RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 NEK3P51956 506 aa5.09□□□□□ -1.59
HMGB1-204ENST00000399489 GRB10Q13322 594 aa5.09□□□□□ -1.59
HMGB1-204ENST00000399489 PICALMQ13492 652 aa5.09□□□□□ -1.59
HMGB1-204ENST00000399489 SPATS1Q496A3 300 aa5.09□□□□□ -1.59
HMGB1-204ENST00000399489 L1TD1Q5T7N2 865 aaKnown RBP5.09□□□□□ -1.59
HMGB1-204ENST00000399489 ICE2Q659A1 982 aa5.09□□□□□ -1.59
HMGB1-204ENST00000399489 LHFPL2Q6ZUX7 228 aa5.09□□□□□ -1.59
HMGB1-204ENST00000399489 LRRTM3Q86VH5 581 aa5.09□□□□□ -1.59
HMGB1-204ENST00000399489 PASD1Q8IV76 773 aa5.09□□□□□ -1.59
HMGB1-204ENST00000399489 ENAHQ8N8S7 591 aaPredicted RBP5.09□□□□□ -1.59
HMGB1-204ENST00000399489 NETO2Q8NC67 525 aa5.09□□□□□ -1.59
HMGB1-204ENST00000399489 TIFAQ96CG3 184 aa5.09□□□□□ -1.59
HMGB1-204ENST00000399489 TSPAN17Q96FV3 270 aa5.09□□□□□ -1.59
HMGB1-204ENST00000399489 NEUROD6Q96NK8 337 aa5.09□□□□□ -1.59
HMGB1-204ENST00000399489 YIPF4Q9BSR8 244 aa5.09□□□□□ -1.59
HMGB1-204ENST00000399489 SARGQ9BW04 601 aa5.09□□□□□ -1.59
HMGB1-204ENST00000399489 CCDC8Q9H0W5 538 aaPredicted RBP5.09□□□□□ -1.59
HMGB1-204ENST00000399489 NGRNQ9NPE2 291 aaKnown RBP5.09□□□□□ -1.59
HMGB1-204ENST00000399489 SLC5A4Q9NY91 659 aa5.09□□□□□ -1.59
HMGB1-204ENST00000399489 STXBP3O00186 592 aa5.09□□□□□ -1.6
HMGB1-204ENST00000399489 FFAR3O14843 346 aa5.09□□□□□ -1.6
HMGB1-204ENST00000399489 DPY19L1Q2PZI1 675 aa5.09□□□□□ -1.6
HMGB1-204ENST00000399489 ALFQ53S48 1182 aa5.09□□□□□ -1.6
HMGB1-204ENST00000399489 ZC3H12BQ5HYM0 836 aaKnown RBP5.09□□□□□ -1.6
HMGB1-204ENST00000399489 UBXN11Q5T124 520 aa5.09□□□□□ -1.6
HMGB1-204ENST00000399489 ANO1Q5XXA6 986 aa5.09□□□□□ -1.6
HMGB1-204ENST00000399489 LIPIQ6XZB0 460 aa5.09□□□□□ -1.6
HMGB1-204ENST00000399489 B3GNT8Q7Z7M8 397 aa5.09□□□□□ -1.6
HMGB1-204ENST00000399489 MORC1Q86VD1 984 aa5.09□□□□□ -1.6
HMGB1-204ENST00000399489 FAM178BQ8IXR5 827 aa5.09□□□□□ -1.6
HMGB1-204ENST00000399489 DRC7Q8IY82 874 aa5.09□□□□□ -1.6
HMGB1-204ENST00000399489 CPXCR1Q8N123 301 aa5.09□□□□□ -1.6
HMGB1-204ENST00000399489 ZBTB38Q8NAP3 1195 aaPredicted RBP5.09□□□□□ -1.6
HMGB1-204ENST00000399489 TP53I13Q8NBR0 393 aaPredicted RBP5.09□□□□□ -1.6
HMGB1-204ENST00000399489 PJA1Q8NG27 643 aa5.09□□□□□ -1.6
HMGB1-204ENST00000399489 FNIP1Q8TF40 1166 aa5.09□□□□□ -1.6
HMGB1-204ENST00000399489 SPATA9Q9BWV2 254 aa5.09□□□□□ -1.6
HMGB1-204ENST00000399489 KLHL25Q9H0H3 589 aa5.09□□□□□ -1.6
HMGB1-204ENST00000399489 PCDH18Q9HCL0 1135 aa5.09□□□□□ -1.6
HMGB1-204ENST00000399489 USP25Q9UHP3 1055 aa5.09□□□□□ -1.6
HMGB1-204ENST00000399489 LTBP3Q9NS15 1303 aa5.08□□□□□ -1.6
HMGB1-204ENST00000399489 NPHP3-ACAD11A0A0J9YXS1 232 aa5.08□□□□□ -1.6
HMGB1-204ENST00000399489 C2orf71A6NGG8 1288 aa5.08□□□□□ -1.6
HMGB1-204ENST00000399489 RASSF10A6NK89 507 aa5.08□□□□□ -1.6
HMGB1-204ENST00000399489 GPR39O43194 453 aa5.08□□□□□ -1.6
HMGB1-204ENST00000399489 CBFA2T2O43439 604 aa5.08□□□□□ -1.6
HMGB1-204ENST00000399489 ASGR2P07307 311 aa5.08□□□□□ -1.6
HMGB1-204ENST00000399489 ADRB1P08588 477 aa5.08□□□□□ -1.6
HMGB1-204ENST00000399489 NBPF7P0C2Y1 421 aaPredicted RBP5.08□□□□□ -1.6
HMGB1-204ENST00000399489 GLI4P10075 376 aa5.08□□□□□ -1.6
HMGB1-204ENST00000399489 SKOR2Q2VWA4 1001 aaPredicted RBP5.08□□□□□ -1.6
HMGB1-204ENST00000399489 TTLL7Q6ZT98 887 aa5.08□□□□□ -1.6
HMGB1-204ENST00000399489 EEPD1Q7L9B9 569 aa5.08□□□□□ -1.6
HMGB1-204ENST00000399489 SMAP1Q8IYB5 467 aaPredicted RBP5.08□□□□□ -1.6
HMGB1-204ENST00000399489 ANKRD42Q8N9B4 389 aa5.08□□□□□ -1.6
HMGB1-204ENST00000399489 WDR66Q8TBY9 1149 aa5.08□□□□□ -1.6
HMGB1-204ENST00000399489 JPH3Q8WXH2 748 aaPredicted RBP5.08□□□□□ -1.6
HMGB1-204ENST00000399489 FGD4Q96M96 766 aa5.08□□□□□ -1.6
HMGB1-204ENST00000399489 BDH2Q9BUT1 245 aa5.08□□□□□ -1.6
HMGB1-204ENST00000399489 TRIM8Q9BZR9 551 aa5.08□□□□□ -1.6
HMGB1-204ENST00000399489 ADAM7Q9H2U9 754 aa5.08□□□□□ -1.6
HMGB1-204ENST00000399489 PALD1Q9ULE6 856 aa5.08□□□□□ -1.6
HMGB1-204ENST00000399489 RWDD3Q9Y3V2 267 aa5.08□□□□□ -1.6
HMGB1-204ENST00000399489 FAM83GA6ND36 823 aa5.07□□□□□ -1.6
HMGB1-204ENST00000399489 GABRDO14764 452 aa5.07□□□□□ -1.6
HMGB1-204ENST00000399489 PIP5K1CO60331 668 aa5.07□□□□□ -1.6
HMGB1-204ENST00000399489 VAMP4O75379 141 aa5.07□□□□□ -1.6
HMGB1-204ENST00000399489 RNASEH2AO75792 299 aaKnown RBP5.07□□□□□ -1.6
HMGB1-204ENST00000399489 ATF2P15336 505 aa5.07□□□□□ -1.6
HMGB1-204ENST00000399489 FBLN1P23142 703 aa5.07□□□□□ -1.6
HMGB1-204ENST00000399489 CASP2P42575 452 aa5.07□□□□□ -1.6
HMGB1-204ENST00000399489 STRN3Q13033 797 aa5.07□□□□□ -1.6
HMGB1-204ENST00000399489 NT5DC1Q5TFE4 455 aa5.07□□□□□ -1.6
HMGB1-204ENST00000399489 RNF219Q5W0B1 726 aaPredicted RBP5.07□□□□□ -1.6
HMGB1-204ENST00000399489 CXorf57Q6NSI4 855 aaKnown RBP5.07□□□□□ -1.6
HMGB1-204ENST00000399489 POMZP3Q6PJE2 187 aa5.07□□□□□ -1.6
HMGB1-204ENST00000399489 SAPCD2Q86UD0 394 aa5.07□□□□□ -1.6
HMGB1-204ENST00000399489 RCC1LQ96I51 464 aaKnown RBP5.07□□□□□ -1.6
HMGB1-204ENST00000399489 STRBPQ96SI9 672 aaKnown RBP5.07□□□□□ -1.6
HMGB1-204ENST00000399489 PRDM11Q9NQV5 511 aa5.07□□□□□ -1.6
HMGB1-204ENST00000399489 INTS7Q9NVH2 962 aaKnown RBP5.07□□□□□ -1.6
HMGB1-204ENST00000399489 CGGBP1Q9UFW8 167 aaPredicted RBP5.07□□□□□ -1.6
HMGB1-204ENST00000399489 PUF60Q9UHX1 559 aaKnown RBP5.07□□□□□ -1.6
HMGB1-204ENST00000399489 CNOT11Q9UKZ1 510 aaKnown RBP5.07□□□□□ -1.6
HMGB1-204ENST00000399489 GTF2A1LQ9UNN4 478 aa5.07□□□□□ -1.6
HMGB1-204ENST00000399489 HCFC2Q9Y5Z7 792 aa5.07□□□□□ -1.6
HMGB1-204ENST00000399489 A0A1W2PQH9 124 aa5.06□□□□□ -1.6
HMGB1-204ENST00000399489 KLRG2A4D1S0 409 aaPredicted RBP5.06□□□□□ -1.6
HMGB1-204ENST00000399489 SH3D21A4FU49 640 aa5.06□□□□□ -1.6
HMGB1-204ENST00000399489 NOP56O00567 594 aaKnown RBP5.06□□□□□ -1.6
HMGB1-204ENST00000399489 PLD2O14939 933 aa5.06□□□□□ -1.6
HMGB1-204ENST00000399489 ANP32CO43423 234 aa5.06□□□□□ -1.6
HMGB1-204ENST00000399489 EPHX1P07099 455 aa5.06□□□□□ -1.6
HMGB1-204ENST00000399489 ZSCAN20P17040 1043 aaPredicted RBP5.06□□□□□ -1.6
HMGB1-204ENST00000399489 SERPINB3P29508 390 aa5.06□□□□□ -1.6
HMGB1-204ENST00000399489 GJA9P57773 515 aa5.06□□□□□ -1.6
HMGB1-204ENST00000399489 TCIRG1Q13488 830 aa5.06□□□□□ -1.6
HMGB1-204ENST00000399489 CCDC184Q52MB2 194 aa5.06□□□□□ -1.6
HMGB1-204ENST00000399489 FNDC3BQ53EP0 1204 aaKnown RBP5.06□□□□□ -1.6
HMGB1-204ENST00000399489 DDX46Q7L014 1031 aaKnown RBP5.06□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 282.7 ms