RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 LEXMQ3ZCV2 418 aa15.55■□□□□ 0.08
TRIM28-211ENST00000597968 WWC2Q6AWC2 1192 aa15.55■□□□□ 0.08
TRIM28-211ENST00000597968 FAM117BQ6P1L5 589 aa15.55■□□□□ 0.08
TRIM28-211ENST00000597968 TSHZ1Q6ZSZ6 1077 aa15.55■□□□□ 0.08
TRIM28-211ENST00000597968 SPRED2Q7Z698 418 aa15.55■□□□□ 0.08
TRIM28-211ENST00000597968 TMEM192Q8IY95 271 aa15.55■□□□□ 0.08
TRIM28-211ENST00000597968 NME8Q8N427 588 aa15.55■□□□□ 0.08
TRIM28-211ENST00000597968 FBXL16Q8N461 479 aa15.55■□□□□ 0.08
TRIM28-211ENST00000597968 CCDC12Q8WUD4 166 aaPredicted RBP15.55■□□□□ 0.08
TRIM28-211ENST00000597968 IL17RAQ96F46 866 aa15.55■□□□□ 0.08
TRIM28-211ENST00000597968 C17orf80Q9BSJ5 609 aa15.55■□□□□ 0.08
TRIM28-211ENST00000597968 UBE2ZQ9H832 354 aaPredicted RBP15.55■□□□□ 0.08
TRIM28-211ENST00000597968 RNF216Q9NWF9 866 aaPredicted RBP15.55■□□□□ 0.08
TRIM28-211ENST00000597968 MTUS1Q9ULD2 1270 aa15.55■□□□□ 0.08
TRIM28-211ENST00000597968 M0QZ92 97 aa15.54■□□□□ 0.08
TRIM28-211ENST00000597968 MEIS1O00470 390 aa15.54■□□□□ 0.08
TRIM28-211ENST00000597968 CDC45O75419 566 aa15.54■□□□□ 0.08
TRIM28-211ENST00000597968 SREBF1P36956 1147 aa15.54■□□□□ 0.08
TRIM28-211ENST00000597968 CLK2P49760 499 aaKnown RBP15.54■□□□□ 0.08
TRIM28-211ENST00000597968 ADCY7P51828 1080 aa15.54■□□□□ 0.08
TRIM28-211ENST00000597968 COL9A3Q14050 684 aaPredicted RBP15.54■□□□□ 0.08
TRIM28-211ENST00000597968 FBXO47Q5MNV8 452 aa15.54■□□□□ 0.08
TRIM28-211ENST00000597968 MARCH8Q5T0T0 291 aa15.54■□□□□ 0.08
TRIM28-211ENST00000597968 FIBCD1Q8N539 461 aa15.54■□□□□ 0.08
TRIM28-211ENST00000597968 PLVAPQ9BX97 442 aa15.54■□□□□ 0.08
TRIM28-211ENST00000597968 LRRC2Q9BYS8 371 aa15.54■□□□□ 0.08
TRIM28-211ENST00000597968 ARIH1Q9Y4X5 557 aaPredicted RBP15.54■□□□□ 0.08
TRIM28-211ENST00000597968 PCDHA2Q9Y5H9 948 aa15.54■□□□□ 0.08
TRIM28-211ENST00000597968 KDM3AQ9Y4C1 1321 aa15.53■□□□□ 0.08
TRIM28-211ENST00000597968 SMIM35A0A1B0GVV1 85 aa15.53■□□□□ 0.08
TRIM28-211ENST00000597968 ESYT2A0FGR8 921 aa15.53■□□□□ 0.08
TRIM28-211ENST00000597968 SMCO2A6NFE2 343 aa15.53■□□□□ 0.08
TRIM28-211ENST00000597968 INSRRP14616 1297 aa15.53■□□□□ 0.08
TRIM28-211ENST00000597968 STAT5BP51692 787 aa15.53■□□□□ 0.08
TRIM28-211ENST00000597968 MRPS6P82932 125 aaKnown RBP15.53■□□□□ 0.08
TRIM28-211ENST00000597968 LPIN1Q14693 890 aa15.53■□□□□ 0.08
TRIM28-211ENST00000597968 COL19A1Q14993 1142 aa15.53■□□□□ 0.08
TRIM28-211ENST00000597968 NAALADL2Q58DX5 795 aa15.53■□□□□ 0.08
TRIM28-211ENST00000597968 CLP1Q92989 425 aaKnown RBP15.53■□□□□ 0.08
TRIM28-211ENST00000597968 C11orf84Q9BUA3 381 aaPredicted RBP15.53■□□□□ 0.08
TRIM28-211ENST00000597968 ANO3Q9BYT9 981 aa15.53■□□□□ 0.08
TRIM28-211ENST00000597968 RC3H2Q9HBD1 1191 aaKnown RBP15.53■□□□□ 0.08
TRIM28-211ENST00000597968 FAM50BQ9Y247 325 aa15.53■□□□□ 0.08
TRIM28-211ENST00000597968 TELO2Q9Y4R8 837 aa15.53■□□□□ 0.08
TRIM28-211ENST00000597968 V9GY48 417 aaPredicted RBP15.53■□□□□ 0.08
TRIM28-211ENST00000597968 BDP1A6H8Y1 2624 aa15.52■□□□□ 0.08
TRIM28-211ENST00000597968 ADGRA3Q8IWK6 1321 aa15.52■□□□□ 0.08
TRIM28-211ENST00000597968 NCOR1O75376 2440 aa15.52■□□□□ 0.08
TRIM28-211ENST00000597968 IGKV6D-21A0A0A0MT36 114 aa15.52■□□□□ 0.08
TRIM28-211ENST00000597968 hCG_1642624A0A1W2PR95 340 aa15.52■□□□□ 0.08
TRIM28-211ENST00000597968 GOLGA8AA7E2F4 631 aa15.52■□□□□ 0.08
TRIM28-211ENST00000597968 GOLGA8BA8MQT2 603 aa15.52■□□□□ 0.08
TRIM28-211ENST00000597968 STXBP3O00186 592 aa15.52■□□□□ 0.08
TRIM28-211ENST00000597968 ENPP3O14638 875 aa15.52■□□□□ 0.08
TRIM28-211ENST00000597968 EPB41L2O43491 1005 aaKnown RBP15.52■□□□□ 0.08
TRIM28-211ENST00000597968 UPP2O95045 317 aa15.52■□□□□ 0.08
TRIM28-211ENST00000597968 CYP3A4P08684 503 aa15.52■□□□□ 0.08
TRIM28-211ENST00000597968 GHRP10912 638 aa15.52■□□□□ 0.08
TRIM28-211ENST00000597968 COL9A1P20849 921 aa15.52■□□□□ 0.08
TRIM28-211ENST00000597968 MARK3P27448 753 aa15.52■□□□□ 0.08
TRIM28-211ENST00000597968 ACTR2P61160 394 aa15.52■□□□□ 0.08
TRIM28-211ENST00000597968 SETQ01105 290 aaPredicted RBP15.52■□□□□ 0.08
TRIM28-211ENST00000597968 GPM6BQ13491 265 aa15.52■□□□□ 0.08
TRIM28-211ENST00000597968 ODR4Q5SWX8 454 aa15.52■□□□□ 0.08
TRIM28-211ENST00000597968 RUFY4Q6ZNE9 571 aa15.52■□□□□ 0.08
TRIM28-211ENST00000597968 ZNF710Q8N1W2 664 aa15.52■□□□□ 0.08
TRIM28-211ENST00000597968 BANK1Q8NDB2 785 aa15.52■□□□□ 0.08
TRIM28-211ENST00000597968 NEK9Q8TD19 979 aa15.52■□□□□ 0.08
TRIM28-211ENST00000597968 DNAJB3Q8WWF6 145 aa15.52■□□□□ 0.08
TRIM28-211ENST00000597968 KCNB2Q92953 911 aa15.52■□□□□ 0.08
TRIM28-211ENST00000597968 ZNF689Q96CS4 500 aaPredicted RBP15.52■□□□□ 0.08
TRIM28-211ENST00000597968 PCYT2Q99447 389 aa15.52■□□□□ 0.08
TRIM28-211ENST00000597968 NSUN3Q9H649 340 aaKnown RBP15.52■□□□□ 0.08
TRIM28-211ENST00000597968 AGO4Q9HCK5 861 aaKnown RBP15.52■□□□□ 0.08
TRIM28-211ENST00000597968 CDY2AQ9Y6F7 541 aa15.52■□□□□ 0.08
TRIM28-211ENST00000597968 COL1A2P08123 1366 aa15.51■□□□□ 0.07
TRIM28-211ENST00000597968 NID2Q14112 1375 aa15.51■□□□□ 0.07
TRIM28-211ENST00000597968 KLF18A0A0U1RQI7 1052 aa15.51■□□□□ 0.07
TRIM28-211ENST00000597968 HBP1O60381 514 aa15.51■□□□□ 0.07
TRIM28-211ENST00000597968 GNA11P29992 359 aa15.51■□□□□ 0.07
TRIM28-211ENST00000597968 BMPR1AP36894 532 aa15.51■□□□□ 0.07
TRIM28-211ENST00000597968 PLCB4Q15147 1175 aa15.51■□□□□ 0.07
TRIM28-211ENST00000597968 PFKFB3Q16875 520 aaPredicted RBP15.51■□□□□ 0.07
TRIM28-211ENST00000597968 FAM160B1Q5W0V3 765 aa15.51■□□□□ 0.07
TRIM28-211ENST00000597968 TYW1BQ6NUM6 668 aa15.51■□□□□ 0.07
TRIM28-211ENST00000597968 P2RX5Q93086 422 aa15.51■□□□□ 0.07
TRIM28-211ENST00000597968 PABPC5Q96DU9 382 aaKnown RBP15.51■□□□□ 0.07
TRIM28-211ENST00000597968 ZMYND12Q9H0C1 365 aa15.51■□□□□ 0.07
TRIM28-211ENST00000597968 TBC1D22BQ9NU19 505 aa15.51■□□□□ 0.07
TRIM28-211ENST00000597968 BRPF3Q9ULD4 1205 aa15.51■□□□□ 0.07
TRIM28-211ENST00000597968 TRPC6Q9Y210 931 aa15.51■□□□□ 0.07
TRIM28-211ENST00000597968 TRPV2Q9Y5S1 764 aa15.51■□□□□ 0.07
TRIM28-211ENST00000597968 IGSF9BQ9UPX0 1349 aa15.5■□□□□ 0.07
TRIM28-211ENST00000597968 KAT6AQ92794 2004 aa15.5■□□□□ 0.07
TRIM28-211ENST00000597968 POTEB3A0JP26 581 aa15.5■□□□□ 0.07
TRIM28-211ENST00000597968 DGKIO75912 1065 aa15.5■□□□□ 0.07
TRIM28-211ENST00000597968 STAG3L1P0CL83 205 aa15.5■□□□□ 0.07
TRIM28-211ENST00000597968 ZNF76P36508 570 aa15.5■□□□□ 0.07
TRIM28-211ENST00000597968 METAP2P50579 478 aaKnown RBP eCLIP15.5■□□□□ 0.072e-10■■■□□ 17.6
TRIM28-211ENST00000597968 FGD1P98174 961 aa15.5■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms