RNA–Protein interactions for RNA: ENST00000298281.8

PCF11-201, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCF11, Length 7,677 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-201ENST00000298281 CAPS2Q9BXY5 557 aa12.97□□□□□ -0.33
PCF11-201ENST00000298281 SATB2Q9UPW6 733 aa12.97□□□□□ -0.33
PCF11-201ENST00000298281 EPN1Q9Y6I3 576 aaPredicted RBP12.97□□□□□ -0.33
PCF11-201ENST00000298281 SRGAP2CP0DJJ0 459 aa12.96□□□□□ -0.33
PCF11-201ENST00000298281 KRT4P19013 534 aa12.96□□□□□ -0.33
PCF11-201ENST00000298281 ZSCAN26Q16670 478 aa12.96□□□□□ -0.33
PCF11-201ENST00000298281 STAMQ92783 540 aa12.96□□□□□ -0.33
PCF11-201ENST00000298281 DDX17Q92841 729 aaKnown RBP12.96□□□□□ -0.33
PCF11-201ENST00000298281 TNNQ9UQP3 1299 aa12.96□□□□□ -0.33
PCF11-201ENST00000298281 hCG_1984214I3L0E3 225 aa12.96□□□□□ -0.33
PCF11-201ENST00000298281 NR5A1Q13285 461 aa12.96□□□□□ -0.33
PCF11-201ENST00000298281 ZNF713Q8N859 430 aaPredicted RBP12.96□□□□□ -0.33
PCF11-201ENST00000298281 OR9Q1Q8NGQ5 310 aa12.96□□□□□ -0.33
PCF11-201ENST00000298281 WDR11Q9BZH6 1224 aa12.96□□□□□ -0.33
PCF11-201ENST00000298281 TRAF3IP3Q9Y228 551 aa12.96□□□□□ -0.33
PCF11-201ENST00000298281 PNMA6EA0A0J9YXQ4 647 aa12.96□□□□□ -0.33
PCF11-201ENST00000298281 GNGT1P63211 74 aa12.96□□□□□ -0.33
PCF11-201ENST00000298281 KLC2Q9H0B6 622 aa12.96□□□□□ -0.33
PCF11-201ENST00000298281 UPF3AQ9H1J1 476 aaKnown RBP12.96□□□□□ -0.33
PCF11-201ENST00000298281 ARHGEF3Q9NR81 526 aa12.96□□□□□ -0.33
PCF11-201ENST00000298281 LMBRD1Q9NUN5 540 aa12.96□□□□□ -0.33
PCF11-201ENST00000298281 KIF21AQ7Z4S6 1674 aa12.96□□□□□ -0.33
PCF11-201ENST00000298281 ATP10DQ9P241 1426 aa12.96□□□□□ -0.33
PCF11-201ENST00000298281 POLR2FP61218 127 aaKnown RBP12.96□□□□□ -0.33
PCF11-201ENST00000298281 THEMIS2Q5TEJ8 643 aa12.96□□□□□ -0.33
PCF11-201ENST00000298281 FBXO18Q8NFZ0 1043 aa12.96□□□□□ -0.33
PCF11-201ENST00000298281 SLC7A3Q8WY07 619 aa12.96□□□□□ -0.33
PCF11-201ENST00000298281 HPS4Q9NQG7 708 aa12.96□□□□□ -0.33
PCF11-201ENST00000298281 RNF14Q9UBS8 474 aa12.96□□□□□ -0.33
PCF11-201ENST00000298281 CTTNBP2Q8WZ74 1663 aa12.96□□□□□ -0.33
PCF11-201ENST00000298281 TNKSO95271 1327 aa12.96□□□□□ -0.34
PCF11-201ENST00000298281 TTC23LQ6PF05 361 aa12.96□□□□□ -0.34
PCF11-201ENST00000298281 UHMK1Q8TAS1 419 aaKnown RBP12.96□□□□□ -0.34
PCF11-201ENST00000298281 DNAJC6O75061 913 aa12.96□□□□□ -0.34
PCF11-201ENST00000298281 OCA2Q04671 838 aa12.96□□□□□ -0.34
PCF11-201ENST00000298281 C10orf76Q5T2E6 689 aa12.96□□□□□ -0.34
PCF11-201ENST00000298281 MID2Q9UJV3 735 aa12.96□□□□□ -0.34
PCF11-201ENST00000298281 L3MBTL1Q9Y468 752 aa12.96□□□□□ -0.34
PCF11-201ENST00000298281 MAP2K2P36507 400 aa12.95□□□□□ -0.34
PCF11-201ENST00000298281 DEPDC1Q5TB30 811 aa12.95□□□□□ -0.34
PCF11-201ENST00000298281 PCGF5Q86SE9 256 aa12.95□□□□□ -0.34
PCF11-201ENST00000298281 DHTKD1Q96HY7 919 aaPredicted RBP12.95□□□□□ -0.34
PCF11-201ENST00000298281 TUBB6Q9BUF5 446 aa12.95□□□□□ -0.34
PCF11-201ENST00000298281 LRRC4Q9HBW1 653 aa12.95□□□□□ -0.34
PCF11-201ENST00000298281 CAPN7Q9Y6W3 813 aa12.95□□□□□ -0.34
PCF11-201ENST00000298281 TBL3Q12788 808 aaKnown RBP12.95□□□□□ -0.34
PCF11-201ENST00000298281 UBE3CQ15386 1083 aa12.95□□□□□ -0.34
PCF11-201ENST00000298281 SF3B3Q15393 1217 aaKnown RBP12.95□□□□□ -0.34
PCF11-201ENST00000298281 AP1ARQ63HQ0 302 aa12.95□□□□□ -0.34
PCF11-201ENST00000298281 ANKS3Q6ZW76 656 aa12.95□□□□□ -0.34
PCF11-201ENST00000298281 WARS2Q9UGM6 360 aaKnown RBP12.95□□□□□ -0.34
PCF11-201ENST00000298281 PPP2R2CQ9Y2T4 447 aa12.95□□□□□ -0.34
PCF11-201ENST00000298281 NCKAP5LQ9HCH0 1330 aa12.95□□□□□ -0.34
PCF11-201ENST00000298281 EIF4A1P60842 406 aaKnown RBP12.95□□□□□ -0.34
PCF11-201ENST00000298281 ME3Q16798 604 aa12.95□□□□□ -0.34
PCF11-201ENST00000298281 RAB42Q8N4Z0 105 aa12.95□□□□□ -0.34
PCF11-201ENST00000298281 KCTD6Q8NC69 237 aa12.95□□□□□ -0.34
PCF11-201ENST00000298281 ZNF496Q96IT1 587 aaPredicted RBP12.95□□□□□ -0.34
PCF11-201ENST00000298281 ASPSCR1Q9BZE9 553 aa12.95□□□□□ -0.34
PCF11-201ENST00000298281 MRPL47Q9HD33 250 aaKnown RBP12.95□□□□□ -0.34
PCF11-201ENST00000298281 AFF4Q9UHB7 1163 aaKnown RBP12.95□□□□□ -0.34
PCF11-201ENST00000298281 MED7O43513 233 aa12.95□□□□□ -0.34
PCF11-201ENST00000298281 MYL7Q01449 175 aa12.95□□□□□ -0.34
PCF11-201ENST00000298281 KCTD2Q14681 263 aa12.95□□□□□ -0.34
PCF11-201ENST00000298281 STXBP2Q15833 593 aa12.95□□□□□ -0.34
PCF11-201ENST00000298281 ODR4Q5SWX8 454 aa12.95□□□□□ -0.34
PCF11-201ENST00000298281 OTUD7AQ8TE49 926 aaPredicted RBP12.95□□□□□ -0.34
PCF11-201ENST00000298281 PCDHA1Q9Y5I3 950 aa12.95□□□□□ -0.34
PCF11-201ENST00000298281 ARHGAP10A1A4S6 786 aa12.95□□□□□ -0.34
PCF11-201ENST00000298281 HNRNPDLO14979 420 aaKnown RBP12.95□□□□□ -0.34
PCF11-201ENST00000298281 LBRQ14739 615 aaKnown RBP12.95□□□□□ -0.34
PCF11-201ENST00000298281 SLFN13Q68D06 897 aa12.95□□□□□ -0.34
PCF11-201ENST00000298281 USP6NLQ92738 828 aa12.95□□□□□ -0.34
PCF11-201ENST00000298281 USP14P54578 494 aa12.95□□□□□ -0.34
PCF11-201ENST00000298281 CATSPER3Q86XQ3 398 aa12.95□□□□□ -0.34
PCF11-201ENST00000298281 SSH3Q8TE77 659 aa12.95□□□□□ -0.34
PCF11-201ENST00000298281 CCDC127Q96BQ5 260 aa12.95□□□□□ -0.34
PCF11-201ENST00000298281 MCF2LO15068 1137 aa12.94□□□□□ -0.34
PCF11-201ENST00000298281 PJA2O43164 708 aa12.94□□□□□ -0.34
PCF11-201ENST00000298281 SEC24BO95487 1268 aa12.94□□□□□ -0.34
PCF11-201ENST00000298281 DPYDQ12882 1025 aa12.94□□□□□ -0.34
PCF11-201ENST00000298281 ABCB5Q2M3G0 1257 aa12.94□□□□□ -0.34
PCF11-201ENST00000298281 KLHL24Q6TFL4 600 aa12.94□□□□□ -0.34
PCF11-201ENST00000298281 FOXP1Q9H334 677 aaPredicted RBP12.94□□□□□ -0.34
PCF11-201ENST00000298281 NDE1Q9NXR1 346 aa12.94□□□□□ -0.34
PCF11-201ENST00000298281 PCCAP05165 728 aaPredicted RBP12.94□□□□□ -0.34
PCF11-201ENST00000298281 ZFXP17010 805 aaPredicted RBP12.94□□□□□ -0.34
PCF11-201ENST00000298281 PSMC2P35998 433 aaKnown RBP12.94□□□□□ -0.34
PCF11-201ENST00000298281 MED21Q13503 144 aa12.94□□□□□ -0.34
PCF11-201ENST00000298281 FAM98CQ17RN3 349 aaKnown RBP12.94□□□□□ -0.34
PCF11-201ENST00000298281 SRRM1Q8IYB3 904 aaKnown RBP12.94□□□□□ -0.34
PCF11-201ENST00000298281 IFT43Q96FT9 208 aa12.94□□□□□ -0.34
PCF11-201ENST00000298281 KRT17Q04695 432 aa12.94□□□□□ -0.34
PCF11-201ENST00000298281 SURF1Q15526 300 aa12.94□□□□□ -0.34
PCF11-201ENST00000298281 TMEM206Q9H813 350 aa12.94□□□□□ -0.34
PCF11-201ENST00000298281 ZSWIM6Q9HCJ5 1215 aa12.94□□□□□ -0.34
PCF11-201ENST00000298281 A0A1W2PQ27 194 aa12.94□□□□□ -0.34
PCF11-201ENST00000298281 A0A1W2PQ64 194 aa12.94□□□□□ -0.34
PCF11-201ENST00000298281 A0A1W2PQD8 194 aa12.94□□□□□ -0.34
PCF11-201ENST00000298281 AHI1Q8N157 1196 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms