RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 MYOCDQ8IZQ8 938 aa20.16■□□□□ 0.82
CCDC88C-203ENST00000389856 BANK1Q8NDB2 785 aa20.16■□□□□ 0.82
CCDC88C-203ENST00000389856 TRIM47Q96LD4 638 aa20.16■□□□□ 0.82
CCDC88C-203ENST00000389856 TIPINQ9BVW5 301 aa20.16■□□□□ 0.82
CCDC88C-203ENST00000389856 GPBP1L1Q9HC44 474 aaPredicted RBP20.16■□□□□ 0.82
CCDC88C-203ENST00000389856 ODF2LQ9ULJ1 636 aa20.16■□□□□ 0.82
CCDC88C-203ENST00000389856 ATP9AO75110 1047 aa20.16■□□□□ 0.82
CCDC88C-203ENST00000389856 LRRC63Q05C16 580 aa20.16■□□□□ 0.82
CCDC88C-203ENST00000389856 GIT2Q14161 759 aa20.16■□□□□ 0.82
CCDC88C-203ENST00000389856 NEDD9Q14511 834 aa20.16■□□□□ 0.82
CCDC88C-203ENST00000389856 FAM110CQ1W6H9 321 aa20.16■□□□□ 0.82
CCDC88C-203ENST00000389856 CDKAL1Q5VV42 579 aa20.16■□□□□ 0.82
CCDC88C-203ENST00000389856 STXBP4Q6ZWJ1 553 aa20.16■□□□□ 0.82
CCDC88C-203ENST00000389856 RASAL3Q86YV0 1011 aa20.16■□□□□ 0.82
CCDC88C-203ENST00000389856 THAP9Q9H5L6 903 aa20.16■□□□□ 0.82
CCDC88C-203ENST00000389856 SLC39A2Q9NP94 309 aa20.16■□□□□ 0.82
CCDC88C-203ENST00000389856 MAGEC2Q9UBF1 373 aaPredicted RBP20.16■□□□□ 0.82
CCDC88C-203ENST00000389856 SEL1LQ9UBV2 794 aa20.16■□□□□ 0.82
CCDC88C-203ENST00000389856 MAPK8IP1Q9UQF2 711 aa20.16■□□□□ 0.82
CCDC88C-203ENST00000389856 ARSHQ5FYA8 562 aa20.15■□□□□ 0.82
CCDC88C-203ENST00000389856 RINT1Q6NUQ1 792 aa20.15■□□□□ 0.82
CCDC88C-203ENST00000389856 OTUD6AQ7L8S5 288 aa20.15■□□□□ 0.82
CCDC88C-203ENST00000389856 ANKRD13CQ8N6S4 541 aa20.15■□□□□ 0.82
CCDC88C-203ENST00000389856 SMC1BQ8NDV3 1235 aa20.15■□□□□ 0.82
CCDC88C-203ENST00000389856 PIGOQ8TEQ8 1089 aa20.15■□□□□ 0.82
CCDC88C-203ENST00000389856 ZHX3Q9H4I2 956 aa20.15■□□□□ 0.82
CCDC88C-203ENST00000389856 ANKEF1Q9NU02 776 aa20.15■□□□□ 0.82
CCDC88C-203ENST00000389856 PEX10O60683 326 aa20.14■□□□□ 0.81
CCDC88C-203ENST00000389856 RGS20O76081 388 aa20.14■□□□□ 0.81
CCDC88C-203ENST00000389856 FAM13AO94988 1023 aa20.14■□□□□ 0.81
CCDC88C-203ENST00000389856 EEF1GP26641 437 aaKnown RBP20.14■□□□□ 0.81
CCDC88C-203ENST00000389856 MAPK4P31152 587 aa20.14■□□□□ 0.81
CCDC88C-203ENST00000389856 SAPCD2Q86UD0 394 aa20.14■□□□□ 0.81
CCDC88C-203ENST00000389856 KIAA0895Q8NCT3 520 aa20.14■□□□□ 0.81
CCDC88C-203ENST00000389856 CCDC102AQ96A19 550 aa20.14■□□□□ 0.81
CCDC88C-203ENST00000389856 REEP2Q9BRK0 252 aa20.14■□□□□ 0.81
CCDC88C-203ENST00000389856 TMX1Q9H3N1 280 aa20.14■□□□□ 0.81
CCDC88C-203ENST00000389856 PASKQ96RG2 1323 aa20.14■□□□□ 0.81
CCDC88C-203ENST00000389856 PLXNB2O15031 1838 aa20.13■□□□□ 0.81
CCDC88C-203ENST00000389856 GUCY2CP25092 1073 aa20.13■□□□□ 0.81
CCDC88C-203ENST00000389856 TBX2Q13207 712 aaPredicted RBP20.13■□□□□ 0.81
CCDC88C-203ENST00000389856 SEPT14Q6ZU15 432 aa20.13■□□□□ 0.81
CCDC88C-203ENST00000389856 SAMSN1Q9NSI8 373 aaKnown RBP20.13■□□□□ 0.81
CCDC88C-203ENST00000389856 SLC5A4Q9NY91 659 aa20.13■□□□□ 0.81
CCDC88C-203ENST00000389856 LRRC37A2A6NM11 1700 aa20.13■□□□□ 0.81
CCDC88C-203ENST00000389856 ZNFX1Q9P2E3 1918 aaKnown RBP20.13■□□□□ 0.81
CCDC88C-203ENST00000389856 CCNE2O96020 404 aa20.13■□□□□ 0.81
CCDC88C-203ENST00000389856 YWHABP31946 246 aaKnown RBP20.13■□□□□ 0.81
CCDC88C-203ENST00000389856 SREBF2Q12772 1141 aa20.13■□□□□ 0.81
CCDC88C-203ENST00000389856 CENPPQ6IPU0 288 aa20.13■□□□□ 0.81
CCDC88C-203ENST00000389856 C1orf186Q6ZWK4 172 aa20.13■□□□□ 0.81
CCDC88C-203ENST00000389856 CSGALNACT2Q8N6G5 542 aa20.13■□□□□ 0.81
CCDC88C-203ENST00000389856 KIF18AQ8NI77 898 aa20.13■□□□□ 0.81
CCDC88C-203ENST00000389856 MORC4Q8TE76 937 aa20.13■□□□□ 0.81
CCDC88C-203ENST00000389856 MED15Q96RN5 788 aa20.13■□□□□ 0.81
CCDC88C-203ENST00000389856 PARVGQ9HBI0 331 aa20.13■□□□□ 0.81
CCDC88C-203ENST00000389856 OLFML3Q9NRN5 406 aa20.13■□□□□ 0.81
CCDC88C-203ENST00000389856 ASTN1O14525 1302 aa20.12■□□□□ 0.81
CCDC88C-203ENST00000389856 PGK2P07205 417 aa20.12■□□□□ 0.81
CCDC88C-203ENST00000389856 ACTR2P61160 394 aa20.12■□□□□ 0.81
CCDC88C-203ENST00000389856 SPECC1LQ69YQ0 1117 aa20.12■□□□□ 0.81
CCDC88C-203ENST00000389856 TTI2Q6NXR4 508 aa20.12■□□□□ 0.81
CCDC88C-203ENST00000389856 PPP4R3CPQ6ZMV5 832 aa20.12■□□□□ 0.81
CCDC88C-203ENST00000389856 ZNF467Q7Z7K2 595 aaPredicted RBP20.12■□□□□ 0.81
CCDC88C-203ENST00000389856 RUSC1Q9BVN2 902 aa20.12■□□□□ 0.81
CCDC88C-203ENST00000389856 PORCNQ9H237 461 aa20.12■□□□□ 0.81
CCDC88C-203ENST00000389856 EFCC1Q9HA90 598 aa20.12■□□□□ 0.81
CCDC88C-203ENST00000389856 UBE4BO95155 1302 aa20.11■□□□□ 0.81
CCDC88C-203ENST00000389856 NPHP3-ACAD11A0A0J9YXS1 232 aa20.11■□□□□ 0.81
CCDC88C-203ENST00000389856 GOLGA6L9A6NEM1 432 aa20.11■□□□□ 0.81
CCDC88C-203ENST00000389856 SLC10A3P09131 477 aa20.11■□□□□ 0.81
CCDC88C-203ENST00000389856 RAD51AP2Q09MP3 1159 aa20.11■□□□□ 0.81
CCDC88C-203ENST00000389856 PADI6Q6TGC4 694 aa20.11■□□□□ 0.81
CCDC88C-203ENST00000389856 SLC17A8Q8NDX2 589 aa20.11■□□□□ 0.81
CCDC88C-203ENST00000389856 LIMA1Q9UHB6 759 aaKnown RBP20.11■□□□□ 0.81
CCDC88C-203ENST00000389856 TLL2Q9Y6L7 1015 aa20.11■□□□□ 0.81
CCDC88C-203ENST00000389856 A0A1B0GTH6 734 aa20.1■□□□□ 0.81
CCDC88C-203ENST00000389856 KCNJ18B7U540 433 aa20.1■□□□□ 0.81
CCDC88C-203ENST00000389856 BACH1O14867 736 aa20.1■□□□□ 0.81
CCDC88C-203ENST00000389856 ARHGAP6O43182 974 aa20.1■□□□□ 0.81
CCDC88C-203ENST00000389856 SUPT20HL2P0C7V6 817 aa20.1■□□□□ 0.81
CCDC88C-203ENST00000389856 KCNJ12Q14500 433 aa20.1■□□□□ 0.81
CCDC88C-203ENST00000389856 E4F1Q66K89 784 aaPredicted RBP20.1■□□□□ 0.81
CCDC88C-203ENST00000389856 HHIPL1Q96JK4 782 aa20.1■□□□□ 0.81
CCDC88C-203ENST00000389856 DRC1Q96MC2 740 aa20.1■□□□□ 0.81
CCDC88C-203ENST00000389856 PTPN18Q99952 460 aa20.1■□□□□ 0.81
CCDC88C-203ENST00000389856 GABBR1Q9UBS5 961 aa20.1■□□□□ 0.81
CCDC88C-203ENST00000389856 DIS3Q9Y2L1 958 aaKnown RBP20.1■□□□□ 0.81
CCDC88C-203ENST00000389856 ZSCAN12O43309 604 aa20.09■□□□□ 0.81
CCDC88C-203ENST00000389856 UBA1P22314 1058 aaKnown RBP20.09■□□□□ 0.81
CCDC88C-203ENST00000389856 RARRES1P49788 294 aa20.09■□□□□ 0.81
CCDC88C-203ENST00000389856 ALCAMQ13740 583 aa20.09■□□□□ 0.81
CCDC88C-203ENST00000389856 NR1I3Q14994 352 aa20.09■□□□□ 0.81
CCDC88C-203ENST00000389856 TAF1CQ15572 869 aaPredicted RBP20.09■□□□□ 0.81
CCDC88C-203ENST00000389856 TCP11X2Q5H9J9 407 aa20.09■□□□□ 0.81
CCDC88C-203ENST00000389856 FAM160B1Q5W0V3 765 aa20.09■□□□□ 0.81
CCDC88C-203ENST00000389856 METTL7BQ6UX53 244 aa20.09■□□□□ 0.81
CCDC88C-203ENST00000389856 ABHD15Q6UXT9 468 aa20.09■□□□□ 0.81
CCDC88C-203ENST00000389856 PLEKHH3Q7Z736 793 aa20.09■□□□□ 0.81
CCDC88C-203ENST00000389856 SFR1Q86XK3 245 aa20.09■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms