RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 EDIL3O43854 480 aa18.37■□□□□ 0.53
TRIM28-206ENST00000595974 CXCL10P02778 98 aa18.37■□□□□ 0.53
TRIM28-206ENST00000595974 FDPSP14324 419 aaKnown RBP18.37■□□□□ 0.53
TRIM28-206ENST00000595974 THPOP40225 353 aa18.37■□□□□ 0.53
TRIM28-206ENST00000595974 STAT5BP51692 787 aa18.37■□□□□ 0.53
TRIM28-206ENST00000595974 KRT76Q01546 638 aa18.37■□□□□ 0.53
TRIM28-206ENST00000595974 GRIK4Q16099 956 aa18.37■□□□□ 0.53
TRIM28-206ENST00000595974 FAM160B1Q5W0V3 765 aa18.37■□□□□ 0.53
TRIM28-206ENST00000595974 MIS18BP1Q6P0N0 1132 aa18.37■□□□□ 0.53
TRIM28-206ENST00000595974 TRAF7Q6Q0C0 670 aa18.37■□□□□ 0.53
TRIM28-206ENST00000595974 ABHD15Q6UXT9 468 aa18.37■□□□□ 0.53
TRIM28-206ENST00000595974 Q7L0L9 218 aa18.37■□□□□ 0.53
TRIM28-206ENST00000595974 SMAP1Q8IYB5 467 aaPredicted RBP18.37■□□□□ 0.53
TRIM28-206ENST00000595974 SLC4A7Q9Y6M7 1214 aa18.37■□□□□ 0.53
TRIM28-206ENST00000595974 CYP3A7-CYP3A51PA0A087WV96 503 aa18.36■□□□□ 0.53
TRIM28-206ENST00000595974 CCDC194A0A1B0GVG4 234 aa18.36■□□□□ 0.53
TRIM28-206ENST00000595974 RRN3P2A6NIE6 340 aa18.36■□□□□ 0.53
TRIM28-206ENST00000595974 BACH1O14867 736 aa18.36■□□□□ 0.53
TRIM28-206ENST00000595974 BAIAP3O94812 1187 aa18.36■□□□□ 0.53
TRIM28-206ENST00000595974 CYP3A7P24462 503 aa18.36■□□□□ 0.53
TRIM28-206ENST00000595974 DNAJB2P25686 324 aa18.36■□□□□ 0.53
TRIM28-206ENST00000595974 ST3GAL1Q11201 340 aa18.36■□□□□ 0.53
TRIM28-206ENST00000595974 Q4G0T1 1027 aa18.36■□□□□ 0.53
TRIM28-206ENST00000595974 TAF2Q6P1X5 1199 aa18.36■□□□□ 0.53
TRIM28-206ENST00000595974 EVPLQ92817 2033 aa18.36■□□□□ 0.53
TRIM28-206ENST00000595974 ZSCAN31Q96LW9 406 aaPredicted RBP18.36■□□□□ 0.53
TRIM28-206ENST00000595974 RIT2Q99578 217 aa18.36■□□□□ 0.53
TRIM28-206ENST00000595974 BRMS1Q9HCU9 246 aa18.36■□□□□ 0.53
TRIM28-206ENST00000595974 SH2B1Q9NRF2 756 aaPredicted RBP18.36■□□□□ 0.53
TRIM28-206ENST00000595974 TUBE1Q9UJT0 475 aa18.36■□□□□ 0.53
TRIM28-206ENST00000595974 TRPC6Q9Y210 931 aa18.36■□□□□ 0.53
TRIM28-206ENST00000595974 MBLAC1A4D2B0 266 aaPredicted RBP18.35■□□□□ 0.53
TRIM28-206ENST00000595974 RSPH10B2B2RC85 870 aa18.35■□□□□ 0.53
TRIM28-206ENST00000595974 MSH4O15457 936 aa18.35■□□□□ 0.53
TRIM28-206ENST00000595974 JAK2O60674 1132 aa18.35■□□□□ 0.53
TRIM28-206ENST00000595974 NBNO60934 754 aa18.35■□□□□ 0.53
TRIM28-206ENST00000595974 DTNBO60941 627 aa18.35■□□□□ 0.53
TRIM28-206ENST00000595974 TDP2O95551 362 aa18.35■□□□□ 0.53
TRIM28-206ENST00000595974 RPLP2P05387 115 aaKnown RBP18.35■□□□□ 0.53
TRIM28-206ENST00000595974 RSPH10BP0C881 870 aa18.35■□□□□ 0.53
TRIM28-206ENST00000595974 GPNMBQ14956 572 aa18.35■□□□□ 0.53
TRIM28-206ENST00000595974 PLCB4Q15147 1175 aa18.35■□□□□ 0.53
TRIM28-206ENST00000595974 RABEP1Q15276 862 aa18.35■□□□□ 0.53
TRIM28-206ENST00000595974 INF2Q27J81 1249 aa18.35■□□□□ 0.53
TRIM28-206ENST00000595974 CNKSR3Q6P9H4 555 aa18.35■□□□□ 0.53
TRIM28-206ENST00000595974 RPAINQ86UA6 219 aa18.35■□□□□ 0.53
TRIM28-206ENST00000595974 CCDC60Q8IWA6 550 aaPredicted RBP18.35■□□□□ 0.53
TRIM28-206ENST00000595974 IL27Q8NEV9 243 aa18.35■□□□□ 0.53
TRIM28-206ENST00000595974 MBOAT7Q96N66 472 aa18.35■□□□□ 0.53
TRIM28-206ENST00000595974 UIMC1Q96RL1 719 aa18.35■□□□□ 0.53
TRIM28-206ENST00000595974 GJB4Q9NTQ9 266 aa18.35■□□□□ 0.53
TRIM28-206ENST00000595974 MTMR10Q9NXD2 777 aa18.35■□□□□ 0.53
TRIM28-206ENST00000595974 LOXHD1Q8IVV2 1947 aa18.35■□□□□ 0.53
TRIM28-206ENST00000595974 CDH23Q9H251 3354 aa18.34■□□□□ 0.53
TRIM28-206ENST00000595974 WDR64B1ANS9 1081 aa18.34■□□□□ 0.53
TRIM28-206ENST00000595974 GAS7O60861 476 aa18.34■□□□□ 0.53
TRIM28-206ENST00000595974 INSRRP14616 1297 aa18.34■□□□□ 0.53
TRIM28-206ENST00000595974 GCFC2P16383 781 aaKnown RBP18.34■□□□□ 0.53
TRIM28-206ENST00000595974 KRT2P35908 639 aa18.34■□□□□ 0.53
TRIM28-206ENST00000595974 MBTPS1Q14703 1052 aa18.34■□□□□ 0.53
TRIM28-206ENST00000595974 RAB30Q15771 203 aa18.34■□□□□ 0.53
TRIM28-206ENST00000595974 NEK8Q86SG6 692 aa18.34■□□□□ 0.53
TRIM28-206ENST00000595974 CCDC83Q8IWF9 413 aa18.34■□□□□ 0.53
TRIM28-206ENST00000595974 SLC5A5Q92911 643 aa18.34■□□□□ 0.53
TRIM28-206ENST00000595974 SLC9A7Q96T83 725 aa18.34■□□□□ 0.53
TRIM28-206ENST00000595974 LLPHQ9BRT6 129 aaKnown RBP18.34■□□□□ 0.53
TRIM28-206ENST00000595974 TEKT3Q9BXF9 490 aa18.34■□□□□ 0.53
TRIM28-206ENST00000595974 PBX4Q9BYU1 374 aa18.34■□□□□ 0.53
TRIM28-206ENST00000595974 ZNF302Q9NR11 478 aa18.34■□□□□ 0.53
TRIM28-206ENST00000595974 PCDHA10Q9Y5I2 948 aa18.34■□□□□ 0.53
TRIM28-206ENST00000595974 POTEB3A0JP26 581 aa18.33■□□□□ 0.52
TRIM28-206ENST00000595974 GRXCR1A8MXD5 290 aa18.33■□□□□ 0.52
TRIM28-206ENST00000595974 EFCAB14O75071 495 aa18.33■□□□□ 0.52
TRIM28-206ENST00000595974 PSAPP07602 524 aa18.33■□□□□ 0.52
TRIM28-206ENST00000595974 CTSHP09668 335 aa18.33■□□□□ 0.52
TRIM28-206ENST00000595974 ATP2A2P16615 1042 aaKnown RBP18.33■□□□□ 0.52
TRIM28-206ENST00000595974 TRIM29Q14134 588 aa18.33■□□□□ 0.52
TRIM28-206ENST00000595974 MARCH8Q5T0T0 291 aa18.33■□□□□ 0.52
TRIM28-206ENST00000595974 LRCH2Q5VUJ6 765 aa18.33■□□□□ 0.52
TRIM28-206ENST00000595974 PDXDC2PQ6P474 469 aa18.33■□□□□ 0.52
TRIM28-206ENST00000595974 POTEBQ6S5H4 581 aa18.33■□□□□ 0.52
TRIM28-206ENST00000595974 RSPH3Q86UC2 560 aa18.33■□□□□ 0.52
TRIM28-206ENST00000595974 OXER1Q8TDS5 423 aa18.33■□□□□ 0.52
TRIM28-206ENST00000595974 ATP8B4Q8TF62 1192 aa18.33■□□□□ 0.52
TRIM28-206ENST00000595974 TIFAQ96CG3 184 aa18.33■□□□□ 0.52
TRIM28-206ENST00000595974 NAP1L4Q99733 375 aaKnown RBP18.33■□□□□ 0.52
TRIM28-206ENST00000595974 DDX25Q9UHL0 483 aaKnown RBP18.33■□□□□ 0.52
TRIM28-206ENST00000595974 MSRAQ9UJ68 235 aa18.33■□□□□ 0.52
TRIM28-206ENST00000595974 COL1A2P08123 1366 aa18.32■□□□□ 0.52
TRIM28-206ENST00000595974 IGSF9BQ9UPX0 1349 aa18.32■□□□□ 0.52
TRIM28-206ENST00000595974 HBP1O60381 514 aa18.32■□□□□ 0.52
TRIM28-206ENST00000595974 MMP1P03956 469 aa18.32■□□□□ 0.52
TRIM28-206ENST00000595974 SFNP31947 248 aa18.32■□□□□ 0.52
TRIM28-206ENST00000595974 KCNJ6P48051 423 aa18.32■□□□□ 0.52
TRIM28-206ENST00000595974 JAK3P52333 1124 aa18.32■□□□□ 0.52
TRIM28-206ENST00000595974 IGBP1P78318 339 aa18.32■□□□□ 0.52
TRIM28-206ENST00000595974 LETM2Q2VYF4 491 aa18.32■□□□□ 0.52
TRIM28-206ENST00000595974 FAM26DQ5JW98 314 aa18.32■□□□□ 0.52
TRIM28-206ENST00000595974 PPP4R3AQ6IN85 833 aa18.32■□□□□ 0.52
TRIM28-206ENST00000595974 SWSAP1Q6NVH7 229 aa18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms