RNA–Protein interactions for RNA: ENST00000620996.4

VTA1-205, Transcript of vesicle trafficking 1, humanhuman

TSL 3 BASIC

Gene VTA1, Length 3,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1-205ENST00000620996 DNAJC19Q96DA6 116 aa11.02□□□□□ -0.65
VTA1-205ENST00000620996 KLRG1Q96E93 195 aa11.02□□□□□ -0.65
VTA1-205ENST00000620996 PPP1R13BQ96KQ4 1090 aa11.02□□□□□ -0.65
VTA1-205ENST00000620996 RMDN3Q96TC7 470 aa11.02□□□□□ -0.65
VTA1-205ENST00000620996 SYT17Q9BSW7 474 aa11.02□□□□□ -0.65
VTA1-205ENST00000620996 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.02□□□□□ -0.652e-6■□□□□ 10
VTA1-205ENST00000620996 CSADQ9Y600 493 aa11.02□□□□□ -0.65
VTA1-205ENST00000620996 ERICH4A6NGS2 130 aa11.02□□□□□ -0.65
VTA1-205ENST00000620996 SPATA31C1P0DKV0 1188 aa11.02□□□□□ -0.65
VTA1-205ENST00000620996 TBC1D8BQ0IIM8 1120 aa11.02□□□□□ -0.65
VTA1-205ENST00000620996 KRT26Q7Z3Y9 468 aa11.02□□□□□ -0.65
VTA1-205ENST00000620996 SYTL5Q8TDW5 730 aaPredicted RBP11.02□□□□□ -0.65
VTA1-205ENST00000620996 CNKSR2Q8WXI2 1034 aa11.02□□□□□ -0.65
VTA1-205ENST00000620996 MXRA8Q9BRK3 442 aa11.02□□□□□ -0.65
VTA1-205ENST00000620996 UNC45AQ9H3U1 944 aa11.02□□□□□ -0.65
VTA1-205ENST00000620996 GINM1Q9NU53 330 aa11.02□□□□□ -0.65
VTA1-205ENST00000620996 RIPK3Q9Y572 518 aa11.02□□□□□ -0.65
VTA1-205ENST00000620996 SOWAHDA6NJG2 315 aa11.01□□□□□ -0.65
VTA1-205ENST00000620996 SETQ01105 290 aaPredicted RBP11.01□□□□□ -0.65
VTA1-205ENST00000620996 TBX2Q13207 712 aaPredicted RBP11.01□□□□□ -0.65
VTA1-205ENST00000620996 BAATQ14032 418 aaPredicted RBP11.01□□□□□ -0.65
VTA1-205ENST00000620996 GADL1Q6ZQY3 521 aa11.01□□□□□ -0.65
VTA1-205ENST00000620996 OTOP1Q7RTM1 612 aa11.01□□□□□ -0.65
VTA1-205ENST00000620996 MIER3Q7Z3K6 550 aa11.01□□□□□ -0.65
VTA1-205ENST00000620996 REEP2Q9BRK0 252 aa11.01□□□□□ -0.65
VTA1-205ENST00000620996 ADARB2Q9NS39 739 aaKnown RBP11.01□□□□□ -0.65
VTA1-205ENST00000620996 RSPH10B2B2RC85 870 aa11.01□□□□□ -0.65
VTA1-205ENST00000620996 PPP1R12BO60237 982 aaPredicted RBP11.01□□□□□ -0.65
VTA1-205ENST00000620996 RSPH10BP0C881 870 aa11.01□□□□□ -0.65
VTA1-205ENST00000620996 YBX3P16989 372 aaKnown RBP eCLIP11.01□□□□□ -0.651e-7■■■■□ 23.4
VTA1-205ENST00000620996 ITGB5P18084 799 aa11.01□□□□□ -0.65
VTA1-205ENST00000620996 TRIM21P19474 475 aaKnown RBP11.01□□□□□ -0.65
VTA1-205ENST00000620996 FXR1P51114 621 aaKnown RBP eCLIP11.01□□□□□ -0.65
VTA1-205ENST00000620996 SLC12A3P55017 1021 aa11.01□□□□□ -0.65
VTA1-205ENST00000620996 MTMR1Q13613 665 aa11.01□□□□□ -0.65
VTA1-205ENST00000620996 MTF1Q14872 753 aa11.01□□□□□ -0.65
VTA1-205ENST00000620996 TSR1Q2NL82 804 aaKnown RBP11.01□□□□□ -0.65
VTA1-205ENST00000620996 HYIQ5T013 277 aa11.01□□□□□ -0.65
VTA1-205ENST00000620996 FKBP15Q5T1M5 1219 aa11.01□□□□□ -0.65
VTA1-205ENST00000620996 SFR1Q86XK3 245 aa11.01□□□□□ -0.65
VTA1-205ENST00000620996 GUF1Q8N442 669 aaKnown RBP11.01□□□□□ -0.65
VTA1-205ENST00000620996 RUSC1Q9BVN2 902 aa11.01□□□□□ -0.65
VTA1-205ENST00000620996 ELP3Q9H9T3 547 aa11.01□□□□□ -0.65
VTA1-205ENST00000620996 ATAD5Q96QE3 1844 aa11.01□□□□□ -0.65
VTA1-205ENST00000620996 LGALS16A8MUM7 142 aa11.01□□□□□ -0.65
VTA1-205ENST00000620996 ARHGAP6O43182 974 aa11.01□□□□□ -0.65
VTA1-205ENST00000620996 PEX10O60683 326 aa11.01□□□□□ -0.65
VTA1-205ENST00000620996 FAM13AO94988 1023 aa11.01□□□□□ -0.65
VTA1-205ENST00000620996 FGFR1OPO95684 399 aaKnown RBP11.01□□□□□ -0.65
VTA1-205ENST00000620996 GYPCP04921 128 aa11.01□□□□□ -0.65
VTA1-205ENST00000620996 HSD17B4P51659 736 aa11.01□□□□□ -0.65
VTA1-205ENST00000620996 PSMD2Q13200 908 aa11.01□□□□□ -0.65
VTA1-205ENST00000620996 VGLL4Q14135 290 aa11.01□□□□□ -0.65
VTA1-205ENST00000620996 ARSHQ5FYA8 562 aa11.01□□□□□ -0.65
VTA1-205ENST00000620996 TOGARAM2Q6ZUX3 1019 aa11.01□□□□□ -0.65
VTA1-205ENST00000620996 MB21D1Q8N884 522 aa11.01□□□□□ -0.65
VTA1-205ENST00000620996 SH2D3AQ9BRG2 576 aa11.01□□□□□ -0.65
VTA1-205ENST00000620996 MRPL44Q9H9J2 332 aaKnown RBP11.01□□□□□ -0.65
VTA1-205ENST00000620996 KCNH7Q9NS40 1196 aa11.01□□□□□ -0.65
VTA1-205ENST00000620996 MFAP3LO75121 409 aa11□□□□□ -0.65
VTA1-205ENST00000620996 GCNT3O95395 438 aa11□□□□□ -0.65
VTA1-205ENST00000620996 KRT9P35527 623 aa11□□□□□ -0.65
VTA1-205ENST00000620996 KLK7P49862 253 aa11□□□□□ -0.65
VTA1-205ENST00000620996 COG2Q14746 738 aa11□□□□□ -0.65
VTA1-205ENST00000620996 SYCP1Q15431 976 aa11□□□□□ -0.65
VTA1-205ENST00000620996 MOB2Q70IA6 237 aa11□□□□□ -0.65
VTA1-205ENST00000620996 CNGA4Q8IV77 575 aa11□□□□□ -0.65
VTA1-205ENST00000620996 MYCT1Q8N699 235 aa11□□□□□ -0.65
VTA1-205ENST00000620996 SLC5A5Q92911 643 aa11□□□□□ -0.65
VTA1-205ENST00000620996 OTUD5Q96G74 571 aa11□□□□□ -0.65
VTA1-205ENST00000620996 STK24Q9Y6E0 443 aa11□□□□□ -0.65
VTA1-205ENST00000620996 RIOK3O14730 519 aaKnown RBP11□□□□□ -0.65
VTA1-205ENST00000620996 PSMD10O75832 226 aa11□□□□□ -0.65
VTA1-205ENST00000620996 GPR162Q16538 588 aa11□□□□□ -0.65
VTA1-205ENST00000620996 SYT10Q6XYQ8 523 aa11□□□□□ -0.65
VTA1-205ENST00000620996 LXNQ9BS40 222 aa11□□□□□ -0.65
VTA1-205ENST00000620996 ZNF112Q9UJU3 913 aa11□□□□□ -0.65
VTA1-205ENST00000620996 ARHGEF35A5YM69 484 aa10.99□□□□□ -0.65
VTA1-205ENST00000620996 CCP110O43303 1012 aa10.99□□□□□ -0.65
VTA1-205ENST00000620996 ZSCAN12O43309 604 aa10.99□□□□□ -0.65
VTA1-205ENST00000620996 USP2O75604 605 aaPredicted RBP10.99□□□□□ -0.65
VTA1-205ENST00000620996 PRPF6O94906 941 aaKnown RBP10.99□□□□□ -0.65
VTA1-205ENST00000620996 SLITRK3O94933 977 aa10.99□□□□□ -0.65
VTA1-205ENST00000620996 SEMA3FQ13275 785 aa10.99□□□□□ -0.65
VTA1-205ENST00000620996 GIT2Q14161 759 aa10.99□□□□□ -0.65
VTA1-205ENST00000620996 TKFCQ3LXA3 575 aa10.99□□□□□ -0.65
VTA1-205ENST00000620996 CENPPQ6IPU0 288 aa10.99□□□□□ -0.65
VTA1-205ENST00000620996 DPY19L2Q6NUT2 758 aa10.99□□□□□ -0.65
VTA1-205ENST00000620996 SYT2Q8N9I0 419 aaPredicted RBP10.99□□□□□ -0.65
VTA1-205ENST00000620996 BCAS3Q9H6U6 928 aa10.99□□□□□ -0.65
VTA1-205ENST00000620996 ZNF408Q9H9D4 720 aa10.99□□□□□ -0.65
VTA1-205ENST00000620996 C19orf81C9J6K1 198 aa10.99□□□□□ -0.65
VTA1-205ENST00000620996 NKRFO15226 690 aaKnown RBP eCLIP10.99□□□□□ -0.65
VTA1-205ENST00000620996 STX10O60499 249 aa10.99□□□□□ -0.65
VTA1-205ENST00000620996 MAP3K9P80192 1104 aa10.99□□□□□ -0.65
VTA1-205ENST00000620996 PAGR1Q9BTK6 254 aa10.99□□□□□ -0.65
VTA1-205ENST00000620996 POLR3CQ9BUI4 534 aaPredicted RBP10.99□□□□□ -0.65
VTA1-205ENST00000620996 MMRN2Q9H8L6 949 aa10.99□□□□□ -0.65
VTA1-205ENST00000620996 PPP2R2CQ9Y2T4 447 aa10.99□□□□□ -0.65
VTA1-205ENST00000620996 PPP2R3BQ9Y5P8 575 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms