RNA–Protein interactions for RNA: ENST00000251775.8

SNX4-201, Transcript of sorting nexin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX4, Length 2,513 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX4-201ENST00000251775 NOX5Q96PH1 765 aa20.79■□□□□ 0.92
SNX4-201ENST00000251775 NDST4Q9H3R1 872 aa20.79■□□□□ 0.92
SNX4-201ENST00000251775 CRKP46108 304 aa20.78■□□□□ 0.92
SNX4-201ENST00000251775 CACNB3P54284 484 aa20.78■□□□□ 0.92
SNX4-201ENST00000251775 EHHADHQ08426 723 aa20.78■□□□□ 0.92
SNX4-201ENST00000251775 RRAGAQ7L523 313 aa20.78■□□□□ 0.92
SNX4-201ENST00000251775 C1orf131Q8NDD1 294 aaKnown RBP20.78■□□□□ 0.92
SNX4-201ENST00000251775 CASKIN2Q8WXE0 1202 aa20.78■□□□□ 0.92
SNX4-201ENST00000251775 BAP1Q92560 729 aa20.78■□□□□ 0.92
SNX4-201ENST00000251775 MMRN2Q9H8L6 949 aa20.78■□□□□ 0.92
SNX4-201ENST00000251775 PSTPIP2Q9H939 334 aa20.78■□□□□ 0.92
SNX4-201ENST00000251775 G3V3G9 751 aa20.78■□□□□ 0.92
SNX4-201ENST00000251775 SLC1A4P43007 532 aa20.78■□□□□ 0.92
SNX4-201ENST00000251775 ITGB3BPQ13352 177 aaPredicted RBP20.78■□□□□ 0.92
SNX4-201ENST00000251775 LRRC41Q15345 812 aa20.78■□□□□ 0.92
SNX4-201ENST00000251775 RNF187Q5TA31 235 aaPredicted RBP20.78■□□□□ 0.92
SNX4-201ENST00000251775 DCAF8Q5TAQ9 597 aa20.78■□□□□ 0.92
SNX4-201ENST00000251775 PAXIP1Q6ZW49 1069 aaPredicted RBP20.78■□□□□ 0.92
SNX4-201ENST00000251775 KRT27Q7Z3Y8 459 aa20.78■□□□□ 0.92
SNX4-201ENST00000251775 ZKSCAN4Q969J2 545 aaPredicted RBP20.78■□□□□ 0.92
SNX4-201ENST00000251775 DBNDD1Q9H9R9 158 aa20.78■□□□□ 0.92
SNX4-201ENST00000251775 RNF14Q9UBS8 474 aa20.78■□□□□ 0.92
SNX4-201ENST00000251775 ATF5Q9Y2D1 282 aaPredicted RBP20.78■□□□□ 0.92
SNX4-201ENST00000251775 TRADDQ15628 312 aa20.77■□□□□ 0.92
SNX4-201ENST00000251775 COL23A1Q86Y22 540 aaPredicted RBP20.77■□□□□ 0.92
SNX4-201ENST00000251775 RNF10Q8N5U6 811 aaKnown RBP20.77■□□□□ 0.92
SNX4-201ENST00000251775 UIMC1Q96RL1 719 aa20.77■□□□□ 0.92
SNX4-201ENST00000251775 TSKSQ9UJT2 592 aa20.77■□□□□ 0.92
SNX4-201ENST00000251775 GGA2Q9UJY4 613 aa20.77■□□□□ 0.92
SNX4-201ENST00000251775 FAM107AO95990 144 aa20.77■□□□□ 0.92
SNX4-201ENST00000251775 CCDC172P0C7W6 258 aa20.77■□□□□ 0.92
SNX4-201ENST00000251775 HSPA1LP34931 641 aa20.77■□□□□ 0.92
SNX4-201ENST00000251775 SMTNP53814 917 aa20.77■□□□□ 0.92
SNX4-201ENST00000251775 TCP10Q12799 353 aa20.77■□□□□ 0.92
SNX4-201ENST00000251775 IFT88Q13099 833 aa20.77■□□□□ 0.92
SNX4-201ENST00000251775 C6orf89Q6UWU4 347 aa20.77■□□□□ 0.92
SNX4-201ENST00000251775 RPAINQ86UA6 219 aa20.77■□□□□ 0.92
SNX4-201ENST00000251775 HMGB1P1B2RPK0 211 aaPredicted RBP20.76■□□□□ 0.91
SNX4-201ENST00000251775 USP17L15C9J2P7 530 aa20.76■□□□□ 0.91
SNX4-201ENST00000251775 USP17L13C9JLJ4 530 aa20.76■□□□□ 0.91
SNX4-201ENST00000251775 USP17L11C9JVI0 530 aa20.76■□□□□ 0.91
SNX4-201ENST00000251775 USP17L18D6R9N7 530 aa20.76■□□□□ 0.91
SNX4-201ENST00000251775 USP17L22D6RA61 530 aa20.76■□□□□ 0.91
SNX4-201ENST00000251775 USP17L17D6RBQ6 530 aa20.76■□□□□ 0.91
SNX4-201ENST00000251775 USP17L19D6RCP7 530 aa20.76■□□□□ 0.91
SNX4-201ENST00000251775 USP17L20D6RJB6 530 aa20.76■□□□□ 0.91
SNX4-201ENST00000251775 CHUKO15111 745 aa20.76■□□□□ 0.91
SNX4-201ENST00000251775 RASSF9O75901 435 aa20.76■□□□□ 0.91
SNX4-201ENST00000251775 ALDH1B1P30837 517 aa20.76■□□□□ 0.91
SNX4-201ENST00000251775 PSEN1P49768 467 aa20.76■□□□□ 0.91
SNX4-201ENST00000251775 USP17L24Q0WX57 530 aa20.76■□□□□ 0.91
SNX4-201ENST00000251775 USP17L6PQ6QN14 398 aa20.76■□□□□ 0.91
SNX4-201ENST00000251775 CCDC13Q8IYE1 715 aa20.76■□□□□ 0.91
SNX4-201ENST00000251775 NLGN1Q8N2Q7 840 aa20.76■□□□□ 0.91
SNX4-201ENST00000251775 DNAJC19Q96DA6 116 aa20.76■□□□□ 0.91
SNX4-201ENST00000251775 CCDC17Q96LX7 622 aa20.76■□□□□ 0.91
SNX4-201ENST00000251775 KLC4Q9NSK0 619 aa20.76■□□□□ 0.91
SNX4-201ENST00000251775 RAD21O60216 631 aa20.76■□□□□ 0.91
SNX4-201ENST00000251775 QRICH1Q2TAL8 776 aa20.76■□□□□ 0.91
SNX4-201ENST00000251775 CCDC40Q4G0X9 1142 aa20.76■□□□□ 0.91
SNX4-201ENST00000251775 KRT12Q99456 494 aa20.76■□□□□ 0.91
SNX4-201ENST00000251775 PCDHA12Q9UN75 941 aa20.76■□□□□ 0.91
SNX4-201ENST00000251775 DDTLA6NHG4 134 aaPredicted RBP20.75■□□□□ 0.91
SNX4-201ENST00000251775 EEF2P13639 858 aaKnown RBP20.75■□□□□ 0.91
SNX4-201ENST00000251775 PLCB4Q15147 1175 aa20.75■□□□□ 0.91
SNX4-201ENST00000251775 HGSNATQ68CP4 663 aa20.75■□□□□ 0.91
SNX4-201ENST00000251775 LRRC55Q6ZSA7 311 aa20.75■□□□□ 0.91
SNX4-201ENST00000251775 KIAA0825Q8IV33 1275 aa20.75■□□□□ 0.91
SNX4-201ENST00000251775 WHAMMQ8TF30 809 aa20.75■□□□□ 0.91
SNX4-201ENST00000251775 ZDHHC15Q96MV8 337 aa20.75■□□□□ 0.91
SNX4-201ENST00000251775 SRRM3A6NNA2 597 aaPredicted RBP20.75■□□□□ 0.91
SNX4-201ENST00000251775 MARCH6O60337 910 aa20.75■□□□□ 0.91
SNX4-201ENST00000251775 GCFC2P16383 781 aaKnown RBP20.75■□□□□ 0.91
SNX4-201ENST00000251775 LRRC63Q05C16 580 aa20.75■□□□□ 0.91
SNX4-201ENST00000251775 MAN2A1Q16706 1144 aa20.75■□□□□ 0.91
SNX4-201ENST00000251775 PDXDC1Q6P996 788 aa20.75■□□□□ 0.91
SNX4-201ENST00000251775 LRRC27Q9C0I9 530 aa20.75■□□□□ 0.91
SNX4-201ENST00000251775 SCN9AQ15858 1988 aa20.75■□□□□ 0.91
SNX4-201ENST00000251775 E7EVH7 732 aa20.74■□□□□ 0.91
SNX4-201ENST00000251775 PSMD2Q13200 908 aa20.74■□□□□ 0.91
SNX4-201ENST00000251775 CCDC84Q86UT8 332 aaPredicted RBP20.74■□□□□ 0.91
SNX4-201ENST00000251775 PLAAQ9Y263 795 aa20.74■□□□□ 0.91
SNX4-201ENST00000251775 SSU72P8A0A1W2PR75 194 aa20.74■□□□□ 0.91
SNX4-201ENST00000251775 ERCC3P19447 782 aa20.74■□□□□ 0.91
SNX4-201ENST00000251775 DNA2P51530 1060 aa20.74■□□□□ 0.91
SNX4-201ENST00000251775 COASYQ13057 564 aa20.74■□□□□ 0.91
SNX4-201ENST00000251775 CEP85LQ5SZL2 805 aa20.74■□□□□ 0.91
SNX4-201ENST00000251775 TMBIM4Q9HC24 238 aa20.74■□□□□ 0.91
SNX4-201ENST00000251775 DONSONQ9NYP3 566 aa20.74■□□□□ 0.91
SNX4-201ENST00000251775 RBAK-RBAKDNI3L0D1 243 aa20.73■□□□□ 0.91
SNX4-201ENST00000251775 PALMO75781 387 aa20.73■□□□□ 0.91
SNX4-201ENST00000251775 PDE6BP35913 854 aa20.73■□□□□ 0.91
SNX4-201ENST00000251775 HSPA9P38646 679 aaKnown RBP20.73■□□□□ 0.91
SNX4-201ENST00000251775 HYIQ5T013 277 aa20.73■□□□□ 0.91
SNX4-201ENST00000251775 SH3BP5LQ7L8J4 393 aa20.73■□□□□ 0.91
SNX4-201ENST00000251775 MKL1Q969V6 931 aa20.73■□□□□ 0.91
SNX4-201ENST00000251775 CYFIP2Q96F07 1278 aa20.73■□□□□ 0.91
SNX4-201ENST00000251775 INPP4AQ96PE3 977 aaPredicted RBP20.73■□□□□ 0.91
SNX4-201ENST00000251775 FAM198AQ9UFP1 575 aa20.73■□□□□ 0.91
SNX4-201ENST00000251775 PCDHA1Q9Y5I3 950 aa20.73■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms