-210ENST00000485247 GORABQ5T7V8 394 aa6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms