RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 CUTAO60888 179 aa13.03□□□□□ -0.32
YBX3-213ENST00000542641 MYL3P08590 195 aa13.03□□□□□ -0.32
YBX3-213ENST00000542641 SUPT20HL2P0C7V6 817 aa13.03□□□□□ -0.32
YBX3-213ENST00000542641 CST5P28325 142 aaPredicted RBP13.03□□□□□ -0.32
YBX3-213ENST00000542641 LONP1P36776 959 aaKnown RBP13.03□□□□□ -0.32
YBX3-213ENST00000542641 GJA8P48165 433 aa13.03□□□□□ -0.32
YBX3-213ENST00000542641 GRIN1Q05586 938 aa13.03□□□□□ -0.32
YBX3-213ENST00000542641 EPHA7Q15375 998 aa13.03□□□□□ -0.32
YBX3-213ENST00000542641 KCNA10Q16322 511 aa13.03□□□□□ -0.32
YBX3-213ENST00000542641 PCSK9Q8NBP7 692 aaKnown RBP13.03□□□□□ -0.32
YBX3-213ENST00000542641 ERMNQ8TAM6 284 aa13.03□□□□□ -0.32
YBX3-213ENST00000542641 GLG1Q92896 1179 aa13.03□□□□□ -0.32
YBX3-213ENST00000542641 EIF2AK1Q9BQI3 630 aaKnown RBP13.03□□□□□ -0.32
YBX3-213ENST00000542641 CRISPLD2Q9H0B8 497 aa13.03□□□□□ -0.32
YBX3-213ENST00000542641 CSRNP2Q9H175 543 aa13.03□□□□□ -0.32
YBX3-213ENST00000542641 AZI2Q9H6S1 392 aa13.03□□□□□ -0.32
YBX3-213ENST00000542641 STK24Q9Y6E0 443 aa13.03□□□□□ -0.32
YBX3-213ENST00000542641 IGKV6D-21A0A0A0MT36 114 aa13.02□□□□□ -0.33
YBX3-213ENST00000542641 KBTBD13C9JR72 458 aa13.02□□□□□ -0.33
YBX3-213ENST00000542641 DNM1LO00429 736 aa13.02□□□□□ -0.33
YBX3-213ENST00000542641 LGALS2P05162 132 aa13.02□□□□□ -0.33
YBX3-213ENST00000542641 HOXD8P13378 290 aaPredicted RBP13.02□□□□□ -0.33
YBX3-213ENST00000542641 CDC25AP30304 524 aa13.02□□□□□ -0.33
YBX3-213ENST00000542641 STAT5BP51692 787 aa13.02□□□□□ -0.33
YBX3-213ENST00000542641 CSPP1Q1MSJ5 1256 aa13.02□□□□□ -0.33
YBX3-213ENST00000542641 FAM160B1Q5W0V3 765 aa13.02□□□□□ -0.33
YBX3-213ENST00000542641 CCSAPQ6IQ19 270 aaPredicted RBP13.02□□□□□ -0.33
YBX3-213ENST00000542641 CCDC60Q8IWA6 550 aaPredicted RBP13.02□□□□□ -0.33
YBX3-213ENST00000542641 SP7Q8TDD2 431 aaPredicted RBP13.02□□□□□ -0.33
YBX3-213ENST00000542641 TSEN34Q9BSV6 310 aaKnown RBP13.02□□□□□ -0.33
YBX3-213ENST00000542641 SMARCAD1Q9H4L7 1026 aa13.02□□□□□ -0.33
YBX3-213ENST00000542641 ZNF302Q9NR11 478 aa13.02□□□□□ -0.33
YBX3-213ENST00000542641 GABBR1Q9UBS5 961 aa13.02□□□□□ -0.33
YBX3-213ENST00000542641 PCDHA7Q9UN72 937 aa13.02□□□□□ -0.33
YBX3-213ENST00000542641 PP2D1A8MPX8 630 aa13.01□□□□□ -0.33
YBX3-213ENST00000542641 H3BRB1 525 aa13.01□□□□□ -0.33
YBX3-213ENST00000542641 LGR5O75473 907 aa13.01□□□□□ -0.33
YBX3-213ENST00000542641 P4HBP07237 508 aaKnown RBP13.01□□□□□ -0.33
YBX3-213ENST00000542641 ASGR1P07306 291 aa13.01□□□□□ -0.33
YBX3-213ENST00000542641 ZNF286BP0CG31 522 aa13.01□□□□□ -0.33
YBX3-213ENST00000542641 CAPN2P17655 700 aa13.01□□□□□ -0.33
YBX3-213ENST00000542641 UBA7P41226 1012 aa13.01□□□□□ -0.33
YBX3-213ENST00000542641 ACLYP53396 1101 aa13.01□□□□□ -0.33
YBX3-213ENST00000542641 PURAQ00577 322 aaKnown RBP13.01□□□□□ -0.33
YBX3-213ENST00000542641 CYP4A11Q02928 519 aa13.01□□□□□ -0.33
YBX3-213ENST00000542641 SPECC1Q5M775 1068 aa13.01□□□□□ -0.33
YBX3-213ENST00000542641 KRT79Q5XKE5 535 aa13.01□□□□□ -0.33
YBX3-213ENST00000542641 HAUS3Q68CZ6 603 aa13.01□□□□□ -0.33
YBX3-213ENST00000542641 PDXDC2PQ6P474 469 aa13.01□□□□□ -0.33
YBX3-213ENST00000542641 CXCL17Q6UXB2 119 aa13.01□□□□□ -0.33
YBX3-213ENST00000542641 PLPPR4Q7Z2D5 763 aa13.01□□□□□ -0.33
YBX3-213ENST00000542641 TRIM50Q86XT4 487 aa13.01□□□□□ -0.33
YBX3-213ENST00000542641 TPH2Q8IWU9 490 aa13.01□□□□□ -0.33
YBX3-213ENST00000542641 CKAP2LQ8IYA6 745 aa13.01□□□□□ -0.33
YBX3-213ENST00000542641 BANK1Q8NDB2 785 aa13.01□□□□□ -0.33
YBX3-213ENST00000542641 NEK9Q8TD19 979 aa13.01□□□□□ -0.33
YBX3-213ENST00000542641 ATP6V0A1Q93050 837 aa13.01□□□□□ -0.33
YBX3-213ENST00000542641 ABHD8Q96I13 439 aa13.01□□□□□ -0.33
YBX3-213ENST00000542641 DYDC2Q96IM9 177 aa13.01□□□□□ -0.33
YBX3-213ENST00000542641 GBP4Q96PP9 640 aa13.01□□□□□ -0.33
YBX3-213ENST00000542641 PCYT2Q99447 389 aa13.01□□□□□ -0.33
YBX3-213ENST00000542641 HSD17B14Q9BPX1 270 aa13.01□□□□□ -0.33
YBX3-213ENST00000542641 C16orf70Q9BSU1 422 aa13.01□□□□□ -0.33
YBX3-213ENST00000542641 MTG1Q9BT17 334 aaPredicted RBP13.01□□□□□ -0.33
YBX3-213ENST00000542641 TUT1Q9H6E5 874 aaKnown RBP13.01□□□□□ -0.33
YBX3-213ENST00000542641 RGL1Q9NZL6 768 aa13.01□□□□□ -0.33
YBX3-213ENST00000542641 ZNF215Q9UL58 517 aaPredicted RBP13.01□□□□□ -0.33
YBX3-213ENST00000542641 EMSYQ7Z589 1322 aa13.01□□□□□ -0.33
YBX3-213ENST00000542641 BRCA2P51587 3418 aa13□□□□□ -0.33
YBX3-213ENST00000542641 MYH15Q9Y2K3 1946 aa13□□□□□ -0.33
YBX3-213ENST00000542641 GOLGA6L4A6NEF3 574 aa13□□□□□ -0.33
YBX3-213ENST00000542641 MOXD2PA6NHM9 499 aa13□□□□□ -0.33
YBX3-213ENST00000542641 MAP3K13O43283 966 aa13□□□□□ -0.33
YBX3-213ENST00000542641 DKC1O60832 514 aaKnown RBP eCLIP13□□□□□ -0.33
YBX3-213ENST00000542641 SLITRK3O94933 977 aa13□□□□□ -0.33
YBX3-213ENST00000542641 MARK3P27448 753 aa13□□□□□ -0.33
YBX3-213ENST00000542641 TXLNAP40222 546 aa13□□□□□ -0.33
YBX3-213ENST00000542641 CCT6AP40227 531 aaKnown RBP13□□□□□ -0.33
YBX3-213ENST00000542641 QARSP47897 775 aaKnown RBP13□□□□□ -0.33
YBX3-213ENST00000542641 SLC26A2P50443 739 aa13□□□□□ -0.33
YBX3-213ENST00000542641 CHMP4BP1P59074 171 aa13□□□□□ -0.33
YBX3-213ENST00000542641 PSMC5P62195 406 aa13□□□□□ -0.33
YBX3-213ENST00000542641 CTTNQ14247 550 aaKnown RBP13□□□□□ -0.33
YBX3-213ENST00000542641 ZRSR1Q15695 479 aaKnown RBP13□□□□□ -0.33
YBX3-213ENST00000542641 TPRNQ4KMQ1 711 aa13□□□□□ -0.33
YBX3-213ENST00000542641 AXDND1Q5T1B0 1012 aaPredicted RBP13□□□□□ -0.33
YBX3-213ENST00000542641 CLEC17AQ6ZS10 378 aa13□□□□□ -0.33
YBX3-213ENST00000542641 CATSPER3Q86XQ3 398 aa13□□□□□ -0.33
YBX3-213ENST00000542641 TNS4Q8IZW8 715 aa13□□□□□ -0.33
YBX3-213ENST00000542641 ANKLE1Q8NAG6 615 aa13□□□□□ -0.33
YBX3-213ENST00000542641 AFAP1L1Q8TED9 768 aa13□□□□□ -0.33
YBX3-213ENST00000542641 SNX29Q8TEQ0 813 aa13□□□□□ -0.33
YBX3-213ENST00000542641 VTI1AQ96AJ9 217 aa13□□□□□ -0.33
YBX3-213ENST00000542641 EPSTI1Q96J88 318 aa13□□□□□ -0.33
YBX3-213ENST00000542641 LXNQ9BS40 222 aa13□□□□□ -0.33
YBX3-213ENST00000542641 POLR3CQ9BUI4 534 aaPredicted RBP13□□□□□ -0.33
YBX3-213ENST00000542641 ZSWIM4Q9H7M6 989 aa13□□□□□ -0.33
YBX3-213ENST00000542641 TUFT1Q9NNX1 390 aa13□□□□□ -0.33
YBX3-213ENST00000542641 ERAP1Q9NZ08 941 aa13□□□□□ -0.33
YBX3-213ENST00000542641 MAFBQ9Y5Q3 323 aaPredicted RBP13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms