RNA–Protein interactions for RNA: ENST00000517239.1

RNU4-60P-201, Transcript of RNA, U4 small nuclear 60, pseudogene, humanhuman

BASIC

Gene RNU4-60P, Length 135 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-60P-201ENST00000517239 TMEM98Q9Y2Y6 226 aa4.59□□□□□ -1.67
RNU4-60P-201ENST00000517239 CEP83Q9Y592 693 aa4.59□□□□□ -1.67
RNU4-60P-201ENST00000517239 SNX5Q9Y5X3 404 aa4.59□□□□□ -1.67
RNU4-60P-201ENST00000517239 GPR45Q9Y5Y3 372 aa4.59□□□□□ -1.67
RNU4-60P-201ENST00000517239 FSD2A1L4K1 749 aa4.58□□□□□ -1.68
RNU4-60P-201ENST00000517239 CCDC66A2RUB6 948 aa4.58□□□□□ -1.68
RNU4-60P-201ENST00000517239 POM121BA6NF01 834 aa4.58□□□□□ -1.68
RNU4-60P-201ENST00000517239 TISP43B9A030 160 aa4.58□□□□□ -1.68
RNU4-60P-201ENST00000517239 B9A039 149 aa4.58□□□□□ -1.68
RNU4-60P-201ENST00000517239 H7C1D1 291 aa4.58□□□□□ -1.68
RNU4-60P-201ENST00000517239 DDX3XO00571 662 aaKnown RBP eCLIP4.58□□□□□ -1.68
RNU4-60P-201ENST00000517239 SHOXO15266 292 aa4.58□□□□□ -1.68
RNU4-60P-201ENST00000517239 DDX58O95786 925 aaKnown RBP4.58□□□□□ -1.68
RNU4-60P-201ENST00000517239 TBX18O95935 607 aa4.58□□□□□ -1.68
RNU4-60P-201ENST00000517239 MYF5P13349 255 aa4.58□□□□□ -1.68
RNU4-60P-201ENST00000517239 CPB1P15086 417 aa4.58□□□□□ -1.68
RNU4-60P-201ENST00000517239 XBP1P17861 261 aa4.58□□□□□ -1.68
RNU4-60P-201ENST00000517239 XPAP23025 273 aaPredicted RBP4.58□□□□□ -1.68
RNU4-60P-201ENST00000517239 TUBP50607 506 aa4.58□□□□□ -1.68
RNU4-60P-201ENST00000517239 CLNS1AP54105 237 aaKnown RBP4.58□□□□□ -1.68
RNU4-60P-201ENST00000517239 NAP1L1P55209 391 aaKnown RBP4.58□□□□□ -1.68
RNU4-60P-201ENST00000517239 AMPD2Q01433 879 aa4.58□□□□□ -1.68
RNU4-60P-201ENST00000517239 ZNF543Q08ER8 600 aa4.58□□□□□ -1.68
RNU4-60P-201ENST00000517239 FOXC1Q12948 553 aa4.58□□□□□ -1.68
RNU4-60P-201ENST00000517239 SLC14A2Q15849 920 aa4.58□□□□□ -1.68
RNU4-60P-201ENST00000517239 CREB3L3Q68CJ9 461 aa4.58□□□□□ -1.68
RNU4-60P-201ENST00000517239 HIBCHQ6NVY1 386 aaPredicted RBP4.58□□□□□ -1.68
RNU4-60P-201ENST00000517239 RFX8Q6ZV50 586 aa4.58□□□□□ -1.68
RNU4-60P-201ENST00000517239 ENOSF1Q7L5Y1 443 aa4.58□□□□□ -1.68
RNU4-60P-201ENST00000517239 DAAM2Q86T65 1068 aa4.58□□□□□ -1.68
RNU4-60P-201ENST00000517239 TMTC1Q8IUR5 882 aa4.58□□□□□ -1.68
RNU4-60P-201ENST00000517239 HID1Q8IV36 788 aa4.58□□□□□ -1.68
RNU4-60P-201ENST00000517239 LIX1LQ8IVB5 337 aa4.58□□□□□ -1.68
RNU4-60P-201ENST00000517239 PPIL6Q8IXY8 311 aa4.58□□□□□ -1.68
RNU4-60P-201ENST00000517239 PRR18Q8N4B5 295 aa4.58□□□□□ -1.68
RNU4-60P-201ENST00000517239 ATG16L2Q8NAA4 619 aa4.58□□□□□ -1.68
RNU4-60P-201ENST00000517239 FLCNQ8NFG4 579 aa4.58□□□□□ -1.68
RNU4-60P-201ENST00000517239 ASB12Q8WXK4 309 aa4.58□□□□□ -1.68
RNU4-60P-201ENST00000517239 TRIM11Q96F44 468 aa4.58□□□□□ -1.68
RNU4-60P-201ENST00000517239 VMP1Q96GC9 406 aa4.58□□□□□ -1.68
RNU4-60P-201ENST00000517239 RMDN3Q96TC7 470 aa4.58□□□□□ -1.68
RNU4-60P-201ENST00000517239 CGRRF1Q99675 332 aa4.58□□□□□ -1.68
RNU4-60P-201ENST00000517239 ZFYVE21Q9BQ24 234 aa4.58□□□□□ -1.68
RNU4-60P-201ENST00000517239 ALG1Q9BT22 464 aa4.58□□□□□ -1.68
RNU4-60P-201ENST00000517239 FAM167BQ9BTA0 163 aa4.58□□□□□ -1.68
RNU4-60P-201ENST00000517239 TMEM120AQ9BXJ8 343 aa4.58□□□□□ -1.68
RNU4-60P-201ENST00000517239 MBIPQ9NS73 344 aa4.58□□□□□ -1.68
RNU4-60P-201ENST00000517239 CATSPERZQ9NTU4 200 aa4.58□□□□□ -1.68
RNU4-60P-201ENST00000517239 DNAJB12Q9NXW2 375 aaKnown RBP4.58□□□□□ -1.68
RNU4-60P-201ENST00000517239 LRFN1Q9P244 771 aa4.58□□□□□ -1.68
RNU4-60P-201ENST00000517239 AASSQ9UDR5 926 aa4.58□□□□□ -1.68
RNU4-60P-201ENST00000517239 SRPK3Q9UPE1 567 aa4.58□□□□□ -1.68
RNU4-60P-201ENST00000517239 J3QL48 77 aa4.57□□□□□ -1.68
RNU4-60P-201ENST00000517239 GSTA4O15217 222 aa4.57□□□□□ -1.68
RNU4-60P-201ENST00000517239 IRAK2O43187 625 aa4.57□□□□□ -1.68
RNU4-60P-201ENST00000517239 ST18O60284 1047 aa4.57□□□□□ -1.68
RNU4-60P-201ENST00000517239 MSCO60682 206 aa4.57□□□□□ -1.68
RNU4-60P-201ENST00000517239 SKAP2O75563 359 aaPredicted RBP4.57□□□□□ -1.68
RNU4-60P-201ENST00000517239 ARIH2O95376 493 aa4.57□□□□□ -1.68
RNU4-60P-201ENST00000517239 SLFN14P0C7P3 912 aa4.57□□□□□ -1.68
RNU4-60P-201ENST00000517239 CKMT1AP12532 417 aa4.57□□□□□ -1.68
RNU4-60P-201ENST00000517239 BMP2P12643 396 aa4.57□□□□□ -1.68
RNU4-60P-201ENST00000517239 YBX3P16989 372 aaKnown RBP eCLIP4.57□□□□□ -1.68
RNU4-60P-201ENST00000517239 EPHA1P21709 976 aa4.57□□□□□ -1.68
RNU4-60P-201ENST00000517239 PDIA3P30101 505 aaKnown RBP4.57□□□□□ -1.68
RNU4-60P-201ENST00000517239 HOXC13P31276 330 aa4.57□□□□□ -1.68
RNU4-60P-201ENST00000517239 ATXN1P54253 815 aaKnown RBP4.57□□□□□ -1.68
RNU4-60P-201ENST00000517239 SNX16P57768 344 aa4.57□□□□□ -1.68
RNU4-60P-201ENST00000517239 SMAD3P84022 425 aaKnown RBP4.57□□□□□ -1.68
RNU4-60P-201ENST00000517239 HNRNPUQ00839 825 aaKnown RBP eCLIP4.57□□□□□ -1.68
RNU4-60P-201ENST00000517239 CYP4F3Q08477 520 aa4.57□□□□□ -1.68
RNU4-60P-201ENST00000517239 SCRN1Q12765 414 aa4.57□□□□□ -1.68
RNU4-60P-201ENST00000517239 NEUROD1Q13562 356 aa4.57□□□□□ -1.68
RNU4-60P-201ENST00000517239 POLD3Q15054 466 aaPredicted RBP4.57□□□□□ -1.68
RNU4-60P-201ENST00000517239 ZNF174Q15697 407 aa4.57□□□□□ -1.68
RNU4-60P-201ENST00000517239 SMAD2Q15796 467 aaKnown RBP4.57□□□□□ -1.68
RNU4-60P-201ENST00000517239 ZC3H12AQ5D1E8 599 aaKnown RBP4.57□□□□□ -1.68
RNU4-60P-201ENST00000517239 RILPL1Q5EBL4 403 aa4.57□□□□□ -1.68
RNU4-60P-201ENST00000517239 NBPF12Q5TAG4 269 aaPredicted RBP4.57□□□□□ -1.68
RNU4-60P-201ENST00000517239 RSPO2Q6UXX9 243 aaPredicted RBP4.57□□□□□ -1.68
RNU4-60P-201ENST00000517239 DSTYKQ6XUX3 929 aa4.57□□□□□ -1.68
RNU4-60P-201ENST00000517239 FRMD7Q6ZUT3 714 aa4.57□□□□□ -1.68
RNU4-60P-201ENST00000517239 NEK10Q6ZWH5 1172 aa4.57□□□□□ -1.68
RNU4-60P-201ENST00000517239 FAM35AQ86V20 835 aa4.57□□□□□ -1.68
RNU4-60P-201ENST00000517239 PHF6Q8IWS0 365 aaKnown RBP eCLIP4.57□□□□□ -1.68
RNU4-60P-201ENST00000517239 MRPL41Q8IXM3 137 aaKnown RBP4.57□□□□□ -1.68
RNU4-60P-201ENST00000517239 TEX11Q8IYF3 940 aa4.57□□□□□ -1.68
RNU4-60P-201ENST00000517239 CACNA2D3Q8IZS8 1091 aa4.57□□□□□ -1.68
RNU4-60P-201ENST00000517239 LINC00528Q8N1L1 170 aa4.57□□□□□ -1.68
RNU4-60P-201ENST00000517239 FIBCD1Q8N539 461 aa4.57□□□□□ -1.68
RNU4-60P-201ENST00000517239 CCDC33Q8N5R6 958 aa4.57□□□□□ -1.68
RNU4-60P-201ENST00000517239 ZNF610Q8N9Z0 462 aa4.57□□□□□ -1.68
RNU4-60P-201ENST00000517239 SNIP1Q8TAD8 396 aaKnown RBP4.57□□□□□ -1.68
RNU4-60P-201ENST00000517239 PUM2Q8TB72 1066 aaKnown RBP eCLIP4.57□□□□□ -1.68
RNU4-60P-201ENST00000517239 ADAMTS18Q8TE60 1221 aa4.57□□□□□ -1.68
RNU4-60P-201ENST00000517239 RIN2Q8WYP3 895 aaPredicted RBP4.57□□□□□ -1.68
RNU4-60P-201ENST00000517239 CENPIQ92674 756 aaPredicted RBP4.57□□□□□ -1.68
RNU4-60P-201ENST00000517239 FBXW5Q969U6 566 aa4.57□□□□□ -1.68
RNU4-60P-201ENST00000517239 COA7Q96BR5 231 aa4.57□□□□□ -1.68
RNU4-60P-201ENST00000517239 CCDC34Q96HJ3 373 aa4.57□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 263.9 ms