RNA–Protein interactions for RNA: YDL060W

TSR1, Transcript of Protein required for processing of 20S pre-rRNA in the cytoplasm, yeast

Gene TSR1, Length 2,367 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TSR1	YDL060W	YPR022C	Q12139	1133 aa		3.59	□□□□□ -1.83
TSR1	YDL060W	BUG1	Q12191	341 aa		3.59	□□□□□ -1.83
TSR1	YDL060W	ILV5	P06168	395 aa	Known RBP	3.59	□□□□□ -1.84
TSR1	YDL060W	RPL31B	P0C2H9	113 aa	Known RBP	3.59	□□□□□ -1.84
TSR1	YDL060W	MRPL9	P31334	269 aa		3.59	□□□□□ -1.84
TSR1	YDL060W	MRP4	P32902	394 aa		3.59	□□□□□ -1.84
TSR1	YDL060W	SNU114	P36048	1008 aa	Known RBP	3.59	□□□□□ -1.84
TSR1	YDL060W	RPF2	P36160	344 aa	Known RBP	3.59	□□□□□ -1.84
TSR1	YDL060W	YPT10	P38146	199 aa		3.59	□□□□□ -1.84
TSR1	YDL060W	MSG5	P38590	489 aa		3.59	□□□□□ -1.84
TSR1	YDL060W	RFC3	P38629	340 aa		3.59	□□□□□ -1.84
TSR1	YDL060W	GRE3	P38715	327 aa	Known RBP RIP-Chip data	3.59	□□□□□ -1.84	not detected
TSR1	YDL060W	YMR147W	P40218	223 aa	Known RBP	3.59	□□□□□ -1.84
TSR1	YDL060W	VHS2	P40463	436 aa		3.59	□□□□□ -1.84
TSR1	YDL060W	SNM1	P40993	198 aa		3.59	□□□□□ -1.84
TSR1	YDL060W	YFR020W	P43600	232 aa		3.59	□□□□□ -1.84
TSR1	YDL060W	TOM22	P49334	152 aa		3.59	□□□□□ -1.84
TSR1	YDL060W	KEL2	P50090	882 aa		3.59	□□□□□ -1.84
TSR1	YDL060W	COS6	P53344	381 aa		3.59	□□□□□ -1.84
TSR1	YDL060W	BUD17	P53727	317 aa		3.59	□□□□□ -1.84
TSR1	YDL060W	TUS1	Q06412	1307 aa		3.59	□□□□□ -1.84
TSR1	YDL060W	WHI2	P12611	486 aa		3.58	□□□□□ -1.84
TSR1	YDL060W	BMH1	P29311	267 aa	Known RBP	3.58	□□□□□ -1.84
TSR1	YDL060W	MEI4	P29467	408 aa		3.58	□□□□□ -1.84
TSR1	YDL060W	SOF1	P33750	489 aa	Known RBP	3.58	□□□□□ -1.84
TSR1	YDL060W	MRX3	P38172	270 aa		3.58	□□□□□ -1.84
TSR1	YDL060W	PCF11	P39081	626 aa	Predicted RBP	3.58	□□□□□ -1.84
TSR1	YDL060W	YHB1	P39676	399 aa	Known RBP	3.58	□□□□□ -1.84
TSR1	YDL060W	YIP5	P53108	310 aa		3.58	□□□□□ -1.84
TSR1	YDL060W	YGR127W	P53275	312 aa		3.58	□□□□□ -1.84
TSR1	YDL060W	COQ6	P53318	479 aa		3.58	□□□□□ -1.84
TSR1	YDL060W	RTC4	P53850	401 aa		3.58	□□□□□ -1.84
TSR1	YDL060W	OCA2	P53949	197 aa		3.58	□□□□□ -1.84
TSR1	YDL060W	YML053C	Q04978	212 aa		3.58	□□□□□ -1.84
TSR1	YDL060W	FUS2	Q05670	677 aa		3.58	□□□□□ -1.84
TSR1	YDL060W	HCR1	Q05775	265 aa	Known RBP	3.58	□□□□□ -1.84
TSR1	YDL060W	ASA1	Q06822	443 aa		3.58	□□□□□ -1.84
TSR1	YDL060W	UIP4	Q08926	304 aa		3.58	□□□□□ -1.84
TSR1	YDL060W	Q0010	Q9ZZX9	128 aa		3.58	□□□□□ -1.84
TSR1	YDL060W	RSF2	P46974	1380 aa		3.58	□□□□□ -1.84
TSR1	YDL060W	TDH1	P00360	332 aa	Known RBP	3.58	□□□□□ -1.84
TSR1	YDL060W	CAR1	P00812	333 aa	Known RBP	3.58	□□□□□ -1.84
TSR1	YDL060W	PET494	P07390	489 aa	Predicted RBP	3.58	□□□□□ -1.84
TSR1	YDL060W	LAC1	P28496	418 aa		3.58	□□□□□ -1.84
TSR1	YDL060W	VPH2	P32341	215 aa		3.58	□□□□□ -1.84
TSR1	YDL060W	TPO5	P36029	618 aa		3.58	□□□□□ -1.84
TSR1	YDL060W	YKL023W	P36103	277 aa	Known RBP	3.58	□□□□□ -1.84
TSR1	YDL060W	ASC1	P38011	319 aa	Known RBP	3.58	□□□□□ -1.84
TSR1	YDL060W	YBR139W	P38109	508 aa		3.58	□□□□□ -1.84
TSR1	YDL060W	MMS4	P38257	691 aa		3.58	□□□□□ -1.84
TSR1	YDL060W	DED81	P38707	554 aa	Known RBP	3.58	□□□□□ -1.84
TSR1	YDL060W	DIE2	P50076	525 aa		3.58	□□□□□ -1.84
TSR1	YDL060W	MPS2	P53159	387 aa		3.58	□□□□□ -1.84
TSR1	YDL060W	PNC1	P53184	216 aa	Known RBP	3.58	□□□□□ -1.84
TSR1	YDL060W	DIS3	Q08162	1001 aa	Known RBP	3.58	□□□□□ -1.84
TSR1	YDL060W	MED2	Q12124	431 aa		3.58	□□□□□ -1.84
TSR1	YDL060W	GET4	Q12125	312 aa		3.58	□□□□□ -1.84
TSR1	YDL060W	VAM3	Q12241	283 aa		3.58	□□□□□ -1.84
TSR1	YDL060W	MTR10	Q99189	972 aa		3.58	□□□□□ -1.84
TSR1	YDL060W	BNI1	P41832	1953 aa		3.57	□□□□□ -1.84
TSR1	YDL060W	PGK1	P00560	416 aa	Known RBP	3.57	□□□□□ -1.84
TSR1	YDL060W	PUT2	P07275	575 aa		3.57	□□□□□ -1.84
TSR1	YDL060W	UNG1	P12887	359 aa		3.57	□□□□□ -1.84
TSR1	YDL060W	ALG1	P16661	449 aa		3.57	□□□□□ -1.84
TSR1	YDL060W	RRT12	P25381	491 aa		3.57	□□□□□ -1.84
TSR1	YDL060W	HIR2	P32480	875 aa		3.57	□□□□□ -1.84
TSR1	YDL060W	ARA1	P38115	344 aa		3.57	□□□□□ -1.84
TSR1	YDL060W	ICS2	P38284	255 aa		3.57	□□□□□ -1.84
TSR1	YDL060W	FCY21	P40039	528 aa		3.57	□□□□□ -1.84
TSR1	YDL060W	ULP2	P40537	1034 aa	Predicted RBP	3.57	□□□□□ -1.84
TSR1	YDL060W	OPT1	P40897	799 aa		3.57	□□□□□ -1.84
TSR1	YDL060W	CIN1	P40987	1014 aa		3.57	□□□□□ -1.84
TSR1	YDL060W	PTR3	P43606	678 aa		3.57	□□□□□ -1.84
TSR1	YDL060W	SMA2	Q04658	369 aa		3.57	□□□□□ -1.84
TSR1	YDL060W	TEN1	Q07921	160 aa		3.57	□□□□□ -1.84
TSR1	YDL060W	TAF10	Q12030	206 aa		3.57	□□□□□ -1.84
TSR1	YDL060W	YDL109C	Q12103	647 aa		3.57	□□□□□ -1.84
TSR1	YDL060W	AAC1	P04710	309 aa		3.56	□□□□□ -1.84
TSR1	YDL060W	CBF1	P17106	351 aa		3.56	□□□□□ -1.84
TSR1	YDL060W	SAG1	P20840	650 aa		3.56	□□□□□ -1.84
TSR1	YDL060W	HMX1	P32339	317 aa		3.56	□□□□□ -1.84
TSR1	YDL060W	PTK1	P36002	662 aa	Predicted RBP	3.56	□□□□□ -1.84
TSR1	YDL060W	MRPL37	P36532	105 aa		3.56	□□□□□ -1.84
TSR1	YDL060W	TRM5	P38793	499 aa		3.56	□□□□□ -1.84
TSR1	YDL060W	XBP1	P40489	647 aa		3.56	□□□□□ -1.84
TSR1	YDL060W	MSC1	Q03104	513 aa		3.56	□□□□□ -1.84
TSR1	YDL060W	EMI2	Q04409	500 aa	Known RBP	3.56	□□□□□ -1.84
TSR1	YDL060W	YLR297W	Q05899	129 aa		3.56	□□□□□ -1.84
TSR1	YDL060W	STE2	D6VTK4	431 aa		3.56	□□□□□ -1.84
TSR1	YDL060W	CHO2	P05374	869 aa	Known RBP	3.56	□□□□□ -1.84
TSR1	YDL060W	LEU4	P06208	619 aa	Known RBP	3.56	□□□□□ -1.84
TSR1	YDL060W	SPS4	P09937	338 aa		3.56	□□□□□ -1.84
TSR1	YDL060W	GCN3	P14741	305 aa		3.56	□□□□□ -1.84
TSR1	YDL060W	GRX2	P17695	143 aa	Known RBP	3.56	□□□□□ -1.84
TSR1	YDL060W	RIM1	P32445	135 aa	Known RBP	3.56	□□□□□ -1.84
TSR1	YDL060W	HOT13	P36078	116 aa		3.56	□□□□□ -1.84
TSR1	YDL060W	ATP3	P38077	311 aa	Known RBP	3.56	□□□□□ -1.84
TSR1	YDL060W	FES1	P38260	290 aa		3.56	□□□□□ -1.84
TSR1	YDL060W	YHI9	P38765	294 aa		3.56	□□□□□ -1.84
TSR1	YDL060W	SPL2	P38839	148 aa		3.56	□□□□□ -1.84

Retrieved 100 of 5,963 RNA–protein pairs in 26.9 ms