RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 EPC1Q9H2F5 836 aa14.29□□□□□ -0.12
USP40-208ENST00000450966 SYBUQ9NX95 663 aa14.29□□□□□ -0.12
USP40-208ENST00000450966 AGTPBP1Q9UPW5 1226 aa14.29□□□□□ -0.12
USP40-208ENST00000450966 SNX5Q9Y5X3 404 aa14.29□□□□□ -0.12
USP40-208ENST00000450966 MAD1L1Q9Y6D9 718 aa14.29□□□□□ -0.12
USP40-208ENST00000450966 CCDC188H7C350 402 aa14.29□□□□□ -0.12
USP40-208ENST00000450966 SLC7A5Q01650 507 aa14.29□□□□□ -0.12
USP40-208ENST00000450966 TFAP4Q01664 338 aa14.29□□□□□ -0.12
USP40-208ENST00000450966 ITGB3BPQ13352 177 aaPredicted RBP14.29□□□□□ -0.12
USP40-208ENST00000450966 LIN9Q5TKA1 542 aa14.29□□□□□ -0.12
USP40-208ENST00000450966 CCDC17Q96LX7 622 aa14.29□□□□□ -0.12
USP40-208ENST00000450966 USP28Q96RU2 1077 aa14.29□□□□□ -0.12
USP40-208ENST00000450966 ZBED2Q9BTP6 218 aa14.29□□□□□ -0.12
USP40-208ENST00000450966 PER1O15534 1290 aaPredicted RBP14.29□□□□□ -0.12
USP40-208ENST00000450966 NDUFA10O95299 355 aa14.29□□□□□ -0.12
USP40-208ENST00000450966 LETM2Q2VYF4 491 aa14.29□□□□□ -0.12
USP40-208ENST00000450966 TRPM8Q7Z2W7 1104 aa14.29□□□□□ -0.12
USP40-208ENST00000450966 ATP11CQ8NB49 1132 aa14.29□□□□□ -0.12
USP40-208ENST00000450966 KLHL25Q9H0H3 589 aa14.29□□□□□ -0.12
USP40-208ENST00000450966 FAM207AQ9NSI2 230 aaPredicted RBP14.29□□□□□ -0.12
USP40-208ENST00000450966 SAP30BPQ9UHR5 308 aaKnown RBP14.29□□□□□ -0.12
USP40-208ENST00000450966 SYCE1LA8MT33 242 aa14.28□□□□□ -0.12
USP40-208ENST00000450966 GSTA1P08263 222 aa14.28□□□□□ -0.12
USP40-208ENST00000450966 SERPINB8P50452 374 aa14.28□□□□□ -0.12
USP40-208ENST00000450966 GTF2IP78347 998 aa14.28□□□□□ -0.12
USP40-208ENST00000450966 NR1H3Q13133 447 aa14.28□□□□□ -0.12
USP40-208ENST00000450966 ARHGAP44Q17R89 818 aa14.28□□□□□ -0.12
USP40-208ENST00000450966 DPCR1Q3MIW9 517 aa14.28□□□□□ -0.12
USP40-208ENST00000450966 KRT25Q7Z3Z0 450 aa14.28□□□□□ -0.12
USP40-208ENST00000450966 PODNQ7Z5L7 613 aa14.28□□□□□ -0.12
USP40-208ENST00000450966 CALML6Q8TD86 181 aa14.28□□□□□ -0.12
USP40-208ENST00000450966 TMEM165Q9HC07 324 aa14.28□□□□□ -0.12
USP40-208ENST00000450966 CCPG1Q9ULG6 757 aa14.28□□□□□ -0.12
USP40-208ENST00000450966 ZMYND8Q9ULU4 1186 aaPredicted RBP14.28□□□□□ -0.12
USP40-208ENST00000450966 JAG2Q9Y219 1238 aa14.28□□□□□ -0.12
USP40-208ENST00000450966 MYO3BQ8WXR4 1341 aa14.28□□□□□ -0.12
USP40-208ENST00000450966 P4HA2O15460 535 aa14.28□□□□□ -0.12
USP40-208ENST00000450966 EIF2S1P05198 315 aaKnown RBP14.28□□□□□ -0.12
USP40-208ENST00000450966 PLTPP55058 493 aa14.28□□□□□ -0.12
USP40-208ENST00000450966 KRT81Q14533 505 aa14.28□□□□□ -0.12
USP40-208ENST00000450966 KBTBD3Q8NAB2 608 aa14.28□□□□□ -0.12
USP40-208ENST00000450966 ZKSCAN4Q969J2 545 aaPredicted RBP14.28□□□□□ -0.12
USP40-208ENST00000450966 FAM161BQ96MY7 647 aa14.28□□□□□ -0.12
USP40-208ENST00000450966 TAF1DQ9H5J8 278 aaPredicted RBP14.28□□□□□ -0.12
USP40-208ENST00000450966 GPCPD1Q9NPB8 672 aa14.28□□□□□ -0.12
USP40-208ENST00000450966 TBKBP1A7MCY6 615 aa14.28□□□□□ -0.12
USP40-208ENST00000450966 LSM1O15116 133 aaKnown RBP14.28□□□□□ -0.12
USP40-208ENST00000450966 MAP4P27816 1152 aaKnown RBP14.28□□□□□ -0.12
USP40-208ENST00000450966 ME3Q16798 604 aa14.28□□□□□ -0.12
USP40-208ENST00000450966 CCDC144BQ3MJ40 725 aa14.28□□□□□ -0.12
USP40-208ENST00000450966 KAZNQ674X7 775 aa14.28□□□□□ -0.12
USP40-208ENST00000450966 LRIG3Q6UXM1 1119 aa14.28□□□□□ -0.12
USP40-208ENST00000450966 TSPYL6Q8N831 410 aa14.28□□□□□ -0.12
USP40-208ENST00000450966 SERTAD1Q9UHV2 236 aa14.28□□□□□ -0.12
USP40-208ENST00000450966 C15orf41Q9Y2V0 281 aa14.28□□□□□ -0.12
USP40-208ENST00000450966 CAB39Q9Y376 341 aaPredicted RBP14.28□□□□□ -0.12
USP40-208ENST00000450966 GNA14O95837 355 aa14.28□□□□□ -0.12
USP40-208ENST00000450966 TSPY1Q01534 308 aa14.28□□□□□ -0.12
USP40-208ENST00000450966 DCAF17Q5H9S7 520 aaPredicted RBP14.28□□□□□ -0.12
USP40-208ENST00000450966 CHAMP1Q96JM3 812 aa14.28□□□□□ -0.12
USP40-208ENST00000450966 PCDHA7Q9UN72 937 aa14.28□□□□□ -0.12
USP40-208ENST00000450966 ADGRB3O60242 1522 aa14.28□□□□□ -0.12
USP40-208ENST00000450966 USP19O94966 1318 aa14.28□□□□□ -0.12
USP40-208ENST00000450966 LCA5LO95447 670 aa14.28□□□□□ -0.12
USP40-208ENST00000450966 MRPL28Q13084 256 aaKnown RBP14.28□□□□□ -0.12
USP40-208ENST00000450966 FLOT2Q14254 428 aa14.28□□□□□ -0.12
USP40-208ENST00000450966 NXNQ6DKJ4 435 aa14.28□□□□□ -0.12
USP40-208ENST00000450966 GABPB2Q8TAK5 448 aaPredicted RBP14.28□□□□□ -0.12
USP40-208ENST00000450966 RIOK1Q9BRS2 568 aaKnown RBP14.28□□□□□ -0.12
USP40-208ENST00000450966 RAD21L1Q9H4I0 556 aa14.28□□□□□ -0.12
USP40-208ENST00000450966 MRPL40Q9NQ50 206 aaKnown RBP14.28□□□□□ -0.12
USP40-208ENST00000450966 PIM2Q9P1W9 311 aa14.28□□□□□ -0.12
USP40-208ENST00000450966 TEKT2Q9UIF3 430 aa14.28□□□□□ -0.12
USP40-208ENST00000450966 TMA7Q9Y2S6 64 aaKnown RBP14.28□□□□□ -0.12
USP40-208ENST00000450966 GOLGA8IPA6NC78 632 aa14.27□□□□□ -0.12
USP40-208ENST00000450966 CIAO1O76071 339 aa14.27□□□□□ -0.12
USP40-208ENST00000450966 DDIT3P35638 169 aa14.27□□□□□ -0.12
USP40-208ENST00000450966 EIF2B2P49770 351 aaKnown RBP14.27□□□□□ -0.12
USP40-208ENST00000450966 DEFA1P59665 94 aa14.27□□□□□ -0.12
USP40-208ENST00000450966 DEFA3P59666 94 aa14.27□□□□□ -0.12
USP40-208ENST00000450966 PTGISQ16647 500 aa14.27□□□□□ -0.12
USP40-208ENST00000450966 ABCA9Q8IUA7 1624 aa14.27□□□□□ -0.12
USP40-208ENST00000450966 HDLBPQ00341 1268 aaKnown RBP14.27□□□□□ -0.12
USP40-208ENST00000450966 KIRREL3Q8IZU9 778 aa14.27□□□□□ -0.12
USP40-208ENST00000450966 TTLL6Q8N841 843 aa14.27□□□□□ -0.12
USP40-208ENST00000450966 TRIM15Q9C019 465 aa14.27□□□□□ -0.12
USP40-208ENST00000450966 GPR108Q9NPR9 543 aa14.27□□□□□ -0.12
USP40-208ENST00000450966 DYNC1LI1Q9Y6G9 523 aaKnown RBP14.27□□□□□ -0.12
USP40-208ENST00000450966 WBP4O75554 376 aaKnown RBP14.27□□□□□ -0.13
USP40-208ENST00000450966 ADARP55265 1226 aaKnown RBP14.27□□□□□ -0.13
USP40-208ENST00000450966 KIF23Q02241 960 aaPredicted RBP14.27□□□□□ -0.13
USP40-208ENST00000450966 CROCCP3Q8IVE0 287 aa14.27□□□□□ -0.13
USP40-208ENST00000450966 MSL3Q8N5Y2 521 aaKnown RBP14.27□□□□□ -0.13
USP40-208ENST00000450966 FAM81BQ96LP2 452 aa14.27□□□□□ -0.13
USP40-208ENST00000450966 BPIFA3Q9BQP9 254 aa14.27□□□□□ -0.13
USP40-208ENST00000450966 MAPK8IP1Q9UQF2 711 aa14.27□□□□□ -0.13
USP40-208ENST00000450966 R3HDM2Q9Y2K5 976 aaKnown RBP14.27□□□□□ -0.13
USP40-208ENST00000450966 SPATA31E1Q6ZUB1 1445 aa14.27□□□□□ -0.13
USP40-208ENST00000450966 RPS6KA4O75676 772 aa14.27□□□□□ -0.13
USP40-208ENST00000450966 NDUFA8P51970 172 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms