RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 ITGB3BPQ13352 177 aaPredicted RBP20.22■□□□□ 0.83
HDDC3-201ENST00000330334 MARCH8Q5T0T0 291 aa20.22■□□□□ 0.83
HDDC3-201ENST00000330334 LIN28BQ6ZN17 250 aaKnown RBP eCLIP20.22■□□□□ 0.83
HDDC3-201ENST00000330334 BICD2Q8TD16 824 aa20.22■□□□□ 0.83
HDDC3-201ENST00000330334 TUBE1Q9UJT0 475 aa20.22■□□□□ 0.83
HDDC3-201ENST00000330334 MTCH2Q9Y6C9 303 aa20.22■□□□□ 0.83
HDDC3-201ENST00000330334 IGKV6D-21A0A0A0MT36 114 aa20.21■□□□□ 0.83
HDDC3-201ENST00000330334 LCHNA4D1U4 455 aa20.21■□□□□ 0.83
HDDC3-201ENST00000330334 FAM86B1E9PN63 330 aa20.21■□□□□ 0.83
HDDC3-201ENST00000330334 GTPBP6O43824 516 aaPredicted RBP20.21■□□□□ 0.83
HDDC3-201ENST00000330334 CHRNA1P02708 482 aa20.21■□□□□ 0.83
HDDC3-201ENST00000330334 CTSHP09668 335 aa20.21■□□□□ 0.83
HDDC3-201ENST00000330334 FAM86B2P0C5J1 330 aa20.21■□□□□ 0.83
HDDC3-201ENST00000330334 MARK3P27448 753 aa20.21■□□□□ 0.83
HDDC3-201ENST00000330334 STAT5BP51692 787 aa20.21■□□□□ 0.83
HDDC3-201ENST00000330334 HTRA4P83105 476 aaPredicted RBP20.21■□□□□ 0.83
HDDC3-201ENST00000330334 TJAP1Q5JTD0 557 aa20.21■□□□□ 0.83
HDDC3-201ENST00000330334 JAKMIP3Q5VZ66 844 aa20.21■□□□□ 0.83
HDDC3-201ENST00000330334 TMCO2Q7Z6W1 182 aaPredicted RBP20.21■□□□□ 0.83
HDDC3-201ENST00000330334 REXO1Q8N1G1 1221 aaKnown RBP20.21■□□□□ 0.83
HDDC3-201ENST00000330334 PPM1EQ8WY54 764 aa20.21■□□□□ 0.83
HDDC3-201ENST00000330334 ARNTL2Q8WYA1 636 aa20.21■□□□□ 0.83
HDDC3-201ENST00000330334 SH3GLB2Q9NR46 395 aa20.21■□□□□ 0.83
HDDC3-201ENST00000330334 CYP46A1Q9Y6A2 500 aa20.21■□□□□ 0.83
HDDC3-201ENST00000330334 SPTBN5Q9NRC6 3674 aaKnown RBP20.21■□□□□ 0.83
HDDC3-201ENST00000330334 IGLV3-22A0A075B6J6 115 aa20.2■□□□□ 0.82
HDDC3-201ENST00000330334 EPOPA6NHQ4 379 aa20.2■□□□□ 0.82
HDDC3-201ENST00000330334 INSRRP14616 1297 aa20.2■□□□□ 0.82
HDDC3-201ENST00000330334 ERVK-21P61565 698 aa20.2■□□□□ 0.82
HDDC3-201ENST00000330334 TOB2Q14106 344 aaPredicted RBP20.2■□□□□ 0.82
HDDC3-201ENST00000330334 RUFY4Q6ZNE9 571 aa20.2■□□□□ 0.82
HDDC3-201ENST00000330334 PLA2G4DQ86XP0 818 aa20.2■□□□□ 0.82
HDDC3-201ENST00000330334 PHKBQ93100 1093 aa20.2■□□□□ 0.82
HDDC3-201ENST00000330334 TOP1MTQ969P6 601 aa20.2■□□□□ 0.82
HDDC3-201ENST00000330334 ZNF274Q96GC6 653 aaPredicted RBP20.2■□□□□ 0.82
HDDC3-201ENST00000330334 OSBPL7Q9BZF2 842 aa20.2■□□□□ 0.82
HDDC3-201ENST00000330334 TSPYL2Q9H2G4 693 aaPredicted RBP20.2■□□□□ 0.82
HDDC3-201ENST00000330334 CERS4Q9HA82 394 aa20.2■□□□□ 0.82
HDDC3-201ENST00000330334 LMCD1Q9NZU5 365 aa20.2■□□□□ 0.82
HDDC3-201ENST00000330334 RFXAPO00287 272 aa20.19■□□□□ 0.82
HDDC3-201ENST00000330334 DHX15O43143 795 aaKnown RBP20.19■□□□□ 0.82
HDDC3-201ENST00000330334 CIITAP33076 1130 aa20.19■□□□□ 0.82
HDDC3-201ENST00000330334 SETQ01105 290 aaPredicted RBP20.19■□□□□ 0.82
HDDC3-201ENST00000330334 MGAT3Q09327 533 aa20.19■□□□□ 0.82
HDDC3-201ENST00000330334 PLCB4Q15147 1175 aa20.19■□□□□ 0.82
HDDC3-201ENST00000330334 CCDC85BQ15834 202 aaPredicted RBP20.19■□□□□ 0.82
HDDC3-201ENST00000330334 ABHD15Q6UXT9 468 aa20.19■□□□□ 0.82
HDDC3-201ENST00000330334 CCDC148Q8NFR7 591 aa20.19■□□□□ 0.82
HDDC3-201ENST00000330334 SP7Q8TDD2 431 aaPredicted RBP20.19■□□□□ 0.82
HDDC3-201ENST00000330334 TGS1Q96RS0 853 aaKnown RBP20.19■□□□□ 0.82
HDDC3-201ENST00000330334 IFIH1Q9BYX4 1025 aaKnown RBP20.19■□□□□ 0.82
HDDC3-201ENST00000330334 TBC1D22BQ9NU19 505 aa20.19■□□□□ 0.82
HDDC3-201ENST00000330334 PPP4R2Q9NY27 417 aa20.19■□□□□ 0.82
HDDC3-201ENST00000330334 THEGQ9P2T0 379 aa20.19■□□□□ 0.82
HDDC3-201ENST00000330334 SQORQ9Y6N5 450 aa20.19■□□□□ 0.82
HDDC3-201ENST00000330334 KAT6AQ92794 2004 aa20.19■□□□□ 0.82
HDDC3-201ENST00000330334 PTPRSQ13332 1948 aa20.18■□□□□ 0.82
HDDC3-201ENST00000330334 LINC01553A4QN01 128 aa20.18■□□□□ 0.82
HDDC3-201ENST00000330334 IPO5O00410 1097 aaKnown RBP20.18■□□□□ 0.82
HDDC3-201ENST00000330334 LPXNO60711 386 aa20.18■□□□□ 0.82
HDDC3-201ENST00000330334 CCNE2O96020 404 aa20.18■□□□□ 0.82
HDDC3-201ENST00000330334 FAM43BQ6ZT52 329 aaPredicted RBP20.18■□□□□ 0.82
HDDC3-201ENST00000330334 MYOCDQ8IZQ8 938 aa20.18■□□□□ 0.82
HDDC3-201ENST00000330334 FAM177A1Q8N128 213 aaPredicted RBP20.18■□□□□ 0.82
HDDC3-201ENST00000330334 DNAJB3Q8WWF6 145 aa20.18■□□□□ 0.82
HDDC3-201ENST00000330334 SLC26A6Q9BXS9 759 aa20.18■□□□□ 0.82
HDDC3-201ENST00000330334 PRDM6Q9NQX0 595 aa20.18■□□□□ 0.82
HDDC3-201ENST00000330334 PCDHA2Q9Y5H9 948 aa20.18■□□□□ 0.82
HDDC3-201ENST00000330334 REV3LO60673 3130 aa20.18■□□□□ 0.82
HDDC3-201ENST00000330334 LOC101059915A0A1B0GWI6 518 aaPredicted RBP20.17■□□□□ 0.82
HDDC3-201ENST00000330334 POTEB3A0JP26 581 aa20.17■□□□□ 0.82
HDDC3-201ENST00000330334 ADAMTS3O15072 1205 aa20.17■□□□□ 0.82
HDDC3-201ENST00000330334 MRPS5P82675 430 aaKnown RBP20.17■□□□□ 0.82
HDDC3-201ENST00000330334 GRB10Q13322 594 aa20.17■□□□□ 0.82
HDDC3-201ENST00000330334 IER5Q5VY09 327 aa20.17■□□□□ 0.82
HDDC3-201ENST00000330334 POTEBQ6S5H4 581 aa20.17■□□□□ 0.82
HDDC3-201ENST00000330334 TRIM22Q8IYM9 498 aa20.17■□□□□ 0.82
HDDC3-201ENST00000330334 NME8Q8N427 588 aa20.17■□□□□ 0.82
HDDC3-201ENST00000330334 ASB2Q96Q27 587 aa20.17■□□□□ 0.82
HDDC3-201ENST00000330334 TRPC6Q9Y210 931 aa20.17■□□□□ 0.82
HDDC3-201ENST00000330334 XIRP2A4UGR9 3374 aa20.17■□□□□ 0.82
HDDC3-201ENST00000330334 PRRC2BQ5JSZ5 2229 aaKnown RBP20.17■□□□□ 0.82
HDDC3-201ENST00000330334 USP11P51784 963 aa20.16■□□□□ 0.82
HDDC3-201ENST00000330334 CCT2P78371 535 aaKnown RBP20.16■□□□□ 0.82
HDDC3-201ENST00000330334 LPIN1Q14693 890 aa20.16■□□□□ 0.82
HDDC3-201ENST00000330334 FBXO47Q5MNV8 452 aa20.16■□□□□ 0.82
HDDC3-201ENST00000330334 FAM160B1Q5W0V3 765 aa20.16■□□□□ 0.82
HDDC3-201ENST00000330334 ZNF746Q6NUN9 644 aaPredicted RBP20.16■□□□□ 0.82
HDDC3-201ENST00000330334 MIS18BP1Q6P0N0 1132 aa20.16■□□□□ 0.82
HDDC3-201ENST00000330334 FAM117BQ6P1L5 589 aa20.16■□□□□ 0.82
HDDC3-201ENST00000330334 ZNF577Q9BSK1 485 aa20.16■□□□□ 0.82
HDDC3-201ENST00000330334 SUGCTQ9HAC7 445 aa20.16■□□□□ 0.82
HDDC3-201ENST00000330334 NCOA5Q9HCD5 579 aaKnown RBP20.16■□□□□ 0.82
HDDC3-201ENST00000330334 MUC3AQ02505 3323 aa20.15■□□□□ 0.82
HDDC3-201ENST00000330334 SMIM35A0A1B0GVV1 85 aa20.15■□□□□ 0.82
HDDC3-201ENST00000330334 HBP1O60381 514 aa20.15■□□□□ 0.82
HDDC3-201ENST00000330334 GHRP10912 638 aa20.15■□□□□ 0.82
HDDC3-201ENST00000330334 IGBP1P78318 339 aa20.15■□□□□ 0.82
HDDC3-201ENST00000330334 MRPS6P82932 125 aaKnown RBP20.15■□□□□ 0.82
HDDC3-201ENST00000330334 SSRP1Q08945 709 aaKnown RBP20.15■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms