RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 GPR85P60893 370 aa5.77□□□□□ -1.49
VPS29-202ENST00000447578 NOLC1Q14978 699 aaKnown RBP eCLIP5.77□□□□□ -1.49
VPS29-202ENST00000447578 KCTD1Q719H9 257 aa5.77□□□□□ -1.49
VPS29-202ENST00000447578 FILIP1Q7Z7B0 1213 aa5.77□□□□□ -1.49
VPS29-202ENST00000447578 SH3RF2Q8TEC5 729 aa5.77□□□□□ -1.49
VPS29-202ENST00000447578 SH3TC2Q8TF17 1288 aa5.77□□□□□ -1.49
VPS29-202ENST00000447578 ADOQ96SZ5 270 aa5.77□□□□□ -1.49
VPS29-202ENST00000447578 ZNF341Q9BYN7 854 aa5.77□□□□□ -1.49
VPS29-202ENST00000447578 PDGFDQ9GZP0 370 aaPredicted RBP5.77□□□□□ -1.49
VPS29-202ENST00000447578 SLKQ9H2G2 1235 aaPredicted RBP5.77□□□□□ -1.49
VPS29-202ENST00000447578 ESYT3A0FGR9 886 aa5.76□□□□□ -1.49
VPS29-202ENST00000447578 NPIPB8E9PQR5 432 aa5.76□□□□□ -1.49
VPS29-202ENST00000447578 PDPK1O15530 556 aa5.76□□□□□ -1.49
VPS29-202ENST00000447578 FGFR1P11362 822 aa5.76□□□□□ -1.49
VPS29-202ENST00000447578 PRKD1Q15139 912 aaPredicted RBP5.76□□□□□ -1.49
VPS29-202ENST00000447578 STYK1Q6J9G0 422 aa5.76□□□□□ -1.49
VPS29-202ENST00000447578 IFNL3Q8IZI9 196 aa5.76□□□□□ -1.49
VPS29-202ENST00000447578 IFNL2Q8IZJ0 200 aa5.76□□□□□ -1.49
VPS29-202ENST00000447578 LILRB2Q8N423 598 aa5.76□□□□□ -1.49
VPS29-202ENST00000447578 APPBP2Q92624 585 aa5.76□□□□□ -1.49
VPS29-202ENST00000447578 NEIL1Q96FI4 390 aaPredicted RBP5.76□□□□□ -1.49
VPS29-202ENST00000447578 SGSM3Q96HU1 749 aa5.76□□□□□ -1.49
VPS29-202ENST00000447578 FANCLQ9NW38 375 aa5.76□□□□□ -1.49
VPS29-202ENST00000447578 IFT57Q9NWB7 429 aa5.76□□□□□ -1.49
VPS29-202ENST00000447578 MSRB2Q9Y3D2 182 aa5.76□□□□□ -1.49
VPS29-202ENST00000447578 TRAF6Q9Y4K3 522 aa5.76□□□□□ -1.49
VPS29-202ENST00000447578 NUB1Q9Y5A7 615 aa5.76□□□□□ -1.49
VPS29-202ENST00000447578 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP5.75□□□□□ -1.49
VPS29-202ENST00000447578 FAM47E-STBD1D6RA91 191 aa5.75□□□□□ -1.49
VPS29-202ENST00000447578 CDC45O75419 566 aa5.75□□□□□ -1.49
VPS29-202ENST00000447578 USP10Q14694 798 aaKnown RBP5.75□□□□□ -1.49
VPS29-202ENST00000447578 HS1BP3Q53T59 392 aa5.75□□□□□ -1.49
VPS29-202ENST00000447578 PLEKHG4Q58EX7 1191 aa5.75□□□□□ -1.49
VPS29-202ENST00000447578 IGFL4Q6B9Z1 124 aa5.75□□□□□ -1.49
VPS29-202ENST00000447578 HOMER1Q86YM7 354 aa5.75□□□□□ -1.49
VPS29-202ENST00000447578 FUKQ8N0W3 1084 aa5.75□□□□□ -1.49
VPS29-202ENST00000447578 ZFYVE21Q9BQ24 234 aa5.75□□□□□ -1.49
VPS29-202ENST00000447578 SPC25Q9HBM1 224 aa5.75□□□□□ -1.49
VPS29-202ENST00000447578 NOP58Q9Y2X3 529 aaKnown RBP5.75□□□□□ -1.49
VPS29-202ENST00000447578 PLSCR1O15162 318 aa5.74□□□□□ -1.49
VPS29-202ENST00000447578 DNAJC6O75061 913 aa5.74□□□□□ -1.49
VPS29-202ENST00000447578 RAB11FIP3O75154 756 aa5.74□□□□□ -1.49
VPS29-202ENST00000447578 RRADP55042 308 aa5.74□□□□□ -1.49
VPS29-202ENST00000447578 DBPQ10586 325 aaPredicted RBP5.74□□□□□ -1.49
VPS29-202ENST00000447578 FOXE3Q13461 319 aa5.74□□□□□ -1.49
VPS29-202ENST00000447578 RASGRF1Q13972 1273 aa5.74□□□□□ -1.49
VPS29-202ENST00000447578 RNF151Q2KHN1 245 aa5.74□□□□□ -1.49
VPS29-202ENST00000447578 NRN1LQ496H8 165 aa5.74□□□□□ -1.49
VPS29-202ENST00000447578 AGBL4Q5VU57 503 aa5.74□□□□□ -1.49
VPS29-202ENST00000447578 REXO1L1PQ8IX06 675 aa5.74□□□□□ -1.49
VPS29-202ENST00000447578 PUM2Q8TB72 1066 aaKnown RBP eCLIP5.74□□□□□ -1.494e-11■■■■□ 26.4
VPS29-202ENST00000447578 EXTL1Q92935 676 aa5.74□□□□□ -1.49
VPS29-202ENST00000447578 CARD11Q9BXL7 1154 aa5.74□□□□□ -1.49
VPS29-202ENST00000447578 BRINP2Q9C0B6 783 aa5.74□□□□□ -1.49
VPS29-202ENST00000447578 KANSL2Q9H9L4 492 aa5.74□□□□□ -1.49
VPS29-202ENST00000447578 COL4A3BPQ9Y5P4 624 aa5.74□□□□□ -1.49
VPS29-202ENST00000447578 TRAV20A0A0B4J274 112 aa5.73□□□□□ -1.49
VPS29-202ENST00000447578 IQCA1LA6NCM1 817 aa5.73□□□□□ -1.49
VPS29-202ENST00000447578 FAM90A27PA6NNH2 459 aa5.73□□□□□ -1.49
VPS29-202ENST00000447578 TGM1P22735 817 aa5.73□□□□□ -1.49
VPS29-202ENST00000447578 POLD1P28340 1107 aa5.73□□□□□ -1.49
VPS29-202ENST00000447578 RAC3P60763 192 aa5.73□□□□□ -1.49
VPS29-202ENST00000447578 TOP3AQ13472 1001 aaPredicted RBP5.73□□□□□ -1.49
VPS29-202ENST00000447578 MTERF2Q49AM1 385 aa5.73□□□□□ -1.49
VPS29-202ENST00000447578 USP39Q53GS9 565 aaKnown RBP5.73□□□□□ -1.49
VPS29-202ENST00000447578 BTBD8Q5XKL5 378 aa5.73□□□□□ -1.49
VPS29-202ENST00000447578 Q6ZSN1 163 aa5.73□□□□□ -1.49
VPS29-202ENST00000447578 DPYSL5Q9BPU6 564 aa5.73□□□□□ -1.49
VPS29-202ENST00000447578 NACADO15069 1562 aa5.72□□□□□ -1.49
VPS29-202ENST00000447578 COMTP21964 271 aa5.72□□□□□ -1.49
VPS29-202ENST00000447578 GYS2P54840 703 aa5.72□□□□□ -1.49
VPS29-202ENST00000447578 DGCR2P98153 550 aa5.72□□□□□ -1.49
VPS29-202ENST00000447578 RNF207Q6ZRF8 634 aa5.72□□□□□ -1.49
VPS29-202ENST00000447578 ARHGAP36Q6ZRI8 547 aa5.72□□□□□ -1.49
VPS29-202ENST00000447578 ZNF503Q96F45 646 aa5.72□□□□□ -1.49
VPS29-202ENST00000447578 ALG1Q9BT22 464 aa5.72□□□□□ -1.49
VPS29-202ENST00000447578 PCDH12Q9NPG4 1184 aa5.72□□□□□ -1.49
VPS29-202ENST00000447578 RIC8BQ9NVN3 520 aa5.72□□□□□ -1.49
VPS29-202ENST00000447578 PRKAB1Q9Y478 270 aa5.72□□□□□ -1.49
VPS29-202ENST00000447578 MARCH6O60337 910 aa5.71□□□□□ -1.5
VPS29-202ENST00000447578 PTPN1P18031 435 aaKnown RBP5.71□□□□□ -1.5
VPS29-202ENST00000447578 CR2P20023 1033 aa5.71□□□□□ -1.5
VPS29-202ENST00000447578 ACO1P21399 889 aaKnown RBP5.71□□□□□ -1.5
VPS29-202ENST00000447578 FHL2Q14192 279 aa5.71□□□□□ -1.5
VPS29-202ENST00000447578 TBR1Q16650 682 aa5.71□□□□□ -1.5
VPS29-202ENST00000447578 ZNF568Q3ZCX4 644 aa5.71□□□□□ -1.5
VPS29-202ENST00000447578 TAF7LQ5H9L4 462 aa5.71□□□□□ -1.5
VPS29-202ENST00000447578 MIIPQ5JXC2 388 aa5.71□□□□□ -1.5
VPS29-202ENST00000447578 TMX1Q9H3N1 280 aa5.71□□□□□ -1.5
VPS29-202ENST00000447578 ARHGAP28Q9P2N2 729 aa5.71□□□□□ -1.5
VPS29-202ENST00000447578 OAZ3Q9UMX2 235 aa5.71□□□□□ -1.5
VPS29-202ENST00000447578 RSF1Q96T23 1441 aaPredicted RBP5.71□□□□□ -1.5
VPS29-202ENST00000447578 KDM2BQ8NHM5 1336 aa5.71□□□□□ -1.5
VPS29-202ENST00000447578 MATN2O00339 956 aa5.7□□□□□ -1.5
VPS29-202ENST00000447578 CDC14BO60729 498 aa5.7□□□□□ -1.5
VPS29-202ENST00000447578 AMY2AP04746 511 aa5.7□□□□□ -1.5
VPS29-202ENST00000447578 AMY2BP19961 511 aa5.7□□□□□ -1.5
VPS29-202ENST00000447578 ADCY8P40145 1251 aa5.7□□□□□ -1.5
VPS29-202ENST00000447578 WDR72Q3MJ13 1102 aa5.7□□□□□ -1.5
VPS29-202ENST00000447578 C16orf86Q6ZW13 317 aa5.7□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 76.9 ms