RNA–Protein interactions for RNA: ENST00000340477.9

SYNE4-202, Transcript of spectrin repeat containing nuclear envelope family member 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE4, Length 1,004 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4-202ENST00000340477 ZSCAN21Q9Y5A6 473 aaPredicted RBP21.69■■□□□ 1.06
SYNE4-202ENST00000340477 PCDHA10Q9Y5I2 948 aa21.69■■□□□ 1.06
SYNE4-202ENST00000340477 UMODL1Q5DID0 1318 aa21.69■■□□□ 1.06
SYNE4-202ENST00000340477 ATG7O95352 703 aa21.68■■□□□ 1.06
SYNE4-202ENST00000340477 CD2BP2O95400 341 aaKnown RBP21.68■■□□□ 1.06
SYNE4-202ENST00000340477 PFKMP08237 780 aa21.68■■□□□ 1.06
SYNE4-202ENST00000340477 PDXDC2PQ6P474 469 aa21.68■■□□□ 1.06
SYNE4-202ENST00000340477 ABHD15Q6UXT9 468 aa21.68■■□□□ 1.06
SYNE4-202ENST00000340477 FBXO18Q8NFZ0 1043 aa21.68■■□□□ 1.06
SYNE4-202ENST00000340477 RNPC3Q96LT9 517 aaKnown RBP21.68■■□□□ 1.06
SYNE4-202ENST00000340477 WNT8AQ9H1J5 351 aa21.68■■□□□ 1.06
SYNE4-202ENST00000340477 RRN3P2A6NIE6 340 aa21.67■■□□□ 1.06
SYNE4-202ENST00000340477 CHMP2AO43633 222 aa21.67■■□□□ 1.06
SYNE4-202ENST00000340477 BAG4O95429 457 aaKnown RBP21.67■■□□□ 1.06
SYNE4-202ENST00000340477 PARNO95453 639 aaKnown RBP21.67■■□□□ 1.06
SYNE4-202ENST00000340477 SELPP16109 830 aa21.67■■□□□ 1.06
SYNE4-202ENST00000340477 HOXC8P31273 242 aa21.67■■□□□ 1.06
SYNE4-202ENST00000340477 GRIK4Q16099 956 aa21.67■■□□□ 1.06
SYNE4-202ENST00000340477 SERINC5Q86VE9 423 aa21.67■■□□□ 1.06
SYNE4-202ENST00000340477 CKAP2LQ8IYA6 745 aa21.67■■□□□ 1.06
SYNE4-202ENST00000340477 LMBR1Q8WVP7 490 aa21.67■■□□□ 1.06
SYNE4-202ENST00000340477 TNFRSF25Q93038 417 aa21.67■■□□□ 1.06
SYNE4-202ENST00000340477 SCLYQ96I15 445 aa21.67■■□□□ 1.06
SYNE4-202ENST00000340477 SMC3Q9UQE7 1217 aa21.67■■□□□ 1.06
SYNE4-202ENST00000340477 EDIL3O43854 480 aa21.66■■□□□ 1.06
SYNE4-202ENST00000340477 ZNF200P98182 395 aaPredicted RBP21.66■■□□□ 1.06
SYNE4-202ENST00000340477 RBL2Q08999 1139 aa21.66■■□□□ 1.06
SYNE4-202ENST00000340477 SWSAP1Q6NVH7 229 aa21.66■■□□□ 1.06
SYNE4-202ENST00000340477 LRRC8DQ7L1W4 858 aa21.66■■□□□ 1.06
SYNE4-202ENST00000340477 RDM1Q8NG50 284 aa21.66■■□□□ 1.06
SYNE4-202ENST00000340477 FAM20AQ96MK3 541 aa21.66■■□□□ 1.06
SYNE4-202ENST00000340477 PCYT2Q99447 389 aa21.66■■□□□ 1.06
SYNE4-202ENST00000340477 FOXP1Q9H334 677 aaPredicted RBP21.66■■□□□ 1.06
SYNE4-202ENST00000340477 DISC1Q9NRI5 854 aa21.66■■□□□ 1.06
SYNE4-202ENST00000340477 TUBE1Q9UJT0 475 aa21.66■■□□□ 1.06
SYNE4-202ENST00000340477 RANBP2P49792 3224 aaKnown RBP21.65■■□□□ 1.06
SYNE4-202ENST00000340477 IGKV6D-21A0A0A0MT36 114 aa21.65■■□□□ 1.06
SYNE4-202ENST00000340477 POTEB3A0JP26 581 aa21.65■■□□□ 1.06
SYNE4-202ENST00000340477 TBX3O15119 743 aa21.65■■□□□ 1.06
SYNE4-202ENST00000340477 TREHO43280 583 aa21.65■■□□□ 1.06
SYNE4-202ENST00000340477 SLC37A4O43826 429 aa21.65■■□□□ 1.06
SYNE4-202ENST00000340477 CAND2O75155 1236 aa21.65■■□□□ 1.06
SYNE4-202ENST00000340477 RPLP2P05387 115 aaKnown RBP21.65■■□□□ 1.06
SYNE4-202ENST00000340477 IQCF3P0C7M6 154 aa21.65■■□□□ 1.06
SYNE4-202ENST00000340477 CKBP12277 381 aa21.65■■□□□ 1.06
SYNE4-202ENST00000340477 ACTN1P12814 892 aa21.65■■□□□ 1.06
SYNE4-202ENST00000340477 THPOP40225 353 aa21.65■■□□□ 1.06
SYNE4-202ENST00000340477 IGBP1P78318 339 aa21.65■■□□□ 1.06
SYNE4-202ENST00000340477 PLCB4Q15147 1175 aa21.65■■□□□ 1.06
SYNE4-202ENST00000340477 SHHQ15465 462 aa21.65■■□□□ 1.06
SYNE4-202ENST00000340477 LRIT3Q3SXY7 679 aa21.65■■□□□ 1.06
SYNE4-202ENST00000340477 TAF2Q6P1X5 1199 aa21.65■■□□□ 1.06
SYNE4-202ENST00000340477 POTEBQ6S5H4 581 aa21.65■■□□□ 1.06
SYNE4-202ENST00000340477 MIER3Q7Z3K6 550 aa21.65■■□□□ 1.06
SYNE4-202ENST00000340477 RSPH3Q86UC2 560 aa21.65■■□□□ 1.06
SYNE4-202ENST00000340477 CCDC60Q8IWA6 550 aaPredicted RBP21.65■■□□□ 1.06
SYNE4-202ENST00000340477 SLFN12Q8IYM2 578 aa21.65■■□□□ 1.06
SYNE4-202ENST00000340477 ETNPPLQ8TBG4 499 aa21.65■■□□□ 1.06
SYNE4-202ENST00000340477 FAM167AQ96KS9 214 aa21.65■■□□□ 1.06
SYNE4-202ENST00000340477 CTAGE1Q96RT6 745 aa21.65■■□□□ 1.06
SYNE4-202ENST00000340477 WDR81Q562E7 1941 aa21.65■■□□□ 1.06
SYNE4-202ENST00000340477 SCN5AQ14524 2016 aa21.64■■□□□ 1.05
SYNE4-202ENST00000340477 FAM205CA6NFA0 338 aa21.64■■□□□ 1.05
SYNE4-202ENST00000340477 H3BQV1 296 aa21.64■■□□□ 1.05
SYNE4-202ENST00000340477 PSMD10O75832 226 aa21.64■■□□□ 1.05
SYNE4-202ENST00000340477 ACRP10323 421 aa21.64■■□□□ 1.05
SYNE4-202ENST00000340477 GJB2P29033 226 aa21.64■■□□□ 1.05
SYNE4-202ENST00000340477 EPHB4P54760 987 aa21.64■■□□□ 1.05
SYNE4-202ENST00000340477 EARS2Q5JPH6 523 aaKnown RBP21.64■■□□□ 1.05
SYNE4-202ENST00000340477 C9orf50Q5SZB4 431 aa21.64■■□□□ 1.05
SYNE4-202ENST00000340477 DEFB128Q7Z7B8 93 aa21.64■■□□□ 1.05
SYNE4-202ENST00000340477 ATP8B4Q8TF62 1192 aa21.64■■□□□ 1.05
SYNE4-202ENST00000340477 DHX38Q92620 1227 aaKnown RBP21.64■■□□□ 1.05
SYNE4-202ENST00000340477 BUD13Q9BRD0 619 aaKnown RBP eCLIP21.64■■□□□ 1.057e-6■□□□□ 9.4
SYNE4-202ENST00000340477 FTOQ9C0B1 505 aaKnown RBP eCLIP21.64■■□□□ 1.05
SYNE4-202ENST00000340477 UNC45AQ9H3U1 944 aa21.64■■□□□ 1.05
SYNE4-202ENST00000340477 GABBR1Q9UBS5 961 aa21.64■■□□□ 1.05
SYNE4-202ENST00000340477 NOL7Q9UMY1 257 aaKnown RBP21.64■■□□□ 1.05
SYNE4-202ENST00000340477 COL1A2P08123 1366 aa21.63■■□□□ 1.05
SYNE4-202ENST00000340477 HBP1O60381 514 aa21.63■■□□□ 1.05
SYNE4-202ENST00000340477 FGBP02675 491 aa21.63■■□□□ 1.05
SYNE4-202ENST00000340477 INSRRP14616 1297 aa21.63■■□□□ 1.05
SYNE4-202ENST00000340477 HIC1Q14526 733 aa21.63■■□□□ 1.05
SYNE4-202ENST00000340477 POTEDQ86YR6 584 aa21.63■■□□□ 1.05
SYNE4-202ENST00000340477 KCNMB3Q9NPA1 279 aa21.63■■□□□ 1.05
SYNE4-202ENST00000340477 IGSF9BQ9UPX0 1349 aa21.62■■□□□ 1.05
SYNE4-202ENST00000340477 NEMFO60524 1076 aa21.62■■□□□ 1.05
SYNE4-202ENST00000340477 CALCRLQ16602 461 aa21.62■■□□□ 1.05
SYNE4-202ENST00000340477 TMEM240Q5SV17 173 aa21.62■■□□□ 1.05
SYNE4-202ENST00000340477 ZNF365Q70YC5 407 aa21.62■■□□□ 1.05
SYNE4-202ENST00000340477 NOSTRINQ8IVI9 506 aa21.62■■□□□ 1.05
SYNE4-202ENST00000340477 BBXQ8WY36 941 aaPredicted RBP21.62■■□□□ 1.05
SYNE4-202ENST00000340477 GJA10Q969M2 543 aa21.62■■□□□ 1.05
SYNE4-202ENST00000340477 CEP131Q9UPN4 1083 aa21.62■■□□□ 1.05
SYNE4-202ENST00000340477 MAFBQ9Y5Q3 323 aaPredicted RBP21.62■■□□□ 1.05
SYNE4-202ENST00000340477 RSPH10B2B2RC85 870 aa21.61■■□□□ 1.05
SYNE4-202ENST00000340477 RSPH10BP0C881 870 aa21.61■■□□□ 1.05
SYNE4-202ENST00000340477 ATP2B1P20020 1258 aa21.61■■□□□ 1.05
SYNE4-202ENST00000340477 FXR1P51114 621 aaKnown RBP eCLIP21.61■■□□□ 1.05
SYNE4-202ENST00000340477 ORC2Q13416 577 aaPredicted RBP21.61■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms