RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 SPDYCQ5MJ68 293 aa9.67□□□□□ -0.86
VPS13D-212ENST00000543766 ZNF566Q969W8 418 aa9.67□□□□□ -0.86
VPS13D-212ENST00000543766 TTC1Q99614 292 aa9.67□□□□□ -0.86
VPS13D-212ENST00000543766 SERHL2Q9H4I8 314 aa9.67□□□□□ -0.86
VPS13D-212ENST00000543766 YTHDC2Q9H6S0 1430 aaKnown RBP9.67□□□□□ -0.86
VPS13D-212ENST00000543766 DLC1Q96QB1 1528 aa9.66□□□□□ -0.86
VPS13D-212ENST00000543766 FAM221BA6H8Z2 402 aa9.66□□□□□ -0.86
VPS13D-212ENST00000543766 USP27XA6NNY8 438 aa9.66□□□□□ -0.86
VPS13D-212ENST00000543766 MASP1P48740 699 aa9.66□□□□□ -0.86
VPS13D-212ENST00000543766 MTTPP55157 894 aa9.66□□□□□ -0.86
VPS13D-212ENST00000543766 KCTD16Q68DU8 428 aa9.66□□□□□ -0.86
VPS13D-212ENST00000543766 PRPF18Q99633 342 aaKnown RBP9.66□□□□□ -0.86
VPS13D-212ENST00000543766 COQ7Q99807 217 aa9.66□□□□□ -0.86
VPS13D-212ENST00000543766 TTPALQ9BTX7 342 aa9.66□□□□□ -0.86
VPS13D-212ENST00000543766 PALMDQ9NP74 551 aa9.66□□□□□ -0.86
VPS13D-212ENST00000543766 FARSBQ9NSD9 589 aaKnown RBP9.66□□□□□ -0.86
VPS13D-212ENST00000543766 AFF4Q9UHB7 1163 aaKnown RBP9.66□□□□□ -0.86
VPS13D-212ENST00000543766 MSH6P52701 1360 aa9.66□□□□□ -0.86
VPS13D-212ENST00000543766 ITIH6Q6UXX5 1313 aa9.66□□□□□ -0.86
VPS13D-212ENST00000543766 KRBA1A5PL33 1030 aa9.66□□□□□ -0.86
VPS13D-212ENST00000543766 PSMD14O00487 310 aa9.66□□□□□ -0.86
VPS13D-212ENST00000543766 TMEM11P17152 192 aa9.66□□□□□ -0.86
VPS13D-212ENST00000543766 TMED10P49755 219 aaKnown RBP9.66□□□□□ -0.86
VPS13D-212ENST00000543766 ZNF75DP51815 510 aa9.66□□□□□ -0.86
VPS13D-212ENST00000543766 MYO1EQ12965 1108 aa9.66□□□□□ -0.86
VPS13D-212ENST00000543766 G3BP1Q13283 466 aaKnown RBP eCLIP9.66□□□□□ -0.86
VPS13D-212ENST00000543766 MKRN4PQ13434 485 aaPredicted RBP9.66□□□□□ -0.86
VPS13D-212ENST00000543766 MAP3K11Q16584 847 aa9.66□□□□□ -0.86
VPS13D-212ENST00000543766 ANKDD1AQ495B1 522 aa9.66□□□□□ -0.86
VPS13D-212ENST00000543766 PPP1R15BQ5SWA1 713 aa9.66□□□□□ -0.86
VPS13D-212ENST00000543766 FAM180BQ6P0A1 224 aa9.66□□□□□ -0.86
VPS13D-212ENST00000543766 CARNMT1Q8N4J0 409 aa9.66□□□□□ -0.86
VPS13D-212ENST00000543766 DTX3Q8N9I9 347 aa9.66□□□□□ -0.86
VPS13D-212ENST00000543766 CFAP61Q8NHU2 1237 aa9.66□□□□□ -0.86
VPS13D-212ENST00000543766 UTP15Q8TED0 518 aaKnown RBP9.66□□□□□ -0.86
VPS13D-212ENST00000543766 TRAV6A0A075B6T7 132 aa9.66□□□□□ -0.86
VPS13D-212ENST00000543766 MAP3K13O43283 966 aa9.66□□□□□ -0.86
VPS13D-212ENST00000543766 MAP3K7O43318 606 aa9.66□□□□□ -0.86
VPS13D-212ENST00000543766 SCGB1D2O95969 90 aa9.66□□□□□ -0.86
VPS13D-212ENST00000543766 ZNF3P17036 446 aa9.66□□□□□ -0.86
VPS13D-212ENST00000543766 FGFR4P22455 802 aa9.66□□□□□ -0.86
VPS13D-212ENST00000543766 CTNNA1P35221 906 aaKnown RBP9.66□□□□□ -0.86
VPS13D-212ENST00000543766 INHBCP55103 352 aa9.66□□□□□ -0.86
VPS13D-212ENST00000543766 BPIFB4P59827 614 aa9.66□□□□□ -0.86
VPS13D-212ENST00000543766 RBM43Q6ZSC3 357 aaKnown RBP9.66□□□□□ -0.86
VPS13D-212ENST00000543766 TAS1R3Q7RTX0 852 aa9.66□□□□□ -0.86
VPS13D-212ENST00000543766 STRA8Q7Z7C7 330 aa9.66□□□□□ -0.86
VPS13D-212ENST00000543766 RSPH3Q86UC2 560 aa9.66□□□□□ -0.86
VPS13D-212ENST00000543766 MCF2L2Q86YR7 1114 aa9.66□□□□□ -0.86
VPS13D-212ENST00000543766 PROM2Q8N271 834 aa9.66□□□□□ -0.86
VPS13D-212ENST00000543766 CCDC155Q8N6L0 562 aa9.66□□□□□ -0.86
VPS13D-212ENST00000543766 TTC17Q96AE7 1141 aa9.66□□□□□ -0.86
VPS13D-212ENST00000543766 COG8Q96MW5 612 aa9.66□□□□□ -0.86
VPS13D-212ENST00000543766 BARD1Q99728 777 aaKnown RBP9.66□□□□□ -0.86
VPS13D-212ENST00000543766 SLC39A2Q9NP94 309 aa9.66□□□□□ -0.86
VPS13D-212ENST00000543766 KLC4Q9NSK0 619 aa9.66□□□□□ -0.86
VPS13D-212ENST00000543766 MALT1Q9UDY8 824 aa9.66□□□□□ -0.86
VPS13D-212ENST00000543766 SEC63Q9UGP8 760 aaKnown RBP9.66□□□□□ -0.86
VPS13D-212ENST00000543766 TMEM5Q9Y2B1 443 aa9.66□□□□□ -0.86
VPS13D-212ENST00000543766 RRP7AQ9Y3A4 280 aaKnown RBP9.66□□□□□ -0.86
VPS13D-212ENST00000543766 AFG3L2Q9Y4W6 797 aa9.66□□□□□ -0.86
VPS13D-212ENST00000543766 ARHGAP23Q9P227 1491 aa9.66□□□□□ -0.86
VPS13D-212ENST00000543766 H3BUI4 141 aa9.65□□□□□ -0.86
VPS13D-212ENST00000543766 GOLGA8RI6L899 631 aa9.65□□□□□ -0.86
VPS13D-212ENST00000543766 STK25O00506 426 aa9.65□□□□□ -0.86
VPS13D-212ENST00000543766 CCT8P50990 548 aa9.65□□□□□ -0.86
VPS13D-212ENST00000543766 INTS3Q68E01 1043 aaKnown RBP9.65□□□□□ -0.86
VPS13D-212ENST00000543766 CFAP161Q6P656 301 aa9.65□□□□□ -0.86
VPS13D-212ENST00000543766 TUBA3EQ6PEY2 450 aa9.65□□□□□ -0.86
VPS13D-212ENST00000543766 ZNF600Q6ZNG1 722 aa9.65□□□□□ -0.86
VPS13D-212ENST00000543766 IFNL3Q8IZI9 196 aa9.65□□□□□ -0.86
VPS13D-212ENST00000543766 CCDC33Q8N5R6 958 aa9.65□□□□□ -0.86
VPS13D-212ENST00000543766 RSAD2Q8WXG1 361 aa9.65□□□□□ -0.86
VPS13D-212ENST00000543766 HDAC2Q92769 488 aaKnown RBP9.65□□□□□ -0.86
VPS13D-212ENST00000543766 NCLNQ969V3 563 aa9.65□□□□□ -0.86
VPS13D-212ENST00000543766 SNX27Q96L92 541 aa9.65□□□□□ -0.86
VPS13D-212ENST00000543766 ANKRD27Q96NW4 1050 aa9.65□□□□□ -0.86
VPS13D-212ENST00000543766 XAB2Q9HCS7 855 aaKnown RBP9.65□□□□□ -0.86
VPS13D-212ENST00000543766 CCDC177Q9NQR7 707 aaPredicted RBP9.65□□□□□ -0.86
VPS13D-212ENST00000543766 BMP2KQ9NSY1 1161 aaPredicted RBP9.65□□□□□ -0.86
VPS13D-212ENST00000543766 DDX20Q9UHI6 824 aaKnown RBP9.65□□□□□ -0.86
VPS13D-212ENST00000543766 GOLGA8SH3BPF8 625 aa9.65□□□□□ -0.86
VPS13D-212ENST00000543766 ATP5HO75947 161 aa9.65□□□□□ -0.86
VPS13D-212ENST00000543766 HEXBP07686 556 aa9.65□□□□□ -0.86
VPS13D-212ENST00000543766 IFIT1P09914 478 aaKnown RBP9.65□□□□□ -0.86
VPS13D-212ENST00000543766 ZKSCAN1P17029 563 aaPredicted RBP9.65□□□□□ -0.86
VPS13D-212ENST00000543766 IDUAP35475 653 aa9.65□□□□□ -0.86
VPS13D-212ENST00000543766 OASLQ15646 514 aaKnown RBP9.65□□□□□ -0.86
VPS13D-212ENST00000543766 METTL11BQ5VVY1 283 aa9.65□□□□□ -0.86
VPS13D-212ENST00000543766 NLRP9Q7RTR0 991 aa9.65□□□□□ -0.86
VPS13D-212ENST00000543766 CCDC170Q8IYT3 715 aa9.65□□□□□ -0.86
VPS13D-212ENST00000543766 NAT8LQ8N9F0 302 aa9.65□□□□□ -0.86
VPS13D-212ENST00000543766 SRCIN1Q9C0H9 1055 aa9.65□□□□□ -0.86
VPS13D-212ENST00000543766 CHD2O14647 1828 aaKnown RBP9.65□□□□□ -0.86
VPS13D-212ENST00000543766 TMEM232C9JQI7 657 aa9.65□□□□□ -0.87
VPS13D-212ENST00000543766 ACTN4O43707 911 aaKnown RBP9.65□□□□□ -0.87
VPS13D-212ENST00000543766 SMAD1Q15797 465 aaKnown RBP9.65□□□□□ -0.87
VPS13D-212ENST00000543766 FAM133AQ8N9E0 248 aa9.65□□□□□ -0.87
VPS13D-212ENST00000543766 SPERTQ8NA61 448 aa9.65□□□□□ -0.87
VPS13D-212ENST00000543766 LRRN4CLQ8ND94 238 aa9.65□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms