RNA–Protein interactions for RNA: ENST00000600733.5

SHKBP1-225, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5 BASIC

Gene SHKBP1, Length 2,284 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-225ENST00000600733 KRT18P05783 430 aaKnown RBP22.29■■□□□ 1.16
SHKBP1-225ENST00000600733 HLA-DOAP06340 250 aa22.29■■□□□ 1.16
SHKBP1-225ENST00000600733 PAFAH1B1P43034 410 aa22.29■■□□□ 1.16
SHKBP1-225ENST00000600733 CASP5P51878 434 aa22.29■■□□□ 1.16
SHKBP1-225ENST00000600733 APOBEC3HQ6NTF7 200 aaKnown RBP22.29■■□□□ 1.16
SHKBP1-225ENST00000600733 RNF10Q8N5U6 811 aaKnown RBP22.29■■□□□ 1.16
SHKBP1-225ENST00000600733 SYN2Q92777 582 aaPredicted RBP22.29■■□□□ 1.16
SHKBP1-225ENST00000600733 NUCKS1Q9H1E3 243 aaKnown RBP22.29■■□□□ 1.16
SHKBP1-225ENST00000600733 C10orf71Q711Q0 1435 aa22.28■■□□□ 1.16
SHKBP1-225ENST00000600733 GNA14O95837 355 aa22.28■■□□□ 1.16
SHKBP1-225ENST00000600733 IVLP07476 585 aa22.28■■□□□ 1.16
SHKBP1-225ENST00000600733 CACNB3P54284 484 aa22.28■■□□□ 1.16
SHKBP1-225ENST00000600733 ADAM9Q13443 819 aa22.28■■□□□ 1.16
SHKBP1-225ENST00000600733 ARHGAP27Q6ZUM4 889 aa22.28■■□□□ 1.16
SHKBP1-225ENST00000600733 FAM133AQ8N9E0 248 aa22.28■■□□□ 1.16
SHKBP1-225ENST00000600733 STIM2Q9P246 746 aa22.28■■□□□ 1.16
SHKBP1-225ENST00000600733 A0A087X0T9 212 aa22.28■■□□□ 1.16
SHKBP1-225ENST00000600733 PALMO75781 387 aa22.28■■□□□ 1.16
SHKBP1-225ENST00000600733 FTCDO95954 541 aa22.28■■□□□ 1.16
SHKBP1-225ENST00000600733 FAM228BP0C875 321 aa22.28■■□□□ 1.16
SHKBP1-225ENST00000600733 KLRC1P26715 233 aa22.28■■□□□ 1.16
SHKBP1-225ENST00000600733 SLC12A3P55017 1021 aa22.28■■□□□ 1.16
SHKBP1-225ENST00000600733 MARSP56192 900 aaKnown RBP22.28■■□□□ 1.16
SHKBP1-225ENST00000600733 P2RX7Q99572 595 aaKnown RBP22.28■■□□□ 1.16
SHKBP1-225ENST00000600733 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP22.28■■□□□ 1.16
SHKBP1-225ENST00000600733 QSER1Q2KHR3 1735 aa22.27■■□□□ 1.16
SHKBP1-225ENST00000600733 CDC37Q16543 378 aaPredicted RBP22.27■■□□□ 1.16
SHKBP1-225ENST00000600733 PACSIN1Q9BY11 444 aa22.27■■□□□ 1.16
SHKBP1-225ENST00000600733 PLEKHA4Q9H4M7 779 aa22.27■■□□□ 1.16
SHKBP1-225ENST00000600733 ADAMTS1Q9UHI8 967 aa22.27■■□□□ 1.16
SHKBP1-225ENST00000600733 KLRG2A4D1S0 409 aaPredicted RBP22.27■■□□□ 1.16
SHKBP1-225ENST00000600733 MEIS1O00470 390 aa22.27■■□□□ 1.16
SHKBP1-225ENST00000600733 EEF2P13639 858 aaKnown RBP22.27■■□□□ 1.16
SHKBP1-225ENST00000600733 USP11P51784 963 aa22.27■■□□□ 1.16
SHKBP1-225ENST00000600733 SNAP25P60880 206 aa22.27■■□□□ 1.16
SHKBP1-225ENST00000600733 PSMC6P62333 389 aa22.27■■□□□ 1.16
SHKBP1-225ENST00000600733 TCP10Q12799 353 aa22.27■■□□□ 1.16
SHKBP1-225ENST00000600733 SLC18A3Q16572 532 aa22.27■■□□□ 1.16
SHKBP1-225ENST00000600733 C8orf74Q6P047 294 aa22.27■■□□□ 1.16
SHKBP1-225ENST00000600733 PCDHAC2Q9Y5I4 1007 aa22.27■■□□□ 1.16
SHKBP1-225ENST00000600733 MEIS2O14770 477 aa22.26■■□□□ 1.15
SHKBP1-225ENST00000600733 NR2F2P24468 414 aa22.26■■□□□ 1.15
SHKBP1-225ENST00000600733 EPS15P42566 896 aa22.26■■□□□ 1.15
SHKBP1-225ENST00000600733 KCNH2Q12809 1159 aa22.26■■□□□ 1.15
SHKBP1-225ENST00000600733 NAB2Q15742 525 aa22.26■■□□□ 1.15
SHKBP1-225ENST00000600733 SRLQ86TD4 932 aa22.26■■□□□ 1.15
SHKBP1-225ENST00000600733 CATSPER3Q86XQ3 398 aa22.26■■□□□ 1.15
SHKBP1-225ENST00000600733 TEKT1Q969V4 418 aa22.26■■□□□ 1.15
SHKBP1-225ENST00000600733 NAP1L4Q99733 375 aaKnown RBP22.26■■□□□ 1.15
SHKBP1-225ENST00000600733 DHX36Q9H2U1 1008 aaKnown RBP22.26■■□□□ 1.15
SHKBP1-225ENST00000600733 PACSIN2Q9UNF0 486 aaPredicted RBP22.26■■□□□ 1.15
SHKBP1-225ENST00000600733 FRMD3A2A2Y4 597 aa22.26■■□□□ 1.15
SHKBP1-225ENST00000600733 ACTN1P12814 892 aa22.26■■□□□ 1.15
SHKBP1-225ENST00000600733 KLHL30Q0D2K2 578 aa22.26■■□□□ 1.15
SHKBP1-225ENST00000600733 CFAP221Q4G0U5 840 aa22.26■■□□□ 1.15
SHKBP1-225ENST00000600733 PRR16Q569H4 304 aa22.26■■□□□ 1.15
SHKBP1-225ENST00000600733 RUBCNQ92622 972 aa22.26■■□□□ 1.15
SHKBP1-225ENST00000600733 GANQ9H2C0 597 aa22.26■■□□□ 1.15
SHKBP1-225ENST00000600733 FEZ2Q9UHY8 353 aaPredicted RBP22.26■■□□□ 1.15
SHKBP1-225ENST00000600733 RRP15Q9Y3B9 282 aaKnown RBP22.26■■□□□ 1.15
SHKBP1-225ENST00000600733 CYP3A7-CYP3A51PA0A087WV96 503 aa22.25■■□□□ 1.15
SHKBP1-225ENST00000600733 MYO1CO00159 1063 aa22.25■■□□□ 1.15
SHKBP1-225ENST00000600733 TRIM66O15016 1216 aa22.25■■□□□ 1.15
SHKBP1-225ENST00000600733 CYP3A7P24462 503 aa22.25■■□□□ 1.15
SHKBP1-225ENST00000600733 SPIRE1Q08AE8 756 aa22.25■■□□□ 1.15
SHKBP1-225ENST00000600733 PABPC4Q13310 644 aaKnown RBP eCLIP22.25■■□□□ 1.151e-9■■■■□ 22.8
SHKBP1-225ENST00000600733 KIAA0753Q2KHM9 967 aa22.25■■□□□ 1.15
SHKBP1-225ENST00000600733 ZC3H3Q8IXZ2 948 aaKnown RBP22.25■■□□□ 1.15
SHKBP1-225ENST00000600733 TSEN2Q8NCE0 465 aaKnown RBP22.25■■□□□ 1.15
SHKBP1-225ENST00000600733 GJD4Q96KN9 370 aaPredicted RBP22.25■■□□□ 1.15
SHKBP1-225ENST00000600733 GOLGA6CA6NDK9 693 aa22.24■■□□□ 1.15
SHKBP1-225ENST00000600733 GOLGA6DP0CG33 693 aa22.24■■□□□ 1.15
SHKBP1-225ENST00000600733 EPHB4P54760 987 aa22.24■■□□□ 1.15
SHKBP1-225ENST00000600733 ARHGAP4P98171 946 aa22.24■■□□□ 1.15
SHKBP1-225ENST00000600733 SLFN13Q68D06 897 aa22.24■■□□□ 1.15
SHKBP1-225ENST00000600733 ETNPPLQ8TBG4 499 aa22.24■■□□□ 1.15
SHKBP1-225ENST00000600733 GOLGA6AQ9NYA3 693 aa22.24■■□□□ 1.15
SHKBP1-225ENST00000600733 TSKSQ9UJT2 592 aa22.24■■□□□ 1.15
SHKBP1-225ENST00000600733 ATAD5Q96QE3 1844 aa22.24■■□□□ 1.15
SHKBP1-225ENST00000600733 CETN3O15182 167 aa22.24■■□□□ 1.15
SHKBP1-225ENST00000600733 TAL1P17542 331 aaPredicted RBP22.24■■□□□ 1.15
SHKBP1-225ENST00000600733 HHIPL2Q6UWX4 724 aa22.24■■□□□ 1.15
SHKBP1-225ENST00000600733 SLFN12Q8IYM2 578 aa22.24■■□□□ 1.15
SHKBP1-225ENST00000600733 FAM76AQ8TAV0 307 aa22.24■■□□□ 1.15
SHKBP1-225ENST00000600733 CCDC17Q96LX7 622 aa22.24■■□□□ 1.15
SHKBP1-225ENST00000600733 MBOAT7Q96N66 472 aa22.24■■□□□ 1.15
SHKBP1-225ENST00000600733 LUC7LQ9NQ29 371 aaKnown RBP22.24■■□□□ 1.15
SHKBP1-225ENST00000600733 KCNQ5Q9NR82 932 aa22.24■■□□□ 1.15
SHKBP1-225ENST00000600733 AIPL1Q9NZN9 384 aa22.24■■□□□ 1.15
SHKBP1-225ENST00000600733 ZSCAN5CA6NGD5 496 aaPredicted RBP22.23■■□□□ 1.15
SHKBP1-225ENST00000600733 GLI1P08151 1106 aa22.23■■□□□ 1.15
SHKBP1-225ENST00000600733 GIT2Q14161 759 aa22.23■■□□□ 1.15
SHKBP1-225ENST00000600733 ASIC2Q16515 512 aa22.23■■□□□ 1.15
SHKBP1-225ENST00000600733 EDRF1Q3B7T1 1238 aa22.23■■□□□ 1.15
SHKBP1-225ENST00000600733 GLT8D2Q9H1C3 349 aa22.23■■□□□ 1.15
SHKBP1-225ENST00000600733 HDAC9Q9UKV0 1011 aa22.23■■□□□ 1.15
SHKBP1-225ENST00000600733 PITPNM2Q9BZ72 1349 aa22.23■■□□□ 1.15
SHKBP1-225ENST00000600733 SLC9A1P19634 815 aa22.23■■□□□ 1.15
SHKBP1-225ENST00000600733 HOXD13P35453 343 aa22.23■■□□□ 1.15
SHKBP1-225ENST00000600733 CRKP46108 304 aa22.23■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms