RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 DEFB118Q96PH6 123 aa13.08□□□□□ -0.32
YBX3-213ENST00000542641 SPTLC2O15270 562 aa13.07□□□□□ -0.32
YBX3-213ENST00000542641 CHMP2AO43633 222 aa13.07□□□□□ -0.32
YBX3-213ENST00000542641 YEATS4O95619 227 aa13.07□□□□□ -0.32
YBX3-213ENST00000542641 PGK1P00558 417 aa13.07□□□□□ -0.32
YBX3-213ENST00000542641 C6orf222P0C671 652 aaPredicted RBP13.07□□□□□ -0.32
YBX3-213ENST00000542641 MARCKSP29966 332 aaPredicted RBP13.07□□□□□ -0.32
YBX3-213ENST00000542641 CPT1AP50416 773 aa13.07□□□□□ -0.32
YBX3-213ENST00000542641 GJA9P57773 515 aa13.07□□□□□ -0.32
YBX3-213ENST00000542641 KRT76Q01546 638 aa13.07□□□□□ -0.32
YBX3-213ENST00000542641 PPP2R5CQ13362 524 aa13.07□□□□□ -0.32
YBX3-213ENST00000542641 HSDL1Q3SXM5 330 aa13.07□□□□□ -0.32
YBX3-213ENST00000542641 BRDTQ58F21 947 aaPredicted RBP13.07□□□□□ -0.32
YBX3-213ENST00000542641 ARL6IP4Q66PJ3 421 aaKnown RBP13.07□□□□□ -0.32
YBX3-213ENST00000542641 ZNF746Q6NUN9 644 aaPredicted RBP13.07□□□□□ -0.32
YBX3-213ENST00000542641 PPTC7Q8NI37 304 aa13.07□□□□□ -0.32
YBX3-213ENST00000542641 UNC45AQ9H3U1 944 aa13.07□□□□□ -0.32
YBX3-213ENST00000542641 VAV3Q9UKW4 847 aa13.07□□□□□ -0.32
YBX3-213ENST00000542641 KIAA1217Q5T5P2 1943 aa13.07□□□□□ -0.32
YBX3-213ENST00000542641 SYNRGQ9UMZ2 1314 aa13.07□□□□□ -0.32
YBX3-213ENST00000542641 POTEFA5A3E0 1075 aa13.06□□□□□ -0.32
YBX3-213ENST00000542641 VWA3AA6NCI4 1184 aa13.06□□□□□ -0.32
YBX3-213ENST00000542641 A6NJR5 290 aa13.06□□□□□ -0.32
YBX3-213ENST00000542641 CCNE2O96020 404 aa13.06□□□□□ -0.32
YBX3-213ENST00000542641 GJB1P08034 283 aa13.06□□□□□ -0.32
YBX3-213ENST00000542641 ACTR2P61160 394 aa13.06□□□□□ -0.32
YBX3-213ENST00000542641 IRX5P78411 483 aaPredicted RBP13.06□□□□□ -0.32
YBX3-213ENST00000542641 BEX3Q00994 111 aa13.06□□□□□ -0.32
YBX3-213ENST00000542641 PDIA5Q14554 519 aa13.06□□□□□ -0.32
YBX3-213ENST00000542641 IL17AQ16552 155 aa13.06□□□□□ -0.32
YBX3-213ENST00000542641 FSCN1Q16658 493 aaKnown RBP13.06□□□□□ -0.32
YBX3-213ENST00000542641 GNASQ5JWF2 1037 aa13.06□□□□□ -0.32
YBX3-213ENST00000542641 NCAPH2Q6IBW4 605 aa13.06□□□□□ -0.32
YBX3-213ENST00000542641 RNF180Q86T96 592 aa13.06□□□□□ -0.32
YBX3-213ENST00000542641 SMAP1Q8IYB5 467 aaPredicted RBP13.06□□□□□ -0.32
YBX3-213ENST00000542641 ARRDC4Q8NCT1 418 aa13.06□□□□□ -0.32
YBX3-213ENST00000542641 KCNG4Q8TDN1 519 aa13.06□□□□□ -0.32
YBX3-213ENST00000542641 SEPT1Q8WYJ6 367 aa13.06□□□□□ -0.32
YBX3-213ENST00000542641 FERMT2Q96AC1 680 aa13.06□□□□□ -0.32
YBX3-213ENST00000542641 SPATA32Q96LK8 384 aa13.06□□□□□ -0.32
YBX3-213ENST00000542641 GPR20Q99678 358 aa13.06□□□□□ -0.32
YBX3-213ENST00000542641 TMEM106CQ9BVX2 250 aa13.06□□□□□ -0.32
YBX3-213ENST00000542641 RAB34Q9BZG1 259 aa13.06□□□□□ -0.32
YBX3-213ENST00000542641 SCAND2PQ9GZW5 306 aaPredicted RBP13.06□□□□□ -0.32
YBX3-213ENST00000542641 UPF3AQ9H1J1 476 aaKnown RBP13.06□□□□□ -0.32
YBX3-213ENST00000542641 RTN4Q9NQC3 1192 aaKnown RBP13.06□□□□□ -0.32
YBX3-213ENST00000542641 DISC1Q9NRI5 854 aa13.06□□□□□ -0.32
YBX3-213ENST00000542641 RCOR1Q9UKL0 485 aa13.06□□□□□ -0.32
YBX3-213ENST00000542641 TELO2Q9Y4R8 837 aa13.06□□□□□ -0.32
YBX3-213ENST00000542641 SAMM50Q9Y512 469 aa13.06□□□□□ -0.32
YBX3-213ENST00000542641 ELP1O95163 1332 aa13.06□□□□□ -0.32
YBX3-213ENST00000542641 GSTTP1A0A1W2PQM5 241 aa13.05□□□□□ -0.32
YBX3-213ENST00000542641 MYADML2A6NDP7 307 aa13.05□□□□□ -0.32
YBX3-213ENST00000542641 WDR64B1ANS9 1081 aa13.05□□□□□ -0.32
YBX3-213ENST00000542641 PPP6R2O75170 966 aa13.05□□□□□ -0.32
YBX3-213ENST00000542641 ADAMTS4O75173 837 aa13.05□□□□□ -0.32
YBX3-213ENST00000542641 PPFIA4O75335 1185 aa13.05□□□□□ -0.32
YBX3-213ENST00000542641 SGPL1O95470 568 aa13.05□□□□□ -0.32
YBX3-213ENST00000542641 TFRCP02786 760 aaKnown RBP13.05□□□□□ -0.32
YBX3-213ENST00000542641 MMP3P08254 477 aa13.05□□□□□ -0.32
YBX3-213ENST00000542641 CHRM1P11229 460 aaPredicted RBP13.05□□□□□ -0.32
YBX3-213ENST00000542641 SFNP31947 248 aa13.05□□□□□ -0.32
YBX3-213ENST00000542641 JAK3P52333 1124 aa13.05□□□□□ -0.32
YBX3-213ENST00000542641 NKX3-2P78367 333 aa13.05□□□□□ -0.32
YBX3-213ENST00000542641 SPIRE1Q08AE8 756 aa13.05□□□□□ -0.32
YBX3-213ENST00000542641 DGKDQ16760 1214 aa13.05□□□□□ -0.32
YBX3-213ENST00000542641 MIS18BP1Q6P0N0 1132 aa13.05□□□□□ -0.32
YBX3-213ENST00000542641 B3GNT9Q6UX72 402 aa13.05□□□□□ -0.32
YBX3-213ENST00000542641 MIER3Q7Z3K6 550 aa13.05□□□□□ -0.32
YBX3-213ENST00000542641 KRI1Q8N9T8 703 aaKnown RBP13.05□□□□□ -0.32
YBX3-213ENST00000542641 U2AF1L4Q8WU68 220 aaKnown RBP13.05□□□□□ -0.32
YBX3-213ENST00000542641 LRWD1Q9UFC0 647 aa13.05□□□□□ -0.32
YBX3-213ENST00000542641 PCDHA10Q9Y5I2 948 aa13.05□□□□□ -0.32
YBX3-213ENST00000542641 SRPRBQ9Y5M8 271 aaKnown RBP13.05□□□□□ -0.32
YBX3-213ENST00000542641 MORC2Q9Y6X9 1032 aaPredicted RBP13.05□□□□□ -0.32
YBX3-213ENST00000542641 POTEMA6NI47 508 aa13.04□□□□□ -0.32
YBX3-213ENST00000542641 EML1O00423 815 aa13.04□□□□□ -0.32
YBX3-213ENST00000542641 BACH1O14867 736 aa13.04□□□□□ -0.32
YBX3-213ENST00000542641 CTAGE5O15320 804 aa13.04□□□□□ -0.32
YBX3-213ENST00000542641 ZEB2O60315 1214 aa13.04□□□□□ -0.32
YBX3-213ENST00000542641 ATG7O95352 703 aa13.04□□□□□ -0.32
YBX3-213ENST00000542641 PSAPP07602 524 aa13.04□□□□□ -0.32
YBX3-213ENST00000542641 TCF7P36402 384 aaPredicted RBP13.04□□□□□ -0.32
YBX3-213ENST00000542641 ME1P48163 572 aa13.04□□□□□ -0.32
YBX3-213ENST00000542641 CLCN6P51797 869 aa13.04□□□□□ -0.32
YBX3-213ENST00000542641 LRRC41Q15345 812 aa13.04□□□□□ -0.32
YBX3-213ENST00000542641 UTP14CQ5TAP6 766 aaKnown RBP13.04□□□□□ -0.32
YBX3-213ENST00000542641 SWSAP1Q6NVH7 229 aa13.04□□□□□ -0.32
YBX3-213ENST00000542641 ABHD15Q6UXT9 468 aa13.04□□□□□ -0.32
YBX3-213ENST00000542641 IGSF22Q8N9C0 903 aa13.04□□□□□ -0.32
YBX3-213ENST00000542641 KLHDC9Q8NEP7 349 aa13.04□□□□□ -0.32
YBX3-213ENST00000542641 RDM1Q8NG50 284 aa13.04□□□□□ -0.32
YBX3-213ENST00000542641 LEO1Q8WVC0 666 aaPredicted RBP13.04□□□□□ -0.32
YBX3-213ENST00000542641 KIF12Q96FN5 646 aa13.04□□□□□ -0.32
YBX3-213ENST00000542641 AK8Q96MA6 479 aa13.04□□□□□ -0.32
YBX3-213ENST00000542641 CLIC6Q96NY7 704 aa13.04□□□□□ -0.32
YBX3-213ENST00000542641 GDPD2Q9HCC8 539 aa13.04□□□□□ -0.32
YBX3-213ENST00000542641 FBXO2Q9UK22 296 aaPredicted RBP13.04□□□□□ -0.32
YBX3-213ENST00000542641 OGDHLQ9ULD0 1010 aa13.04□□□□□ -0.32
YBX3-213ENST00000542641 KPNA6O60684 536 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms