RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 VPS54Q9P1Q0 977 aa20.24■□□□□ 0.83
HDDC3-205ENST00000559898 MTUS1Q9ULD2 1270 aa20.24■□□□□ 0.83
HDDC3-205ENST00000559898 MTCH2Q9Y6C9 303 aa20.24■□□□□ 0.83
HDDC3-205ENST00000559898 NRCAMQ92823 1304 aa20.24■□□□□ 0.83
HDDC3-205ENST00000559898 WDR81Q562E7 1941 aa20.23■□□□□ 0.83
HDDC3-205ENST00000559898 hCG_1984214I3L0E3 225 aa20.23■□□□□ 0.83
HDDC3-205ENST00000559898 FOSP01100 380 aaPredicted RBP20.23■□□□□ 0.83
HDDC3-205ENST00000559898 INSRRP14616 1297 aa20.23■□□□□ 0.83
HDDC3-205ENST00000559898 EVCP57679 992 aa20.23■□□□□ 0.83
HDDC3-205ENST00000559898 GRB10Q13322 594 aa20.23■□□□□ 0.83
HDDC3-205ENST00000559898 AP3B2Q13367 1082 aa20.23■□□□□ 0.83
HDDC3-205ENST00000559898 PLCB4Q15147 1175 aa20.23■□□□□ 0.83
HDDC3-205ENST00000559898 FAM26DQ5JW98 314 aa20.23■□□□□ 0.83
HDDC3-205ENST00000559898 MYOCDQ8IZQ8 938 aa20.23■□□□□ 0.83
HDDC3-205ENST00000559898 ZNF713Q8N859 430 aaPredicted RBP20.23■□□□□ 0.83
HDDC3-205ENST00000559898 GDPD5Q8WTR4 605 aa20.23■□□□□ 0.83
HDDC3-205ENST00000559898 DNAJB3Q8WWF6 145 aa20.23■□□□□ 0.83
HDDC3-205ENST00000559898 AIFM3Q96NN9 605 aa20.23■□□□□ 0.83
HDDC3-205ENST00000559898 ERAP1Q9NZ08 941 aa20.23■□□□□ 0.83
HDDC3-205ENST00000559898 NFASCO94856 1347 aa20.23■□□□□ 0.83
HDDC3-205ENST00000559898 EMSYQ7Z589 1322 aa20.23■□□□□ 0.83
HDDC3-205ENST00000559898 MBLAC1A4D2B0 266 aaPredicted RBP20.22■□□□□ 0.83
HDDC3-205ENST00000559898 LINC01553A4QN01 128 aa20.22■□□□□ 0.83
HDDC3-205ENST00000559898 MAFGO15525 162 aa20.22■□□□□ 0.83
HDDC3-205ENST00000559898 GHRP10912 638 aa20.22■□□□□ 0.83
HDDC3-205ENST00000559898 STK3Q13188 491 aa20.22■□□□□ 0.83
HDDC3-205ENST00000559898 PLA2G4DQ86XP0 818 aa20.22■□□□□ 0.83
HDDC3-205ENST00000559898 SMARCAD1Q9H4L7 1026 aa20.22■□□□□ 0.83
HDDC3-205ENST00000559898 TUBE1Q9UJT0 475 aa20.22■□□□□ 0.83
HDDC3-205ENST00000559898 XIRP2A4UGR9 3374 aa20.21■□□□□ 0.83
HDDC3-205ENST00000559898 ESYT2A0FGR8 921 aa20.21■□□□□ 0.83
HDDC3-205ENST00000559898 KIF28PB7ZC32 967 aa20.21■□□□□ 0.83
HDDC3-205ENST00000559898 ATG7O95352 703 aa20.21■□□□□ 0.83
HDDC3-205ENST00000559898 NEFLP07196 543 aa20.21■□□□□ 0.83
HDDC3-205ENST00000559898 GNAT1P11488 350 aa20.21■□□□□ 0.83
HDDC3-205ENST00000559898 IFNAR1P17181 557 aa20.21■□□□□ 0.83
HDDC3-205ENST00000559898 PSMA5P28066 241 aa20.21■□□□□ 0.83
HDDC3-205ENST00000559898 ZNF76P36508 570 aa20.21■□□□□ 0.83
HDDC3-205ENST00000559898 TMEM62Q0P6H9 643 aa20.21■□□□□ 0.83
HDDC3-205ENST00000559898 GJA10Q969M2 543 aa20.21■□□□□ 0.83
HDDC3-205ENST00000559898 RAD9AQ99638 391 aa20.21■□□□□ 0.83
HDDC3-205ENST00000559898 FAM49AQ9H0Q0 323 aaPredicted RBP20.21■□□□□ 0.83
HDDC3-205ENST00000559898 TCF20Q9UGU0 1960 aaKnown RBP20.21■□□□□ 0.83
HDDC3-205ENST00000559898 CCDC196A0A1B0GTZ2 297 aa20.2■□□□□ 0.82
HDDC3-205ENST00000559898 UPP2O95045 317 aa20.2■□□□□ 0.82
HDDC3-205ENST00000559898 CYP3A4P08684 503 aa20.2■□□□□ 0.82
HDDC3-205ENST00000559898 ATP4AP20648 1035 aa20.2■□□□□ 0.82
HDDC3-205ENST00000559898 TFF2Q03403 129 aa20.2■□□□□ 0.82
HDDC3-205ENST00000559898 LPIN1Q14693 890 aa20.2■□□□□ 0.82
HDDC3-205ENST00000559898 ABHD15Q6UXT9 468 aa20.2■□□□□ 0.82
HDDC3-205ENST00000559898 CCDC60Q8IWA6 550 aaPredicted RBP20.2■□□□□ 0.82
HDDC3-205ENST00000559898 LENG9Q96B70 501 aa20.2■□□□□ 0.82
HDDC3-205ENST00000559898 SDF4Q9BRK5 362 aa20.2■□□□□ 0.82
HDDC3-205ENST00000559898 C17orf80Q9BSJ5 609 aa20.2■□□□□ 0.82
HDDC3-205ENST00000559898 CDY2AQ9Y6F7 541 aa20.2■□□□□ 0.82
HDDC3-205ENST00000559898 EVPLQ92817 2033 aa20.2■□□□□ 0.82
HDDC3-205ENST00000559898 CUL9Q8IWT3 2517 aa20.2■□□□□ 0.82
HDDC3-205ENST00000559898 NLRC5Q86WI3 1866 aa20.2■□□□□ 0.82
HDDC3-205ENST00000559898 COL4A6Q14031 1691 aa20.19■□□□□ 0.82
HDDC3-205ENST00000559898 IGKV6D-21A0A0A0MT36 114 aa20.19■□□□□ 0.82
HDDC3-205ENST00000559898 STAT5BP51692 787 aa20.19■□□□□ 0.82
HDDC3-205ENST00000559898 REXO1Q8N1G1 1221 aaKnown RBP20.19■□□□□ 0.82
HDDC3-205ENST00000559898 LINC01599Q8WXQ3 324 aa20.19■□□□□ 0.82
HDDC3-205ENST00000559898 SEPT8Q92599 483 aa20.19■□□□□ 0.82
HDDC3-205ENST00000559898 RNF26Q9BY78 433 aaPredicted RBP20.19■□□□□ 0.82
HDDC3-205ENST00000559898 AGO3Q9H9G7 860 aaKnown RBP20.19■□□□□ 0.82
HDDC3-205ENST00000559898 SUGCTQ9HAC7 445 aa20.19■□□□□ 0.82
HDDC3-205ENST00000559898 C6orf50Q9HD87 102 aa20.19■□□□□ 0.82
HDDC3-205ENST00000559898 PPP4R2Q9NY27 417 aa20.19■□□□□ 0.82
HDDC3-205ENST00000559898 TRPC6Q9Y210 931 aa20.19■□□□□ 0.82
HDDC3-205ENST00000559898 CYP46A1Q9Y6A2 500 aa20.19■□□□□ 0.82
HDDC3-205ENST00000559898 ATG2AQ2TAZ0 1938 aa20.18■□□□□ 0.82
HDDC3-205ENST00000559898 CAND2O75155 1236 aa20.18■□□□□ 0.82
HDDC3-205ENST00000559898 HTRA4P83105 476 aaPredicted RBP20.18■□□□□ 0.82
HDDC3-205ENST00000559898 NPY5RQ15761 445 aa20.18■□□□□ 0.82
HDDC3-205ENST00000559898 NIPA1Q7RTP0 329 aa20.18■□□□□ 0.82
HDDC3-205ENST00000559898 RPAINQ86UA6 219 aa20.18■□□□□ 0.82
HDDC3-205ENST00000559898 IFIH1Q9BYX4 1025 aaKnown RBP20.18■□□□□ 0.82
HDDC3-205ENST00000559898 ZBTB42B2RXF5 422 aa20.17■□□□□ 0.82
HDDC3-205ENST00000559898 IPO5O00410 1097 aaKnown RBP20.17■□□□□ 0.82
HDDC3-205ENST00000559898 AMHP03971 560 aa20.17■□□□□ 0.82
HDDC3-205ENST00000559898 POU3F3P20264 500 aaPredicted RBP20.17■□□□□ 0.82
HDDC3-205ENST00000559898 PRR16Q569H4 304 aa20.17■□□□□ 0.82
HDDC3-205ENST00000559898 FBXO47Q5MNV8 452 aa20.17■□□□□ 0.82
HDDC3-205ENST00000559898 PLPPR4Q7Z2D5 763 aa20.17■□□□□ 0.82
HDDC3-205ENST00000559898 TRMT1LQ7Z2T5 733 aaKnown RBP20.17■□□□□ 0.82
HDDC3-205ENST00000559898 TOP1MTQ969P6 601 aa20.17■□□□□ 0.82
HDDC3-205ENST00000559898 GLT8D2Q9H1C3 349 aa20.17■□□□□ 0.82
HDDC3-205ENST00000559898 AZI2Q9H6S1 392 aa20.17■□□□□ 0.82
HDDC3-205ENST00000559898 CDHR5Q9HBB8 845 aa20.17■□□□□ 0.82
HDDC3-205ENST00000559898 MYH9P35579 1960 aaKnown RBP20.17■□□□□ 0.82
HDDC3-205ENST00000559898 POTEB3A0JP26 581 aa20.16■□□□□ 0.82
HDDC3-205ENST00000559898 EFCAB14O75071 495 aa20.16■□□□□ 0.82
HDDC3-205ENST00000559898 CD52P31358 61 aa20.16■□□□□ 0.82
HDDC3-205ENST00000559898 ERVK-21P61565 698 aa20.16■□□□□ 0.82
HDDC3-205ENST00000559898 MRPS6P82932 125 aaKnown RBP20.16■□□□□ 0.82
HDDC3-205ENST00000559898 AKAP17AQ02040 695 aaKnown RBP20.16■□□□□ 0.82
HDDC3-205ENST00000559898 SWSAP1Q6NVH7 229 aa20.16■□□□□ 0.82
HDDC3-205ENST00000559898 TAF2Q6P1X5 1199 aa20.16■□□□□ 0.82
HDDC3-205ENST00000559898 POTEBQ6S5H4 581 aa20.16■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms